Clone Sequence Records
BO07784.3prime Sequence
940 bp (824 high quality bases) assembled on 2006-01-06
> BO07784.3prime
ATGGTCTAGAAAGCTTGCGCTTAATTCGCTGCCATCCTTAATCTTTTGAA
TGAATGCACTTAATTCTTGCGCCGAATACGATTTCTTTCGGCTCTTCTTC
GGCGGCGCGGCTTCCATAGATGACGGTTCACGTTTGGTGAAGTGTCTGTA
CTCGGGCGAAATGGACTCCAGTTGCAGCAGTCTATTTTCCACTCGTTTGA
TTCTACTGAAAATGTTTTCCTCGTTGTCGGTGGTTAGACCCATGTACGAT
TCAATTGCCTGTAGTCGTGAATTGGGTAGCGATTTCCTCATTTCTTTGGT
TGGATCCGTTTGACCGTCACGCGATCCCATTAGTTTATTCAGTTCGAGTT
CGTAGTTGGGTCGCATTTCCATTTGCTGAGGTCCGCATCGGTTGTTTACT
CGTCGGACTTTTAAATGGCAATTTGACTGCTCCTGCTTAATAATTGTGCT
CTGCGTTCGAGCGCAGGAATCGCTCAAGTTTTGGTCTGAGCTGACAAAAG
ACGATTTGAAGTCAATTACATTTTGTGAGTTTATTTCGTCTCGTTTTCTG
TTGACAAAACATTCTAAACGCTTGGTTAACTCAGCGTCATTAACTCTAAT
TTGCACCAGAGTTCGCGGGACGTCATGTGACTCCTCAACTTTGCAGGGAC
AAGCGGCGTAGTTGAAGCCACTTTTCGATTTCTTAGGCCTGATGGACTCC
TTGTTCTCCTTCCATTCGCTGTCGTTATCGCCGTCGTAGATTTCCTTTTT
CCAGATGGGAACCCGAGTTTTTAGCTGGTCTATTGCAAAAGATACTGATT
CTAAGGCCTCAGAACGATGTGGTGACGAGGCGGCTATAACTACACTGGCT
TCGCATACGGGCACTGTTCCAATCGATGATATATGACTATGTGCTTCAGA
TCGAGCCACTTTAGATCGAGATCTGAGCATATTTTATTCA
BO07784.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10238-PA | 1104 | CG10238-RA | 250..1101 | 870..19 | 4260 | 100 | Minus |
CG10238-PA | 1104 | CG10238-RA | 208..250 | 911..869 | 215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:28:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42503-RA | 1420 | CG42503-RA | 475..1397 | 940..19 | 4545 | 99.7 | Minus |
Mocs2-RA | 1420 | CG10238-RA | 475..1397 | 940..19 | 4545 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:28:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25126167..25126442 | 408..683 | 1380 | 100 | Plus |
3R | 32079331 | 3R | 25125834..25126104 | 139..409 | 1355 | 100 | Plus |
3R | 32079331 | 3R | 25126567..25126824 | 684..940 | 1150 | 97.3 | Plus |
3R | 32079331 | 3R | 25125655..25125774 | 19..138 | 600 | 100 | Plus |
Y | 3667352 | Y | 3024149..3024268 | 19..138 | 555 | 97.5 | Plus |
Y | 3667352 | Y | 3024314..3024414 | 139..240 | 445 | 98 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:28:49 has no hits.
BO07784.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:06 Download gff for
BO07784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10238-PA | 180..1104 | 15..939 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:40 Download gff for
BO07784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10238-PA | 180..1104 | 15..939 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:12:43 Download gff for
BO07784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42503-RA | 476..1400 | 15..939 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:06:18 Download gff for
BO07784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mocs2-RA | 476..1400 | 15..939 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:06:18 Download gff for
BO07784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25125652..25125774 | 15..138 | 98 | <- | Plus |
3R | 25125834..25126102 | 139..407 | 100 | <- | Plus |
3R | 25126167..25126442 | 408..683 | 100 | <- | Plus |
3R | 25126567..25126823 | 684..939 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:12:43 Download gff for
BO07784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20951374..20951496 | 15..138 | 98 | <- | Plus |
arm_3R | 20951556..20951824 | 139..407 | 100 | <- | Plus |
arm_3R | 20951889..20952164 | 408..683 | 100 | <- | Plus |
arm_3R | 20952289..20952545 | 684..939 | 98 | | Plus |
BO07784.5prime Sequence
873 bp (798 high quality bases) assembled on 2006-01-06
> BO07784.5prime
GAAGTTATCAGTCGACATGGATCACGTGAAATTGGTAAACGACCCCATAG
ATATCGCTCATATCCATCAGTTGCTGGCCGATGAAGGCTGTGGAGCCTCA
TCCGTTTTCGTGGGCACTACGCGCGATAATTTTCAAGGGAAAAAGGTGCT
GTCATTGGCGTACGAGGCCTACGATAGCATGGCACTCAAGGAAATGAATA
AAATATGCTCAGATCTCCGATCTAAGTGGCTCGATCTGAAGCACATAGTC
ATATATCATCGATTGGGAACAGTGCCCGTATGCGAAGCCAGTGTAGTTAT
AGCCGCCTCGTCACCACATCGTTCTGAGGCCTTAGAATCAGTATCTTTTG
CAATAGACCAGCTAAAAACTCGGGTTCCCATCTGGAAAAAGGAAATCTAC
GACGGCGATAACGACAGCGAATGGAAGGAGAACAAGGAGTCCATCAGGCC
TAAGAAATCGAAAAGTGGCTTCAACTACGCCGCTTGTCCCTGCAAAGTTG
AGGAGTCACATGACGTCCCGCGAACTCTGGTGCAAATTAGAGTTAATGAC
GCTGAGTTAACCAAGCGTTTAGAATGTTTTGTCAACAGAAAACGAGACGA
AATAAACTCACAAAATGTAATTGACTTCAAATCGTCTTTTGTCAGCTCAG
ACCAAAACTTGAGCGATTCCTGCGCTCGAACGCAGAGCACAATTATTAAG
CAGGAGCAGTCAAATTGCCATTTAAAAGTCCGACGAGTAAACAACCGATG
CGGACCTCAGCAAATGGAAATGCGACCCAACTACGAACTCGAACTGAATA
AACTAATGGGATCGCGTGACGGTCAAACGGATCCAACCAAAGAAATGAGG
AAATCGCTACCCAATTCACGACT
BO07784.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10238-PA | 1104 | CG10238-RA | 1..857 | 17..873 | 4285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:05:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42503-RA | 1420 | CG42503-RA | 296..1153 | 16..873 | 4290 | 100 | Plus |
Mocs2-RA | 1420 | CG10238-RA | 296..1153 | 16..873 | 4290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:05:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25126567..25126875 | 452..144 | 1545 | 100 | Minus |
3R | 32079331 | 3R | 25126167..25126442 | 728..453 | 1380 | 100 | Minus |
3R | 32079331 | 3R | 25125958..25126104 | 873..727 | 735 | 100 | Minus |
3R | 32079331 | 3R | 25126932..25127064 | 148..16 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:05:08 has no hits.
BO07784.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:07 Download gff for
BO07784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10238-PA | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:42 Download gff for
BO07784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10238-PA | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:46:23 Download gff for
BO07784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42503-RA | 291..1153 | 8..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:03:25 Download gff for
BO07784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mocs2-RA | 291..1153 | 8..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:03:25 Download gff for
BO07784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25125958..25126102 | 729..873 | 100 | <- | Minus |
3R | 25126167..25126442 | 453..728 | 100 | <- | Minus |
3R | 25126567..25126873 | 146..452 | 100 | <- | Minus |
3R | 25126935..25127069 | 8..145 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:46:23 Download gff for
BO07784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20951680..20951824 | 729..873 | 100 | <- | Minus |
arm_3R | 20951889..20952164 | 453..728 | 100 | <- | Minus |
arm_3R | 20952289..20952595 | 146..452 | 100 | <- | Minus |
arm_3R | 20952657..20952791 | 8..145 | 97 | | Minus |
BO07784.complete Sequence
1135 bp (1135 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630928
> BO07784.complete
GAAGTTATCAGTCGACATGGATCACGTGAAATTGGTAAACGACCCCATAG
ATATCGCTCATATCCATCAGTTGCTGGCCGATGAAGGCTGTGGAGCCTCA
TCCGTTTTCGTGGGCACTACGCGCGATAATTTTCAAGGGAAAAAGGTGCT
GTCATTGGCGTACGAGGCCTACGATAGCATGGCACTCAAGGAAATGAATA
AAATATGCTCAGATCTCCGATCTAAGTGGCTCGATCTGAAGCACATAGTC
ATATATCATCGATTGGGAACAGTGCCCGTATGCGAAGCCAGTGTAGTTAT
AGCCGCCTCGTCACCACATCGTTCTGAGGCCTTAGAATCAGTATCTTTTG
CAATAGACCAGCTAAAAACTCGGGTTCCCATCTGGAAAAAGGAAATCTAC
GACGGCGATAACGACAGCGAATGGAAGGAGAACAAGGAGTCCATCAGGCC
TAAGAAATCGAAAAGTGGCTTCAACTACGCCGCTTGTCCCTGCAAAGTTG
AGGAGTCACATGACGTCCCGCGAACTCTGGTGCAAATTAGAGTTAATGAC
GCTGAGTTAACCAAGCGTTTAGAATGTTTTGTCAACAGAAAACGAGACGA
AATAAACTCACAAAATGTAATTGACTTCAAATCGTCTTTTGTCAGCTCAG
ACCAAAACTTGAGCGATTCCTGCGCTCGAACGCAGAGCACAATTATTAAG
CAGGAGCAGTCAAATTGCCATTTAAAAGTCCGACGAGTAAACAACCGATG
CGGACCTCAGCAAATGGAAATGCGACCCAACTACGAACTCGAACTGAATA
AACTAATGGGATCGCGTGACGGTCAAACGGATCCAACCAAAGAAATGAGG
AAATCGCTACCCAATTCACGACTACAGGCAATTGAATCGTACATGGGTCT
AACCACCGACAACGAGGAAAACATTTTCAGTAGAATCAAACGAGTGGAAA
ATAGACTGCTGCAACTGGAGTCCATTTCGCCCGAGTACAGACACTTCACC
AAACGTGAACCGTCATCTATGGAAGCCGCGCCGCCGAAGAAGAGCCGAAA
GAAATCGTATTCGGCGCAAGAATTAAGTGCATTCATTCAAAAGATTAAGG
ATGGCAGCGAATTAAGCGCAAGCTTTCTAGACCAT
BO07784.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:03:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mocs2-RA | 1104 | CG10238-PA | 1..1101 | 17..1117 | 5505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:03:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42503-RA | 1420 | CG42503-RA | 296..1397 | 16..1117 | 5510 | 100 | Plus |
Mocs2-RA | 1420 | CG10238-RA | 296..1397 | 16..1117 | 5510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:03:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25126567..25126875 | 452..144 | 1545 | 100 | Minus |
3R | 32079331 | 3R | 25126167..25126442 | 728..453 | 1380 | 100 | Minus |
3R | 32079331 | 3R | 25125834..25126104 | 997..727 | 1355 | 100 | Minus |
3R | 32079331 | 3R | 25126932..25127064 | 148..16 | 665 | 100 | Minus |
3R | 32079331 | 3R | 25125655..25125774 | 1117..998 | 600 | 100 | Minus |
Y | 3667352 | Y | 3024149..3024268 | 1117..998 | 555 | 97.5 | Minus |
Y | 3667352 | Y | 3024314..3024414 | 997..896 | 445 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:03:06 has no hits.
BO07784.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:53 Download gff for
BO07784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10238-RA | 1..1104 | 17..1121 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:32 Download gff for
BO07784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10238-RA | 278..1387 | 8..1121 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:29 Download gff for
BO07784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42503-RA | 297..1397 | 17..1119 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:53 Download gff for
BO07784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10238-RA | 278..1387 | 8..1121 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:44 Download gff for
BO07784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mocs2-RA | 297..1397 | 17..1119 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:44 Download gff for
BO07784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25126567..25126873 | 146..452 | 100 | <- | Minus |
3R | 25126935..25127063 | 17..145 | 100 | | Minus |
3R | 25125653..25125774 | 998..1119 | 98 | <- | Minus |
3R | 25125834..25126102 | 729..997 | 100 | <- | Minus |
3R | 25126167..25126442 | 453..728 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:29 Download gff for
BO07784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20951375..20951496 | 998..1119 | 98 | <- | Minus |
arm_3R | 20951556..20951824 | 729..997 | 100 | <- | Minus |
arm_3R | 20951889..20952164 | 453..728 | 100 | <- | Minus |
arm_3R | 20952289..20952595 | 146..452 | 100 | <- | Minus |
arm_3R | 20952657..20952785 | 17..145 | 100 | | Minus |
BO07784.pep Sequence
Translation from 16 to 1135
> BO07784.pep
MDHVKLVNDPIDIAHIHQLLADEGCGASSVFVGTTRDNFQGKKVLSLAYE
AYDSMALKEMNKICSDLRSKWLDLKHIVIYHRLGTVPVCEASVVIAASSP
HRSEALESVSFAIDQLKTRVPIWKKEIYDGDNDSEWKENKESIRPKKSKS
GFNYAACPCKVEESHDVPRTLVQIRVNDAELTKRLECFVNRKRDEINSQN
VIDFKSSFVSSDQNLSDSCARTQSTIIKQEQSNCHLKVRRVNNRCGPQQM
EMRPNYELELNKLMGSRDGQTDPTKEMRKSLPNSRLQAIESYMGLTTDNE
ENIFSRIKRVENRLLQLESISPEYRHFTKREPSSMEAAPPKKSRKKSYSA
QELSAFIQKIKDGSELSASFLDH
BO07784.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:48:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mocs2-PA | 367 | CG10238-PA | 1..367 | 1..367 | 1895 | 100 | Plus |