Clone Sequence Records
BO07787.3prime Sequence
914 bp (862 high quality bases) assembled on 2006-01-06
> BO07787.3prime
ATGGTCTAGAAAGCTTGCCAAGTTTCCTCGCTTGGCTTGTTCAATTTCAA
TGGCCGTGAACAAGGACTTAAAGTTGCCAGCGCCAAATCCATTGTGATTG
TAGCGTTGGATAACTTCCAGGAAGAGGGTCGGTCTATCCTGGCAGTTCTT
TGTGAAGATCTGCAGCAGATATCCGTTCTCGTCGAAGTCAATCAAAATGT
TCAACTTCTTCAAGACCTCCATGTCCTCCTTGATCTTGGTGCGGCTGTGC
GAGAGCTGCTCCTGAAGGATCTCGTAGTACGAGGATGGGATGGTCAGGAA
CTCGGTTCCTCGAGCCTTTAGGTTGCTCACCGCCTCGATAATGTCATCCG
TATTAAGAGCAATGTGCTGGACACCACCGCCGCCGTAGTACTCCACGTAC
TCCTGGATCTGTGACTTCTTTTTCCCATTGGCTGGCTCATTGATCGGCAT
CTTCACCGTCTCCTCGTAGTTTGCCATCACGATGGACCGCAGGGCGGAGT
ATTCCGTGTGAATCTGCGAGTCATCCACGGACCAGAAGCGGTGGAACTGC
AGGATTCTCTCGTACCAGGAGGCCACGCTCTCCATCTGCAGATCCGGCTG
GTTGCCCACCACGTGATCAATGAAGTTCAGCTTGGTGGAGGGCAATCCGT
TTAGAAGGACATCTTTGGGCGACCGCTGGAATCCAGGCAGGAAATCTCCA
GCGTACCCATTGCGCTCCACGAAAGTGTGGGTAGTGTCGCCGTACGTCTT
GATGGTAGCGAATCTCACGAATCCCTGATCATCGCTCTCCTCCCAGATGT
CGCGGACCACTTCGGCCCCACGGGACACGGCCAGTGTGAAAATGGCATTC
AAATCCTCCACTTCGAAGGCTACATCCTTGACACCGTCGCCGTGGCGCAT
GTCGACTGATAACT
BO07787.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11796-PA | 1143 | CG11796-RA | 259..1140 | 900..19 | 4410 | 100 | Minus |
CG11796-PB | 885 | CG11796-RB | 1..882 | 900..19 | 4410 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:05:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11796-RB | 1518 | CG11796-RB | 574..1455 | 900..19 | 4410 | 100 | Minus |
CG11796-RA | 1301 | CG11796-RA | 357..1238 | 900..19 | 4410 | 100 | Minus |
CG5872-RB | 1866 | CG5872-RB | 1725..1796 | 19..90 | 360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:05:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20438364..20439019 | 90..745 | 3280 | 100 | Plus |
3L | 28110227 | 3L | 20439077..20439232 | 745..900 | 780 | 100 | Plus |
3L | 28110227 | 3L | 20438229..20438300 | 19..90 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:05:16 has no hits.
BO07787.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:12 Download gff for
BO07787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-PA | 259..1143 | 16..900 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:48 Download gff for
BO07787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-PB | 1..885 | 16..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:46:25 Download gff for
BO07787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RA | 357..1242 | 15..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:03:36 Download gff for
BO07787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RA | 357..1242 | 15..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:03:36 Download gff for
BO07787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20438225..20438300 | 15..90 | 97 | <- | Plus |
3L | 20438365..20439018 | 91..744 | 100 | <- | Plus |
3L | 20439077..20439232 | 745..900 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:46:25 Download gff for
BO07787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20431325..20431400 | 15..90 | 97 | <- | Plus |
arm_3L | 20431465..20432118 | 91..744 | 100 | <- | Plus |
arm_3L | 20432177..20432332 | 745..900 | 100 | | Plus |
BO07787.5prime Sequence
865 bp (838 high quality bases) assembled on 2006-01-06
> BO07787.5prime
GAAGTTATCAGTCGACATGCGCCACGGCGACGGTGTCAAGGATGTAGCCT
TCGAAGTGGAGGATTTGAATGCCATTTTCACACTGGCCGTGTCCCGTGGG
GCCGAAGTGGTCCGCGACATCTGGGAGGAGAGCGATGATCAGGGATTCGT
GAGATTCGCTACCATCAAGACGTACGGCGACACTACCCACACTTTCGTGG
AGCGCAATGGGTACGCTGGAGATTTCCTGCCTGGATTCCAGCGGTCGCCC
AAAGATGTCCTTCTAAACGGATTGCCCTCCACCAAGCTGAACTTCATTGA
TCACGTGGTGGGCAACCAGCCGGATCTGCAGATGGAGAGCGTGGCCTCCT
GGTACGAGAGAATCCTGCAGTTCCACCGCTTCTGGTCCGTGGATGACTCG
CAGATTCACACGGAATACTCCGCCCTGCGGTCCATCGTGATGGCAAACTA
CGAGGAGACGGTGAAGATGCCGATCAATGAGCCAGCCAATGGGAAAAAGA
AGTCACAGATCCAGGAGTACGTGGAGTACTACGGCGGCGGTGGTGTCCAG
CACATTGCTCTTAATACGGATGACATTATCGAGGCGGTGAGCAACCTAAA
GGCTCGAGGAACCGAGTTCCTGACCATCCCATCCTCGTACTACGAGATCC
TTCAGGAGCAGCTCTCGCACAGCCGCACCAAGATCAAGGAGGACATGGAG
GTCTTGAAGAAGTTGAACATTTTGATTGACTTCGACGAGAACGGATATCT
GCTGCAGATCTTCACAAAGAACTGCCAGGATAGACCGACCCTCTTCCTGG
AAGTTATCCAACGCTACAATCACAATGGATTTGGCGCTGGGCACTTTAAG
TCTTGTTCACGGCCA
BO07787.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11796-PA | 1143 | CG11796-RA | 259..1094 | 17..852 | 4130 | 99.7 | Plus |
CG11796-PB | 885 | CG11796-RB | 1..836 | 17..852 | 4130 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:28:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11796-RB | 1518 | CG11796-RB | 574..1423 | 17..865 | 4195 | 99.6 | Plus |
CG11796-RA | 1301 | CG11796-RA | 357..1206 | 17..865 | 4195 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:28:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20438364..20439019 | 827..172 | 3280 | 100 | Minus |
3L | 28110227 | 3L | 20439077..20439232 | 172..17 | 780 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:28:57 has no hits.
BO07787.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:13 Download gff for
BO07787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-PA | 259..1107 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:50 Download gff for
BO07787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-PB | 1..849 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:12:45 Download gff for
BO07787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RA | 357..1205 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:06:35 Download gff for
BO07787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RA | 357..1205 | 17..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:06:35 Download gff for
BO07787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20438262..20438300 | 827..864 | 92 | <- | Minus |
3L | 20438365..20439018 | 173..826 | 100 | <- | Minus |
3L | 20439077..20439232 | 17..172 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:12:45 Download gff for
BO07787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20431362..20431400 | 827..864 | 92 | <- | Minus |
arm_3L | 20431465..20432118 | 173..826 | 100 | <- | Minus |
arm_3L | 20432177..20432332 | 17..172 | 100 | | Minus |
BO07787.complete Sequence
916 bp (916 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630929
> BO07787.complete
GAAGTTATCAGTCGACATGCGCCACGGCGACGGTGTCAAGGATGTAGCCT
TCGAAGTGGAGGATTTGAATGCCATTTTCACACTGGCCGTGTCCCGTGGG
GCCGAAGTGGTCCGCGACATCTGGGAGGAGAGCGATGATCAGGGATTCGT
GAGATTCGCTACCATCAAGACGTACGGCGACACTACCCACACTTTCGTGG
AGCGCAATGGGTACGCTGGAGATTTCCTGCCTGGATTCCAGCGGTCGCCC
AAAGATGTCCTTCTAAACGGATTGCCCTCCACCAAGCTGAACTTCATTGA
TCACGTGGTGGGCAACCAGCCGGATCTGCAGATGGAGAGCGTGGCCTCCT
GGTACGAGAGAATCCTGCAGTTCCACCGCTTCTGGTCCGTGGATGACTCG
CAGATTCACACGGAATACTCCGCCCTGCGGTCCATCGTGATGGCAAACTA
CGAGGAGACGGTGAAGATGCCGATCAATGAGCCAGCCAATGGGAAAAAGA
AGTCACAGATCCAGGAGTACGTGGAGTACTACGGCGGCGGTGGTGTCCAG
CACATTGCTCTTAATACGGATGACATTATCGAGGCGGTGAGCAACCTAAA
GGCTCGAGGAACCGAGTTCCTGACCATCCCATCCTCGTACTACGAGATCC
TTCAGGAGCAGCTCTCGCACAGCCGCACCAAGATCAAGGAGGACATGGAG
GTCTTGAAGAAGTTGAACATTTTGATTGACTTCGACGAGAACGGATATCT
GCTGCAGATCTTCACAAAGAACTGCCAGGATAGACCGACCCTCTTCCTGG
AAGTTATCCAACGCTACAATCACAATGGATTTGGCGCTGGCAACTTTAAG
TCCTTGTTCACGGCCATTGAAATTGAACAAGCCAAGCGAGGAAACTTGGC
AAGCTTTCTAGACCAT
BO07787.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:05:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11796-RB | 885 | CG11796-PB | 1..882 | 17..898 | 4410 | 100 | Plus |
CG11796-RA | 1143 | CG11796-PA | 259..1140 | 17..898 | 4410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:05:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11796-RB | 1518 | CG11796-RB | 574..1455 | 17..898 | 4410 | 100 | Plus |
CG11796-RA | 1301 | CG11796-RA | 357..1238 | 17..898 | 4410 | 100 | Plus |
CG5872-RB | 1866 | CG5872-RB | 1725..1796 | 898..827 | 360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:05:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20438364..20439019 | 827..172 | 3280 | 100 | Minus |
3L | 28110227 | 3L | 20439077..20439232 | 172..17 | 780 | 100 | Minus |
3L | 28110227 | 3L | 20438229..20438300 | 898..827 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:05:14 has no hits.
BO07787.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:09 Download gff for
BO07787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RB | 1..885 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:40 Download gff for
BO07787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RB | 568..1453 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:58 Download gff for
BO07787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RA | 357..1238 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:09 Download gff for
BO07787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RB | 568..1453 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:30 Download gff for
BO07787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RA | 357..1238 | 17..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:30 Download gff for
BO07787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20438226..20438300 | 827..900 | 97 | <- | Minus |
3L | 20438365..20439018 | 173..826 | 100 | <- | Minus |
3L | 20439077..20439232 | 17..172 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:58 Download gff for
BO07787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20432177..20432332 | 17..172 | 100 | | Minus |
arm_3L | 20431326..20431400 | 827..900 | 97 | <- | Minus |
arm_3L | 20431465..20432118 | 173..826 | 100 | <- | Minus |
BO07787.pep Sequence
Translation from 16 to 916
> BO07787.pep
MRHGDGVKDVAFEVEDLNAIFTLAVSRGAEVVRDIWEESDDQGFVRFATI
KTYGDTTHTFVERNGYAGDFLPGFQRSPKDVLLNGLPSTKLNFIDHVVGN
QPDLQMESVASWYERILQFHRFWSVDDSQIHTEYSALRSIVMANYEETVK
MPINEPANGKKKSQIQEYVEYYGGGGVQHIALNTDDIIEAVSNLKARGTE
FLTIPSSYYEILQEQLSHSRTKIKEDMEVLKKLNILIDFDENGYLLQIFT
KNCQDRPTLFLEVIQRYNHNGFGAGNFKSLFTAIEIEQAKRGNLASFLDH
BO07787.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11796-PB | 294 | CG11796-PB | 1..294 | 1..294 | 1532 | 100 | Plus |
CG11796-PA | 380 | CG11796-PA | 87..380 | 1..294 | 1532 | 100 | Plus |