Clone BO07780 Report

Search the DGRC for BO07780

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:77
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG32063-RB
Protein status:BO07780.pep: validated full length
Sequenced Size:1639

Clone Sequence Records

BO07780.3prime Sequence

865 bp (759 high quality bases) assembled on 2006-01-06

> BO07780.3prime
ATGGTCTAGAAAGCTTGCTTTAGGCTGTTCGGGGCAGGCGATTTGGTAGA
GGAACTGCACCAATGTCCTGGTCGGTCTGCCAGTCATCCTGCCAGCTGTC
AAGTAGGGTATCAATCCATATGTGCTCAATAGTCCAGTACCATAGGTATC
CAAATGGGCCCAATCGCTGCAGGGCACGAGTTCGTGGAGAACAGCAGCTG
CCAGGCAAGACGAGGCATATCCCTCGCCATCGTTCAGTAGGTCGAAGCTC
AGGTGCTCTGCCACACGATCCTTGTAGTAGCGCCATAAGGGGAATCGCCA
CAAGCGATCACCGGTCAAGGAACCGGCACGCTGGAATTGTTTCCATATAT
AGTGAGAATTCGACCAAATACCAGTGGCTCCACCGCCAACTGCCTTCTTT
ACGCCCTTGCACATGGAGCCCACATCCACGACGAGTCTGGGCTTGTATGT
TATCTGACCATAAAGCATGGGATCCGAGATGACCACCACTCCTGTTCGAC
TTATATTACGCACCGCCAGAGATTTGGAATTGAGTAAGGTCACCACATCG
CCAGGCTTGCAGGACATTCCAGACGGCAGATTCTCGCACAGTGGTATCAC
AGCAGTTATATTGATGGGCAAAGATAGAGCAGCTGCTGCGCGCATGGCGG
CCAAAATGCATGCCGCTCCAGTGAGATCTCCGCGGAATTCATCCATGCCC
TTGCAAGGACGCAGATTGATGCCACCTGAATTGAAGGTTATGCCTTGACC
CACCAGCAGAATGGGCTTATCTTCCGGTGCGGTGCCGCAATAGGCCACCT
CAAGGAGAACGGGTGGTTCGCAACTGCCTTTGGCATCATCAGGAAGGAGT
TCAGATGTTGCTGTT

BO07780.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG32063-PB 1608 CG32063-RB 789..1605 835..19 4085 100 Minus
CG32063-PA 1608 CG32063-RA 789..1605 835..19 4085 100 Minus
CG32063-PB 1608 CG32063-RB 758..788 865..835 155 100 Minus
CG32063-PA 1608 CG32063-RA 758..788 865..835 155 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap3-RD 2640 CG32063-RD 935..1782 865..19 4215 99.9 Minus
S-Lap3-RC 2146 CG32063-RC 935..1782 865..19 4215 99.9 Minus
S-Lap3-RB 2520 CG32063-RB 1309..2156 865..19 4215 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10467269..10468116 865..19 4190 99.9 Minus
2R 25286936 2R 13778636..13779188 296..847 315 70.9 Plus
2R 25286936 2R 16492171..16492486 856..542 195 71.5 Minus
2R 25286936 2R 13597656..13597741 834..749 190 81.4 Minus
Blast to na_te.dros performed on 2015-02-12 23:55:37 has no hits.

BO07780.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:00 Download gff for BO07780.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32063-PA 758..1608 15..865 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:32 Download gff for BO07780.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32063-PA 758..1608 15..865 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:29:31 Download gff for BO07780.3prime
Subject Subject Range Query Range Percent Splice Strand
S-Lap3-RB 1309..2161 11..865 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:38:25 Download gff for BO07780.3prime
Subject Subject Range Query Range Percent Splice Strand
S-Lap3-RB 1309..2161 11..865 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:38:25 Download gff for BO07780.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10467269..10468121 11..865 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:29:31 Download gff for BO07780.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10460369..10461221 11..865 99   Minus

BO07780.5prime Sequence

907 bp (859 high quality bases) assembled on 2006-01-06

> BO07780.5prime
GAAGTTATCAGTCGACATGCGTGGACAACTGTTGCTGAAGGGACCCGCAT
TGGCGAGGAGCTTGAGCCGGTGCCGCGTAAGTGCCGTGCCCCAAATTGGA
TCTGTTCGTCATGTGACCGCCGGCTGTGCAGCTGGTGATACCGTCAAGGG
CGGCAAAGGAATCGTCTTGGGCCTCTACGAAAAGGAGTCGGGCAAGGGAC
CTCGATTAACGCCTGCTGGCGAAAAGTTTGACGATCGTGTGCAGGGCAAG
CTATCGGAATTGGTTTGCGAAACCAAATTAACTGGACGATTGGGTCGCGG
CAAGGTCTTCAACAATGTGGACAGCGAGTTCAGATCCATTTGCGTGGTGG
GCGTTGGTCTCGAAGGCATAGCCTTTAATGAACTGGAAATGCTGGACGAG
GGTATGGAGAATGTGCGCATAGCTGCTGGAATCGGTGCCCGATCATTACA
AAGTATTGGCTGCTCGGAAGTGCATGTGGATAATATGGACTATGCCGAAC
AGGCAGCCGAAGGTGCTGCACTGGCCATTTGGCGATATGAGGAGAATCTG
GCGAAGAAGTATCGTAGCACTATACCGAAACTGGAGCTGCATGGTTCACC
GGATGTCGAGTCCTGGACAAGGGGCCTCTTCAAGGCAGAGGCACAGAATT
TGGCCAGAAGACTGTGTGATGCCCCAGCCAATTGTATGACACCGACAATT
GTGGCACAGGCTGCAGTGGATTCACTATGCCCATGCGGCATCACCGTAGA
GGTTCGCACCATGGAATGGATTGAACAGCAACATCTGAACTCCTTCCTGA
TGATTGCCAAAGGCAGTTGCGAACCACCCGTTCTCCTTGANGTGGCCTAT
TGCGGCACCGCACCGGAAGATAAGCCCATTCTGCTGGTGGGTCAGGCATA
ACCTTCA

BO07780.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG32063-PB 1608 CG32063-RB 1..878 17..894 4371 99.8 Plus
CG32063-PA 1608 CG32063-RA 1..878 17..894 4371 99.8 Plus
CG13340-PA 1584 CG13340-RA 340..372 377..409 165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap3-RD 2640 CG32063-RD 178..1069 17..907 4424 99.8 Plus
S-Lap3-RC 2146 CG32063-RC 178..1069 17..907 4424 99.8 Plus
S-Lap3-RB 2520 CG32063-RB 552..1443 17..907 4424 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10466512..10467403 17..907 4399 99.8 Plus
3L 28110227 3L 10491331..10491983 207..859 554 72.3 Plus
2R 25286936 2R 13779089..13779696 891..284 479 71.9 Minus
2R 25286936 2R 13597423..13597741 573..891 399 74.9 Plus
Blast to na_te.dros performed on 2015-02-13 13:22:12 has no hits.

BO07780.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:01 Download gff for BO07780.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32063-PA 1..891 17..906 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:34 Download gff for BO07780.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32063-PA 1..891 17..906 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:08:07 Download gff for BO07780.5prime
Subject Subject Range Query Range Percent Splice Strand
S-Lap3-RB 552..1442 17..906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:49:29 Download gff for BO07780.5prime
Subject Subject Range Query Range Percent Splice Strand
S-Lap3-RB 552..1442 17..906 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:49:29 Download gff for BO07780.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10466512..10467402 17..906 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:08:07 Download gff for BO07780.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10459612..10460502 17..906 99   Plus

BO07780.complete Sequence

1639 bp (1639 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630927

> BO07780.complete
GAAGTTATCAGTCGACATGCGTGGACAACTGTTGCTGAAGGGACCCGCAT
TGGCGAGGAGCTTGAGCCGGTGCCGCGTAAGTGCCGTGCCCCAAATTGGA
TCTGTTCGTCATGTGACCGCCGGCTGTGCAGCTGGTGATACCGTCAAGGG
CGGCAAAGGAATCGTCTTGGGCCTCTACGAAAAGGAGTCGGGCAAGGGAC
CTCGATTAACGCCTGCTGGCGAAAAGTTTGACGATCGTGTGCAGGGCAAG
CTATCGGAATTGGTTTGCGAAACCAAATTAACTGGACGATTGGGTCGCGG
CAAGGTCTTCAACAATGTGGACAGCGAGTTCAGATCCATTTGCGTGGTGG
GCGTTGGTCTCGAAGGCATAGCCTTTAATGAACTGGAAATGCTGGACGAG
GGTATGGAGAATGTGCGCATAGCTGCTGGAATCGGTGCCCGATCATTACA
AAGTATTGGCTGCTCGGAAGTGCATGTGGATAATATGGACTATGCCGAAC
AGGCAGCCGAAGGTGCTGCACTGGCCATTTGGCGATATGAGGAGAATCTG
GCGAAGAAGTATCGTAGCACTATACCGAAACTGGAGCTGCATGGTTCACC
GGATGTCGAGTCCTGGACAAGGGGCCTCTTCAAGGCAGAGGCACAGAATT
TGGCCAGAAGACTGTGTGATGCCCCAGCCAATTGTATGACACCGACAATT
GTGGCACAGGCTGCAGTGGATTCACTATGCCCATGCGGCATCACCGTAGA
GGTTCGCACCATGGAATGGATTGAACAGCAACATCTGAACTCCTTCCTGA
TGATTGCCAAAGGCAGTTGCGAACCACCCGTTCTCCTTGAGGTGGCCTAT
TGCGGCACCGCACCGGAAGATAAGCCCATTCTGCTGGTGGGTCAAGGCAT
AACCTTCAATTCAGGTGGCATCAATCTGCGTCCTTGCAAGGGCATGGATG
AATTCCGCGGAGATCTCACTGGAGCGGCATGCATTTTGGCCGCCATGCGC
GCAGCAGCTGCTCTATCTTTGCCCATCAATATAACTGCTGTGATACCACT
GTGCGAGAATCTGCCGTCTGGAATGTCCTGCAAGCCTGGCGATGTGGTGA
CCTTACTCAATTCCAAATCTCTGGCGGTGCGTAATATAAGTCGAACAGGA
GTGGTGGTCATCTCGGATCCCATGCTTTATGGTCAGATAACATACAAGCC
CAGACTCGTCGTGGATGTGGGCTCCATGTGCAAGGGCGTAAAGAAGGCAG
TTGGCGGTGGAGCCACTGGTATTTGGTCGAATTCTCACTATATATGGAAA
CAATTCCAGCGTGCCGGTTCCTTGACCGGTGATCGCTTGTGGCGATTCCC
CTTATGGCGCTACTACAAGGATCGTGTGGCAGAGCACCTGAGCTTCGACC
TACTGAACGATGGCGAGGGATATGCCTCGTCTTGCCTGGCAGCTGCTGTT
CTCCACGAACTCGTGCCCTGCAGCGATTGGGCCCATTTGGATACCTATGG
TACTGGACTATTGAGCACATATGGATTGATACCCTACTTGACAGCTGGCA
GGATGACTGGCAGACCGACCAGGACATTGGTGCAGTTCCTCTACCAAATC
GCCTGCCCCGAACAGCCTAAAGCAAGCTTTCTAGACCAT

BO07780.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap3-RD 1608 CG32063-PD 1..1605 17..1621 8025 100 Plus
S-Lap3-RC 1608 CG32063-PC 1..1605 17..1621 8025 100 Plus
S-Lap3-RB 1608 CG32063-PB 1..1605 17..1621 8025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap3-RD 2640 CG32063-RD 178..1782 17..1621 8025 100 Plus
S-Lap3-RC 2146 CG32063-RC 178..1782 17..1621 8025 100 Plus
S-Lap3-RB 2520 CG32063-RB 552..2156 17..1621 8025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10466512..10468116 17..1621 8025 100 Plus
3L 28110227 3L 10491331..10492433 207..1309 640 71 Plus
2R 25286936 2R 13778636..13779696 1344..284 640 70.7 Minus
2R 25286936 2R 13597423..13597741 573..891 410 75.2 Plus
2R 25286936 2R 16491861..16492486 473..1098 295 69.8 Plus
Blast to na_te.dros performed on 2014-11-27 07:36:50 has no hits.

BO07780.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:07 Download gff for BO07780.complete
Subject Subject Range Query Range Percent Splice Strand
CG32063-RA 1..1608 17..1625 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:48 Download gff for BO07780.complete
Subject Subject Range Query Range Percent Splice Strand
CG32063-RA 368..1977 17..1629 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:16 Download gff for BO07780.complete
Subject Subject Range Query Range Percent Splice Strand
S-Lap3-RB 552..2156 17..1623 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:07 Download gff for BO07780.complete
Subject Subject Range Query Range Percent Splice Strand
CG32063-RA 368..1977 17..1629 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:39 Download gff for BO07780.complete
Subject Subject Range Query Range Percent Splice Strand
S-Lap3-RB 552..2156 17..1623 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:39 Download gff for BO07780.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10466512..10468116 17..1623 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:16 Download gff for BO07780.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10459612..10461216 17..1623 99   Plus

BO07780.pep Sequence

Translation from 16 to 1639

> BO07780.pep
MRGQLLLKGPALARSLSRCRVSAVPQIGSVRHVTAGCAAGDTVKGGKGIV
LGLYEKESGKGPRLTPAGEKFDDRVQGKLSELVCETKLTGRLGRGKVFNN
VDSEFRSICVVGVGLEGIAFNELEMLDEGMENVRIAAGIGARSLQSIGCS
EVHVDNMDYAEQAAEGAALAIWRYEENLAKKYRSTIPKLELHGSPDVESW
TRGLFKAEAQNLARRLCDAPANCMTPTIVAQAAVDSLCPCGITVEVRTME
WIEQQHLNSFLMIAKGSCEPPVLLEVAYCGTAPEDKPILLVGQGITFNSG
GINLRPCKGMDEFRGDLTGAACILAAMRAAAALSLPINITAVIPLCENLP
SGMSCKPGDVVTLLNSKSLAVRNISRTGVVVISDPMLYGQITYKPRLVVD
VGSMCKGVKKAVGGGATGIWSNSHYIWKQFQRAGSLTGDRLWRFPLWRYY
KDRVAEHLSFDLLNDGEGYASSCLAAAVLHELVPCSDWAHLDTYGTGLLS
TYGLIPYLTAGRMTGRPTRTLVQFLYQIACPEQPKASFLDH

BO07780.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:33:29
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap3-PD 535 CG32063-PD 1..535 1..535 2802 100 Plus
S-Lap3-PC 535 CG32063-PC 1..535 1..535 2802 100 Plus
S-Lap3-PB 535 CG32063-PB 1..535 1..535 2802 100 Plus
S-Lap7-PB 527 CG13340-PB 10..525 15..532 1989 70.8 Plus
S-Lap7-PA 527 CG13340-PA 10..525 15..532 1989 70.8 Plus