Clone BO07787 Report

Search the DGRC for BO07787

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:77
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG11796-RB
Protein status:BO07787.pep: validated full length
Sequenced Size:916

Clone Sequence Records

BO07787.3prime Sequence

914 bp (862 high quality bases) assembled on 2006-01-06

> BO07787.3prime
ATGGTCTAGAAAGCTTGCCAAGTTTCCTCGCTTGGCTTGTTCAATTTCAA
TGGCCGTGAACAAGGACTTAAAGTTGCCAGCGCCAAATCCATTGTGATTG
TAGCGTTGGATAACTTCCAGGAAGAGGGTCGGTCTATCCTGGCAGTTCTT
TGTGAAGATCTGCAGCAGATATCCGTTCTCGTCGAAGTCAATCAAAATGT
TCAACTTCTTCAAGACCTCCATGTCCTCCTTGATCTTGGTGCGGCTGTGC
GAGAGCTGCTCCTGAAGGATCTCGTAGTACGAGGATGGGATGGTCAGGAA
CTCGGTTCCTCGAGCCTTTAGGTTGCTCACCGCCTCGATAATGTCATCCG
TATTAAGAGCAATGTGCTGGACACCACCGCCGCCGTAGTACTCCACGTAC
TCCTGGATCTGTGACTTCTTTTTCCCATTGGCTGGCTCATTGATCGGCAT
CTTCACCGTCTCCTCGTAGTTTGCCATCACGATGGACCGCAGGGCGGAGT
ATTCCGTGTGAATCTGCGAGTCATCCACGGACCAGAAGCGGTGGAACTGC
AGGATTCTCTCGTACCAGGAGGCCACGCTCTCCATCTGCAGATCCGGCTG
GTTGCCCACCACGTGATCAATGAAGTTCAGCTTGGTGGAGGGCAATCCGT
TTAGAAGGACATCTTTGGGCGACCGCTGGAATCCAGGCAGGAAATCTCCA
GCGTACCCATTGCGCTCCACGAAAGTGTGGGTAGTGTCGCCGTACGTCTT
GATGGTAGCGAATCTCACGAATCCCTGATCATCGCTCTCCTCCCAGATGT
CGCGGACCACTTCGGCCCCACGGGACACGGCCAGTGTGAAAATGGCATTC
AAATCCTCCACTTCGAAGGCTACATCCTTGACACCGTCGCCGTGGCGCAT
GTCGACTGATAACT

BO07787.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-PA 1143 CG11796-RA 259..1140 900..19 4410 100 Minus
CG11796-PB 885 CG11796-RB 1..882 900..19 4410 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:05:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-RB 1518 CG11796-RB 574..1455 900..19 4410 100 Minus
CG11796-RA 1301 CG11796-RA 357..1238 900..19 4410 100 Minus
CG5872-RB 1866 CG5872-RB 1725..1796 19..90 360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20438364..20439019 90..745 3280 100 Plus
3L 28110227 3L 20439077..20439232 745..900 780 100 Plus
3L 28110227 3L 20438229..20438300 19..90 360 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:05:16 has no hits.

BO07787.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:12 Download gff for BO07787.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11796-PA 259..1143 16..900 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:48 Download gff for BO07787.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11796-PB 1..885 16..900 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:46:25 Download gff for BO07787.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 357..1242 15..900 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:03:36 Download gff for BO07787.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 357..1242 15..900 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:03:36 Download gff for BO07787.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20438225..20438300 15..90 97 <- Plus
3L 20438365..20439018 91..744 100 <- Plus
3L 20439077..20439232 745..900 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:46:25 Download gff for BO07787.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20431325..20431400 15..90 97 <- Plus
arm_3L 20431465..20432118 91..744 100 <- Plus
arm_3L 20432177..20432332 745..900 100   Plus

BO07787.5prime Sequence

865 bp (838 high quality bases) assembled on 2006-01-06

> BO07787.5prime
GAAGTTATCAGTCGACATGCGCCACGGCGACGGTGTCAAGGATGTAGCCT
TCGAAGTGGAGGATTTGAATGCCATTTTCACACTGGCCGTGTCCCGTGGG
GCCGAAGTGGTCCGCGACATCTGGGAGGAGAGCGATGATCAGGGATTCGT
GAGATTCGCTACCATCAAGACGTACGGCGACACTACCCACACTTTCGTGG
AGCGCAATGGGTACGCTGGAGATTTCCTGCCTGGATTCCAGCGGTCGCCC
AAAGATGTCCTTCTAAACGGATTGCCCTCCACCAAGCTGAACTTCATTGA
TCACGTGGTGGGCAACCAGCCGGATCTGCAGATGGAGAGCGTGGCCTCCT
GGTACGAGAGAATCCTGCAGTTCCACCGCTTCTGGTCCGTGGATGACTCG
CAGATTCACACGGAATACTCCGCCCTGCGGTCCATCGTGATGGCAAACTA
CGAGGAGACGGTGAAGATGCCGATCAATGAGCCAGCCAATGGGAAAAAGA
AGTCACAGATCCAGGAGTACGTGGAGTACTACGGCGGCGGTGGTGTCCAG
CACATTGCTCTTAATACGGATGACATTATCGAGGCGGTGAGCAACCTAAA
GGCTCGAGGAACCGAGTTCCTGACCATCCCATCCTCGTACTACGAGATCC
TTCAGGAGCAGCTCTCGCACAGCCGCACCAAGATCAAGGAGGACATGGAG
GTCTTGAAGAAGTTGAACATTTTGATTGACTTCGACGAGAACGGATATCT
GCTGCAGATCTTCACAAAGAACTGCCAGGATAGACCGACCCTCTTCCTGG
AAGTTATCCAACGCTACAATCACAATGGATTTGGCGCTGGGCACTTTAAG
TCTTGTTCACGGCCA

BO07787.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-PA 1143 CG11796-RA 259..1094 17..852 4130 99.7 Plus
CG11796-PB 885 CG11796-RB 1..836 17..852 4130 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-RB 1518 CG11796-RB 574..1423 17..865 4195 99.6 Plus
CG11796-RA 1301 CG11796-RA 357..1206 17..865 4195 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:28:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20438364..20439019 827..172 3280 100 Minus
3L 28110227 3L 20439077..20439232 172..17 780 100 Minus
Blast to na_te.dros performed on 2015-02-13 16:28:57 has no hits.

BO07787.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:13 Download gff for BO07787.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11796-PA 259..1107 17..864 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:50 Download gff for BO07787.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11796-PB 1..849 17..864 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:12:45 Download gff for BO07787.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 357..1205 17..864 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:06:35 Download gff for BO07787.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 357..1205 17..864 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:06:35 Download gff for BO07787.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20438262..20438300 827..864 92 <- Minus
3L 20438365..20439018 173..826 100 <- Minus
3L 20439077..20439232 17..172 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:12:45 Download gff for BO07787.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20431362..20431400 827..864 92 <- Minus
arm_3L 20431465..20432118 173..826 100 <- Minus
arm_3L 20432177..20432332 17..172 100   Minus

BO07787.complete Sequence

916 bp (916 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630929

> BO07787.complete
GAAGTTATCAGTCGACATGCGCCACGGCGACGGTGTCAAGGATGTAGCCT
TCGAAGTGGAGGATTTGAATGCCATTTTCACACTGGCCGTGTCCCGTGGG
GCCGAAGTGGTCCGCGACATCTGGGAGGAGAGCGATGATCAGGGATTCGT
GAGATTCGCTACCATCAAGACGTACGGCGACACTACCCACACTTTCGTGG
AGCGCAATGGGTACGCTGGAGATTTCCTGCCTGGATTCCAGCGGTCGCCC
AAAGATGTCCTTCTAAACGGATTGCCCTCCACCAAGCTGAACTTCATTGA
TCACGTGGTGGGCAACCAGCCGGATCTGCAGATGGAGAGCGTGGCCTCCT
GGTACGAGAGAATCCTGCAGTTCCACCGCTTCTGGTCCGTGGATGACTCG
CAGATTCACACGGAATACTCCGCCCTGCGGTCCATCGTGATGGCAAACTA
CGAGGAGACGGTGAAGATGCCGATCAATGAGCCAGCCAATGGGAAAAAGA
AGTCACAGATCCAGGAGTACGTGGAGTACTACGGCGGCGGTGGTGTCCAG
CACATTGCTCTTAATACGGATGACATTATCGAGGCGGTGAGCAACCTAAA
GGCTCGAGGAACCGAGTTCCTGACCATCCCATCCTCGTACTACGAGATCC
TTCAGGAGCAGCTCTCGCACAGCCGCACCAAGATCAAGGAGGACATGGAG
GTCTTGAAGAAGTTGAACATTTTGATTGACTTCGACGAGAACGGATATCT
GCTGCAGATCTTCACAAAGAACTGCCAGGATAGACCGACCCTCTTCCTGG
AAGTTATCCAACGCTACAATCACAATGGATTTGGCGCTGGCAACTTTAAG
TCCTTGTTCACGGCCATTGAAATTGAACAAGCCAAGCGAGGAAACTTGGC
AAGCTTTCTAGACCAT

BO07787.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-RB 885 CG11796-PB 1..882 17..898 4410 100 Plus
CG11796-RA 1143 CG11796-PA 259..1140 17..898 4410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-RB 1518 CG11796-RB 574..1455 17..898 4410 100 Plus
CG11796-RA 1301 CG11796-RA 357..1238 17..898 4410 100 Plus
CG5872-RB 1866 CG5872-RB 1725..1796 898..827 360 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20438364..20439019 827..172 3280 100 Minus
3L 28110227 3L 20439077..20439232 172..17 780 100 Minus
3L 28110227 3L 20438229..20438300 898..827 360 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:05:14 has no hits.

BO07787.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:13:09 Download gff for BO07787.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RB 1..885 17..901 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:40 Download gff for BO07787.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RB 568..1453 17..902 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:58 Download gff for BO07787.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 357..1238 17..900 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:13:09 Download gff for BO07787.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RB 568..1453 17..902 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:30 Download gff for BO07787.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 357..1238 17..900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:30 Download gff for BO07787.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20438226..20438300 827..900 97 <- Minus
3L 20438365..20439018 173..826 100 <- Minus
3L 20439077..20439232 17..172 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:58 Download gff for BO07787.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20432177..20432332 17..172 100   Minus
arm_3L 20431326..20431400 827..900 97 <- Minus
arm_3L 20431465..20432118 173..826 100 <- Minus

BO07787.pep Sequence

Translation from 16 to 916

> BO07787.pep
MRHGDGVKDVAFEVEDLNAIFTLAVSRGAEVVRDIWEESDDQGFVRFATI
KTYGDTTHTFVERNGYAGDFLPGFQRSPKDVLLNGLPSTKLNFIDHVVGN
QPDLQMESVASWYERILQFHRFWSVDDSQIHTEYSALRSIVMANYEETVK
MPINEPANGKKKSQIQEYVEYYGGGGVQHIALNTDDIIEAVSNLKARGTE
FLTIPSSYYEILQEQLSHSRTKIKEDMEVLKKLNILIDFDENGYLLQIFT
KNCQDRPTLFLEVIQRYNHNGFGAGNFKSLFTAIEIEQAKRGNLASFLDH

BO07787.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-PB 294 CG11796-PB 1..294 1..294 1532 100 Plus
CG11796-PA 380 CG11796-PA 87..380 1..294 1532 100 Plus