Clone Sequence Records
BO07780.3prime Sequence
865 bp (759 high quality bases) assembled on 2006-01-06
> BO07780.3prime
ATGGTCTAGAAAGCTTGCTTTAGGCTGTTCGGGGCAGGCGATTTGGTAGA
GGAACTGCACCAATGTCCTGGTCGGTCTGCCAGTCATCCTGCCAGCTGTC
AAGTAGGGTATCAATCCATATGTGCTCAATAGTCCAGTACCATAGGTATC
CAAATGGGCCCAATCGCTGCAGGGCACGAGTTCGTGGAGAACAGCAGCTG
CCAGGCAAGACGAGGCATATCCCTCGCCATCGTTCAGTAGGTCGAAGCTC
AGGTGCTCTGCCACACGATCCTTGTAGTAGCGCCATAAGGGGAATCGCCA
CAAGCGATCACCGGTCAAGGAACCGGCACGCTGGAATTGTTTCCATATAT
AGTGAGAATTCGACCAAATACCAGTGGCTCCACCGCCAACTGCCTTCTTT
ACGCCCTTGCACATGGAGCCCACATCCACGACGAGTCTGGGCTTGTATGT
TATCTGACCATAAAGCATGGGATCCGAGATGACCACCACTCCTGTTCGAC
TTATATTACGCACCGCCAGAGATTTGGAATTGAGTAAGGTCACCACATCG
CCAGGCTTGCAGGACATTCCAGACGGCAGATTCTCGCACAGTGGTATCAC
AGCAGTTATATTGATGGGCAAAGATAGAGCAGCTGCTGCGCGCATGGCGG
CCAAAATGCATGCCGCTCCAGTGAGATCTCCGCGGAATTCATCCATGCCC
TTGCAAGGACGCAGATTGATGCCACCTGAATTGAAGGTTATGCCTTGACC
CACCAGCAGAATGGGCTTATCTTCCGGTGCGGTGCCGCAATAGGCCACCT
CAAGGAGAACGGGTGGTTCGCAACTGCCTTTGGCATCATCAGGAAGGAGT
TCAGATGTTGCTGTT
BO07780.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32063-PB | 1608 | CG32063-RB | 789..1605 | 835..19 | 4085 | 100 | Minus |
CG32063-PA | 1608 | CG32063-RA | 789..1605 | 835..19 | 4085 | 100 | Minus |
CG32063-PB | 1608 | CG32063-RB | 758..788 | 865..835 | 155 | 100 | Minus |
CG32063-PA | 1608 | CG32063-RA | 758..788 | 865..835 | 155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:55:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-Lap3-RD | 2640 | CG32063-RD | 935..1782 | 865..19 | 4215 | 99.9 | Minus |
S-Lap3-RC | 2146 | CG32063-RC | 935..1782 | 865..19 | 4215 | 99.9 | Minus |
S-Lap3-RB | 2520 | CG32063-RB | 1309..2156 | 865..19 | 4215 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:55:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10467269..10468116 | 865..19 | 4190 | 99.9 | Minus |
2R | 25286936 | 2R | 13778636..13779188 | 296..847 | 315 | 70.9 | Plus |
2R | 25286936 | 2R | 16492171..16492486 | 856..542 | 195 | 71.5 | Minus |
2R | 25286936 | 2R | 13597656..13597741 | 834..749 | 190 | 81.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:55:37 has no hits.
BO07780.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:00 Download gff for
BO07780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32063-PA | 758..1608 | 15..865 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:32 Download gff for
BO07780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32063-PA | 758..1608 | 15..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:29:31 Download gff for
BO07780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-Lap3-RB | 1309..2161 | 11..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:38:25 Download gff for
BO07780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-Lap3-RB | 1309..2161 | 11..865 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:38:25 Download gff for
BO07780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10467269..10468121 | 11..865 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:29:31 Download gff for
BO07780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10460369..10461221 | 11..865 | 99 | | Minus |
BO07780.5prime Sequence
907 bp (859 high quality bases) assembled on 2006-01-06
> BO07780.5prime
GAAGTTATCAGTCGACATGCGTGGACAACTGTTGCTGAAGGGACCCGCAT
TGGCGAGGAGCTTGAGCCGGTGCCGCGTAAGTGCCGTGCCCCAAATTGGA
TCTGTTCGTCATGTGACCGCCGGCTGTGCAGCTGGTGATACCGTCAAGGG
CGGCAAAGGAATCGTCTTGGGCCTCTACGAAAAGGAGTCGGGCAAGGGAC
CTCGATTAACGCCTGCTGGCGAAAAGTTTGACGATCGTGTGCAGGGCAAG
CTATCGGAATTGGTTTGCGAAACCAAATTAACTGGACGATTGGGTCGCGG
CAAGGTCTTCAACAATGTGGACAGCGAGTTCAGATCCATTTGCGTGGTGG
GCGTTGGTCTCGAAGGCATAGCCTTTAATGAACTGGAAATGCTGGACGAG
GGTATGGAGAATGTGCGCATAGCTGCTGGAATCGGTGCCCGATCATTACA
AAGTATTGGCTGCTCGGAAGTGCATGTGGATAATATGGACTATGCCGAAC
AGGCAGCCGAAGGTGCTGCACTGGCCATTTGGCGATATGAGGAGAATCTG
GCGAAGAAGTATCGTAGCACTATACCGAAACTGGAGCTGCATGGTTCACC
GGATGTCGAGTCCTGGACAAGGGGCCTCTTCAAGGCAGAGGCACAGAATT
TGGCCAGAAGACTGTGTGATGCCCCAGCCAATTGTATGACACCGACAATT
GTGGCACAGGCTGCAGTGGATTCACTATGCCCATGCGGCATCACCGTAGA
GGTTCGCACCATGGAATGGATTGAACAGCAACATCTGAACTCCTTCCTGA
TGATTGCCAAAGGCAGTTGCGAACCACCCGTTCTCCTTGANGTGGCCTAT
TGCGGCACCGCACCGGAAGATAAGCCCATTCTGCTGGTGGGTCAGGCATA
ACCTTCA
BO07780.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32063-PB | 1608 | CG32063-RB | 1..878 | 17..894 | 4371 | 99.8 | Plus |
CG32063-PA | 1608 | CG32063-RA | 1..878 | 17..894 | 4371 | 99.8 | Plus |
CG13340-PA | 1584 | CG13340-RA | 340..372 | 377..409 | 165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:22:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-Lap3-RD | 2640 | CG32063-RD | 178..1069 | 17..907 | 4424 | 99.8 | Plus |
S-Lap3-RC | 2146 | CG32063-RC | 178..1069 | 17..907 | 4424 | 99.8 | Plus |
S-Lap3-RB | 2520 | CG32063-RB | 552..1443 | 17..907 | 4424 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:22:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10466512..10467403 | 17..907 | 4399 | 99.8 | Plus |
3L | 28110227 | 3L | 10491331..10491983 | 207..859 | 554 | 72.3 | Plus |
2R | 25286936 | 2R | 13779089..13779696 | 891..284 | 479 | 71.9 | Minus |
2R | 25286936 | 2R | 13597423..13597741 | 573..891 | 399 | 74.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:22:12 has no hits.
BO07780.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:01 Download gff for
BO07780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32063-PA | 1..891 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:34 Download gff for
BO07780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32063-PA | 1..891 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:08:07 Download gff for
BO07780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-Lap3-RB | 552..1442 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:49:29 Download gff for
BO07780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-Lap3-RB | 552..1442 | 17..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:49:29 Download gff for
BO07780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10466512..10467402 | 17..906 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:08:07 Download gff for
BO07780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10459612..10460502 | 17..906 | 99 | | Plus |
BO07780.complete Sequence
1639 bp (1639 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630927
> BO07780.complete
GAAGTTATCAGTCGACATGCGTGGACAACTGTTGCTGAAGGGACCCGCAT
TGGCGAGGAGCTTGAGCCGGTGCCGCGTAAGTGCCGTGCCCCAAATTGGA
TCTGTTCGTCATGTGACCGCCGGCTGTGCAGCTGGTGATACCGTCAAGGG
CGGCAAAGGAATCGTCTTGGGCCTCTACGAAAAGGAGTCGGGCAAGGGAC
CTCGATTAACGCCTGCTGGCGAAAAGTTTGACGATCGTGTGCAGGGCAAG
CTATCGGAATTGGTTTGCGAAACCAAATTAACTGGACGATTGGGTCGCGG
CAAGGTCTTCAACAATGTGGACAGCGAGTTCAGATCCATTTGCGTGGTGG
GCGTTGGTCTCGAAGGCATAGCCTTTAATGAACTGGAAATGCTGGACGAG
GGTATGGAGAATGTGCGCATAGCTGCTGGAATCGGTGCCCGATCATTACA
AAGTATTGGCTGCTCGGAAGTGCATGTGGATAATATGGACTATGCCGAAC
AGGCAGCCGAAGGTGCTGCACTGGCCATTTGGCGATATGAGGAGAATCTG
GCGAAGAAGTATCGTAGCACTATACCGAAACTGGAGCTGCATGGTTCACC
GGATGTCGAGTCCTGGACAAGGGGCCTCTTCAAGGCAGAGGCACAGAATT
TGGCCAGAAGACTGTGTGATGCCCCAGCCAATTGTATGACACCGACAATT
GTGGCACAGGCTGCAGTGGATTCACTATGCCCATGCGGCATCACCGTAGA
GGTTCGCACCATGGAATGGATTGAACAGCAACATCTGAACTCCTTCCTGA
TGATTGCCAAAGGCAGTTGCGAACCACCCGTTCTCCTTGAGGTGGCCTAT
TGCGGCACCGCACCGGAAGATAAGCCCATTCTGCTGGTGGGTCAAGGCAT
AACCTTCAATTCAGGTGGCATCAATCTGCGTCCTTGCAAGGGCATGGATG
AATTCCGCGGAGATCTCACTGGAGCGGCATGCATTTTGGCCGCCATGCGC
GCAGCAGCTGCTCTATCTTTGCCCATCAATATAACTGCTGTGATACCACT
GTGCGAGAATCTGCCGTCTGGAATGTCCTGCAAGCCTGGCGATGTGGTGA
CCTTACTCAATTCCAAATCTCTGGCGGTGCGTAATATAAGTCGAACAGGA
GTGGTGGTCATCTCGGATCCCATGCTTTATGGTCAGATAACATACAAGCC
CAGACTCGTCGTGGATGTGGGCTCCATGTGCAAGGGCGTAAAGAAGGCAG
TTGGCGGTGGAGCCACTGGTATTTGGTCGAATTCTCACTATATATGGAAA
CAATTCCAGCGTGCCGGTTCCTTGACCGGTGATCGCTTGTGGCGATTCCC
CTTATGGCGCTACTACAAGGATCGTGTGGCAGAGCACCTGAGCTTCGACC
TACTGAACGATGGCGAGGGATATGCCTCGTCTTGCCTGGCAGCTGCTGTT
CTCCACGAACTCGTGCCCTGCAGCGATTGGGCCCATTTGGATACCTATGG
TACTGGACTATTGAGCACATATGGATTGATACCCTACTTGACAGCTGGCA
GGATGACTGGCAGACCGACCAGGACATTGGTGCAGTTCCTCTACCAAATC
GCCTGCCCCGAACAGCCTAAAGCAAGCTTTCTAGACCAT
BO07780.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:36:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-Lap3-RD | 1608 | CG32063-PD | 1..1605 | 17..1621 | 8025 | 100 | Plus |
S-Lap3-RC | 1608 | CG32063-PC | 1..1605 | 17..1621 | 8025 | 100 | Plus |
S-Lap3-RB | 1608 | CG32063-PB | 1..1605 | 17..1621 | 8025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:36:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-Lap3-RD | 2640 | CG32063-RD | 178..1782 | 17..1621 | 8025 | 100 | Plus |
S-Lap3-RC | 2146 | CG32063-RC | 178..1782 | 17..1621 | 8025 | 100 | Plus |
S-Lap3-RB | 2520 | CG32063-RB | 552..2156 | 17..1621 | 8025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:36:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10466512..10468116 | 17..1621 | 8025 | 100 | Plus |
3L | 28110227 | 3L | 10491331..10492433 | 207..1309 | 640 | 71 | Plus |
2R | 25286936 | 2R | 13778636..13779696 | 1344..284 | 640 | 70.7 | Minus |
2R | 25286936 | 2R | 13597423..13597741 | 573..891 | 410 | 75.2 | Plus |
2R | 25286936 | 2R | 16491861..16492486 | 473..1098 | 295 | 69.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:36:50 has no hits.
BO07780.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:07 Download gff for
BO07780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32063-RA | 1..1608 | 17..1625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:48 Download gff for
BO07780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32063-RA | 368..1977 | 17..1629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:16 Download gff for
BO07780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-Lap3-RB | 552..2156 | 17..1623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:07 Download gff for
BO07780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32063-RA | 368..1977 | 17..1629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:39 Download gff for
BO07780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
S-Lap3-RB | 552..2156 | 17..1623 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:39 Download gff for
BO07780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10466512..10468116 | 17..1623 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:16 Download gff for
BO07780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10459612..10461216 | 17..1623 | 99 | | Plus |
BO07780.pep Sequence
Translation from 16 to 1639
> BO07780.pep
MRGQLLLKGPALARSLSRCRVSAVPQIGSVRHVTAGCAAGDTVKGGKGIV
LGLYEKESGKGPRLTPAGEKFDDRVQGKLSELVCETKLTGRLGRGKVFNN
VDSEFRSICVVGVGLEGIAFNELEMLDEGMENVRIAAGIGARSLQSIGCS
EVHVDNMDYAEQAAEGAALAIWRYEENLAKKYRSTIPKLELHGSPDVESW
TRGLFKAEAQNLARRLCDAPANCMTPTIVAQAAVDSLCPCGITVEVRTME
WIEQQHLNSFLMIAKGSCEPPVLLEVAYCGTAPEDKPILLVGQGITFNSG
GINLRPCKGMDEFRGDLTGAACILAAMRAAAALSLPINITAVIPLCENLP
SGMSCKPGDVVTLLNSKSLAVRNISRTGVVVISDPMLYGQITYKPRLVVD
VGSMCKGVKKAVGGGATGIWSNSHYIWKQFQRAGSLTGDRLWRFPLWRYY
KDRVAEHLSFDLLNDGEGYASSCLAAAVLHELVPCSDWAHLDTYGTGLLS
TYGLIPYLTAGRMTGRPTRTLVQFLYQIACPEQPKASFLDH
BO07780.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:33:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
S-Lap3-PD | 535 | CG32063-PD | 1..535 | 1..535 | 2802 | 100 | Plus |
S-Lap3-PC | 535 | CG32063-PC | 1..535 | 1..535 | 2802 | 100 | Plus |
S-Lap3-PB | 535 | CG32063-PB | 1..535 | 1..535 | 2802 | 100 | Plus |
S-Lap7-PB | 527 | CG13340-PB | 10..525 | 15..532 | 1989 | 70.8 | Plus |
S-Lap7-PA | 527 | CG13340-PA | 10..525 | 15..532 | 1989 | 70.8 | Plus |