Clone BO07784 Report

Search the DGRC for BO07784

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:77
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptMocs2-RA
Protein status:BO07784.pep: validated full length
Sequenced Size:1135

Clone Sequence Records

BO07784.3prime Sequence

940 bp (824 high quality bases) assembled on 2006-01-06

> BO07784.3prime
ATGGTCTAGAAAGCTTGCGCTTAATTCGCTGCCATCCTTAATCTTTTGAA
TGAATGCACTTAATTCTTGCGCCGAATACGATTTCTTTCGGCTCTTCTTC
GGCGGCGCGGCTTCCATAGATGACGGTTCACGTTTGGTGAAGTGTCTGTA
CTCGGGCGAAATGGACTCCAGTTGCAGCAGTCTATTTTCCACTCGTTTGA
TTCTACTGAAAATGTTTTCCTCGTTGTCGGTGGTTAGACCCATGTACGAT
TCAATTGCCTGTAGTCGTGAATTGGGTAGCGATTTCCTCATTTCTTTGGT
TGGATCCGTTTGACCGTCACGCGATCCCATTAGTTTATTCAGTTCGAGTT
CGTAGTTGGGTCGCATTTCCATTTGCTGAGGTCCGCATCGGTTGTTTACT
CGTCGGACTTTTAAATGGCAATTTGACTGCTCCTGCTTAATAATTGTGCT
CTGCGTTCGAGCGCAGGAATCGCTCAAGTTTTGGTCTGAGCTGACAAAAG
ACGATTTGAAGTCAATTACATTTTGTGAGTTTATTTCGTCTCGTTTTCTG
TTGACAAAACATTCTAAACGCTTGGTTAACTCAGCGTCATTAACTCTAAT
TTGCACCAGAGTTCGCGGGACGTCATGTGACTCCTCAACTTTGCAGGGAC
AAGCGGCGTAGTTGAAGCCACTTTTCGATTTCTTAGGCCTGATGGACTCC
TTGTTCTCCTTCCATTCGCTGTCGTTATCGCCGTCGTAGATTTCCTTTTT
CCAGATGGGAACCCGAGTTTTTAGCTGGTCTATTGCAAAAGATACTGATT
CTAAGGCCTCAGAACGATGTGGTGACGAGGCGGCTATAACTACACTGGCT
TCGCATACGGGCACTGTTCCAATCGATGATATATGACTATGTGCTTCAGA
TCGAGCCACTTTAGATCGAGATCTGAGCATATTTTATTCA

BO07784.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10238-PA 1104 CG10238-RA 250..1101 870..19 4260 100 Minus
CG10238-PA 1104 CG10238-RA 208..250 911..869 215 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG42503-RA 1420 CG42503-RA 475..1397 940..19 4545 99.7 Minus
Mocs2-RA 1420 CG10238-RA 475..1397 940..19 4545 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25126167..25126442 408..683 1380 100 Plus
3R 32079331 3R 25125834..25126104 139..409 1355 100 Plus
3R 32079331 3R 25126567..25126824 684..940 1150 97.3 Plus
3R 32079331 3R 25125655..25125774 19..138 600 100 Plus
Y 3667352 Y 3024149..3024268 19..138 555 97.5 Plus
Y 3667352 Y 3024314..3024414 139..240 445 98 Plus
Blast to na_te.dros performed on 2015-02-13 16:28:49 has no hits.

BO07784.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:06 Download gff for BO07784.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10238-PA 180..1104 15..939 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:40 Download gff for BO07784.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10238-PA 180..1104 15..939 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:12:43 Download gff for BO07784.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42503-RA 476..1400 15..939 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:06:18 Download gff for BO07784.3prime
Subject Subject Range Query Range Percent Splice Strand
Mocs2-RA 476..1400 15..939 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:06:18 Download gff for BO07784.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25125652..25125774 15..138 98 <- Plus
3R 25125834..25126102 139..407 100 <- Plus
3R 25126167..25126442 408..683 100 <- Plus
3R 25126567..25126823 684..939 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:12:43 Download gff for BO07784.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20951374..20951496 15..138 98 <- Plus
arm_3R 20951556..20951824 139..407 100 <- Plus
arm_3R 20951889..20952164 408..683 100 <- Plus
arm_3R 20952289..20952545 684..939 98   Plus

BO07784.5prime Sequence

873 bp (798 high quality bases) assembled on 2006-01-06

> BO07784.5prime
GAAGTTATCAGTCGACATGGATCACGTGAAATTGGTAAACGACCCCATAG
ATATCGCTCATATCCATCAGTTGCTGGCCGATGAAGGCTGTGGAGCCTCA
TCCGTTTTCGTGGGCACTACGCGCGATAATTTTCAAGGGAAAAAGGTGCT
GTCATTGGCGTACGAGGCCTACGATAGCATGGCACTCAAGGAAATGAATA
AAATATGCTCAGATCTCCGATCTAAGTGGCTCGATCTGAAGCACATAGTC
ATATATCATCGATTGGGAACAGTGCCCGTATGCGAAGCCAGTGTAGTTAT
AGCCGCCTCGTCACCACATCGTTCTGAGGCCTTAGAATCAGTATCTTTTG
CAATAGACCAGCTAAAAACTCGGGTTCCCATCTGGAAAAAGGAAATCTAC
GACGGCGATAACGACAGCGAATGGAAGGAGAACAAGGAGTCCATCAGGCC
TAAGAAATCGAAAAGTGGCTTCAACTACGCCGCTTGTCCCTGCAAAGTTG
AGGAGTCACATGACGTCCCGCGAACTCTGGTGCAAATTAGAGTTAATGAC
GCTGAGTTAACCAAGCGTTTAGAATGTTTTGTCAACAGAAAACGAGACGA
AATAAACTCACAAAATGTAATTGACTTCAAATCGTCTTTTGTCAGCTCAG
ACCAAAACTTGAGCGATTCCTGCGCTCGAACGCAGAGCACAATTATTAAG
CAGGAGCAGTCAAATTGCCATTTAAAAGTCCGACGAGTAAACAACCGATG
CGGACCTCAGCAAATGGAAATGCGACCCAACTACGAACTCGAACTGAATA
AACTAATGGGATCGCGTGACGGTCAAACGGATCCAACCAAAGAAATGAGG
AAATCGCTACCCAATTCACGACT

BO07784.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10238-PA 1104 CG10238-RA 1..857 17..873 4285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG42503-RA 1420 CG42503-RA 296..1153 16..873 4290 100 Plus
Mocs2-RA 1420 CG10238-RA 296..1153 16..873 4290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25126567..25126875 452..144 1545 100 Minus
3R 32079331 3R 25126167..25126442 728..453 1380 100 Minus
3R 32079331 3R 25125958..25126104 873..727 735 100 Minus
3R 32079331 3R 25126932..25127064 148..16 665 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:05:08 has no hits.

BO07784.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:07 Download gff for BO07784.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10238-PA 1..857 17..873 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:42 Download gff for BO07784.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10238-PA 1..857 17..873 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:46:23 Download gff for BO07784.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42503-RA 291..1153 8..873 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:03:25 Download gff for BO07784.5prime
Subject Subject Range Query Range Percent Splice Strand
Mocs2-RA 291..1153 8..873 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:03:25 Download gff for BO07784.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25125958..25126102 729..873 100 <- Minus
3R 25126167..25126442 453..728 100 <- Minus
3R 25126567..25126873 146..452 100 <- Minus
3R 25126935..25127069 8..145 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:46:23 Download gff for BO07784.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20951680..20951824 729..873 100 <- Minus
arm_3R 20951889..20952164 453..728 100 <- Minus
arm_3R 20952289..20952595 146..452 100 <- Minus
arm_3R 20952657..20952791 8..145 97   Minus

BO07784.complete Sequence

1135 bp (1135 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630928

> BO07784.complete
GAAGTTATCAGTCGACATGGATCACGTGAAATTGGTAAACGACCCCATAG
ATATCGCTCATATCCATCAGTTGCTGGCCGATGAAGGCTGTGGAGCCTCA
TCCGTTTTCGTGGGCACTACGCGCGATAATTTTCAAGGGAAAAAGGTGCT
GTCATTGGCGTACGAGGCCTACGATAGCATGGCACTCAAGGAAATGAATA
AAATATGCTCAGATCTCCGATCTAAGTGGCTCGATCTGAAGCACATAGTC
ATATATCATCGATTGGGAACAGTGCCCGTATGCGAAGCCAGTGTAGTTAT
AGCCGCCTCGTCACCACATCGTTCTGAGGCCTTAGAATCAGTATCTTTTG
CAATAGACCAGCTAAAAACTCGGGTTCCCATCTGGAAAAAGGAAATCTAC
GACGGCGATAACGACAGCGAATGGAAGGAGAACAAGGAGTCCATCAGGCC
TAAGAAATCGAAAAGTGGCTTCAACTACGCCGCTTGTCCCTGCAAAGTTG
AGGAGTCACATGACGTCCCGCGAACTCTGGTGCAAATTAGAGTTAATGAC
GCTGAGTTAACCAAGCGTTTAGAATGTTTTGTCAACAGAAAACGAGACGA
AATAAACTCACAAAATGTAATTGACTTCAAATCGTCTTTTGTCAGCTCAG
ACCAAAACTTGAGCGATTCCTGCGCTCGAACGCAGAGCACAATTATTAAG
CAGGAGCAGTCAAATTGCCATTTAAAAGTCCGACGAGTAAACAACCGATG
CGGACCTCAGCAAATGGAAATGCGACCCAACTACGAACTCGAACTGAATA
AACTAATGGGATCGCGTGACGGTCAAACGGATCCAACCAAAGAAATGAGG
AAATCGCTACCCAATTCACGACTACAGGCAATTGAATCGTACATGGGTCT
AACCACCGACAACGAGGAAAACATTTTCAGTAGAATCAAACGAGTGGAAA
ATAGACTGCTGCAACTGGAGTCCATTTCGCCCGAGTACAGACACTTCACC
AAACGTGAACCGTCATCTATGGAAGCCGCGCCGCCGAAGAAGAGCCGAAA
GAAATCGTATTCGGCGCAAGAATTAAGTGCATTCATTCAAAAGATTAAGG
ATGGCAGCGAATTAAGCGCAAGCTTTCTAGACCAT

BO07784.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
Mocs2-RA 1104 CG10238-PA 1..1101 17..1117 5505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG42503-RA 1420 CG42503-RA 296..1397 16..1117 5510 100 Plus
Mocs2-RA 1420 CG10238-RA 296..1397 16..1117 5510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25126567..25126875 452..144 1545 100 Minus
3R 32079331 3R 25126167..25126442 728..453 1380 100 Minus
3R 32079331 3R 25125834..25126104 997..727 1355 100 Minus
3R 32079331 3R 25126932..25127064 148..16 665 100 Minus
3R 32079331 3R 25125655..25125774 1117..998 600 100 Minus
Y 3667352 Y 3024149..3024268 1117..998 555 97.5 Minus
Y 3667352 Y 3024314..3024414 997..896 445 98 Minus
Blast to na_te.dros performed on 2014-11-27 07:03:06 has no hits.

BO07784.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:53 Download gff for BO07784.complete
Subject Subject Range Query Range Percent Splice Strand
CG10238-RA 1..1104 17..1121 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:32 Download gff for BO07784.complete
Subject Subject Range Query Range Percent Splice Strand
CG10238-RA 278..1387 8..1121 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:29 Download gff for BO07784.complete
Subject Subject Range Query Range Percent Splice Strand
CG42503-RA 297..1397 17..1119 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:53 Download gff for BO07784.complete
Subject Subject Range Query Range Percent Splice Strand
CG10238-RA 278..1387 8..1121 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:44 Download gff for BO07784.complete
Subject Subject Range Query Range Percent Splice Strand
Mocs2-RA 297..1397 17..1119 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:44 Download gff for BO07784.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25126567..25126873 146..452 100 <- Minus
3R 25126935..25127063 17..145 100   Minus
3R 25125653..25125774 998..1119 98 <- Minus
3R 25125834..25126102 729..997 100 <- Minus
3R 25126167..25126442 453..728 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:29 Download gff for BO07784.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20951375..20951496 998..1119 98 <- Minus
arm_3R 20951556..20951824 729..997 100 <- Minus
arm_3R 20951889..20952164 453..728 100 <- Minus
arm_3R 20952289..20952595 146..452 100 <- Minus
arm_3R 20952657..20952785 17..145 100   Minus

BO07784.pep Sequence

Translation from 16 to 1135

> BO07784.pep
MDHVKLVNDPIDIAHIHQLLADEGCGASSVFVGTTRDNFQGKKVLSLAYE
AYDSMALKEMNKICSDLRSKWLDLKHIVIYHRLGTVPVCEASVVIAASSP
HRSEALESVSFAIDQLKTRVPIWKKEIYDGDNDSEWKENKESIRPKKSKS
GFNYAACPCKVEESHDVPRTLVQIRVNDAELTKRLECFVNRKRDEINSQN
VIDFKSSFVSSDQNLSDSCARTQSTIIKQEQSNCHLKVRRVNNRCGPQQM
EMRPNYELELNKLMGSRDGQTDPTKEMRKSLPNSRLQAIESYMGLTTDNE
ENIFSRIKRVENRLLQLESISPEYRHFTKREPSSMEAAPPKKSRKKSYSA
QELSAFIQKIKDGSELSASFLDH

BO07784.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
Mocs2-PA 367 CG10238-PA 1..367 1..367 1895 100 Plus