Clone Sequence Records
BO07790.3prime Sequence
958 bp (772 high quality bases) assembled on 2006-01-06
> BO07790.3prime
ATGGTCTAGAAAGCTTGCTTTATAAAAATCATAATTAAGTGCGCTCTGGC
ACTCTTCTAAAACATCGGATGGCTGGCTTGCTTGCTTATCCAAATTATTT
TCAAATGTTTCCTGAACTTCTGAACTCTCCACTACTCTATCGTTTTCTTG
ACACTCAGTAATTTGTTGGATTCCCAAGTTATTTGATTGTTTTGCTGTGG
GTCGGGAAGTAGTTGGAGCTGAATCGTGCGCCAGAGATTGACTCATTGTG
GATTGCAGGCATAAGGGACTGCCACATAGTCCGACCACGGAGGCATTCTC
CACATCGGATTCTCCTCCAGAGGTATGGTAAGCTGGCCTAATCCCCAAAC
CGATGGGCACAGCGCGACAATTTGTGCCACTAATTGAAGGTTGAGATCCT
CCCTCCTCATCCTTCACCACATTCCCTTTTACGTCTGTCACAGAAGTGCT
GCTGCTATTCCCGGAAAGAACTGTTGTTTTCGGGGTCTCAGGATCATTCG
CTTTTTGATCCAATCTTAATGGTGCATCGGGCAACACCAAAGTACTTTGA
ATGGGTTTGGTATAGGTCCATCCCGGTGATCCGAATAGTATTTGCACGTT
ATTGTCTAGTCCCAAACGACTTTCTGAACATCTTAGGTCGATACTGGTGG
TGGCCATTTCTGTTTCTTTATACTTCCTGGCTCGAGATAGTCGACGGTTG
GGGATTCGTTTCTTCTTGACAACGCGCTTTGTGTTGGTGCGCATCCGCTT
GCGCATCTTGGTCATCTCAGTTCCAGACAGAGAGTCCTCACTCAAGATCT
TGCTGACCGATTTCCAAGGATCCAAGCGCCCGACAGGTCGCTTTTGACGC
GCATTCTGCGCAACTCGCCGATGTGGTCTACCAGGATTGCCCGGCGGAAG
TGCAATGGGATTGGGCATTCCAACCGGGCCTACACTATGGTGCTAAACAA
TACTTAAA
BO07790.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5538-PA | 1164 | CG5538-RA | 259..1161 | 921..19 | 4465 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:00:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5538-RA | 1328 | CG5538-RA | 306..1245 | 956..19 | 4575 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:00:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12448132..12448963 | 850..19 | 4160 | 100 | Minus |
| 3R | 32079331 | 3R | 12447969..12448066 | 946..850 | 380 | 94.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:00:24 has no hits.
BO07790.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:18 Download gff for
BO07790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5538-PA | 223..1164 | 16..955 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:56 Download gff for
BO07790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5538-PA | 223..1164 | 16..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:08:45 Download gff for
BO07790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5538-RA | 307..1245 | 19..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:54 Download gff for
BO07790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5538-RA | 307..1245 | 19..955 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:54 Download gff for
BO07790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12447959..12448066 | 850..955 | 93 | -> | Minus |
| 3R | 12448133..12448963 | 19..849 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:08:45 Download gff for
BO07790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8273681..8273788 | 850..955 | 93 | -> | Minus |
| arm_3R | 8273855..8274685 | 19..849 | 100 | | Minus |
BO07790.5prime Sequence
850 bp (849 high quality bases) assembled on 2006-01-06
> BO07790.5prime
GAAGTTATCAGTCGACATGGACGAATTTAGAGTACCCAAAAAGGTTAACC
GTAACGTTTTCAAGGCCATTAGCATTCTTCAATCTTCCCGAACCGATTTT
GTCTGCGCTAATGCAATCGTCGACCAGGTAAAGTTCCAAATGCGGAACCG
CATTCCGGTCGAGCATATAGATGAGGCCATAAAACAGTCGCTGGCCAACT
TGACCATGCTGGGCATAGTGCGGCGTCTGGGATCGTCTAAGTATTCGCTT
AGCACCATAGTGTATGGCCGGTTGGGAATGCCCAATCCCATTGCACATCC
GCCGGGCAATCCTGGTAGACCACATCGGCGAGCTGCGCAGAATGCGCGTC
AAAAGCGACCTGTCGGGCGCTTGGATCCTTGGAAATCGGTCAGCAAGATC
TTGAGTGAGGACTCTCTGTCTGGAACTGAGATGACCAAGATGCGCAAGCG
GATGCGCACCAACACAAAGCGCGTTGTCAAGAAGAAACGAATCCCCAACC
GTCGACTATCTCGAGCCAGGAAGTATAAAGAAACAGAAATGGCCACCACC
AGTATCGACCTAAGATGTTCAGAAAGTCGTTTGGGACTAGACAATAACGT
GCAAATACTATTCGGATCACCGGGATGGACCTATACCAAACCCATTCAAA
GTACTTTGGTGTTGCCCGATGCACCATTAAGATTGGATCAAAAAGCGAAT
GATCCTGAGACCCCGAAAACAACAGTTCTTTCCGGGAATAGCAGCAGCAC
TTCTGTGACAGACGTAAAAGGGAATGTGGTGAAGGATGAGGAGGGAGGAT
CTCAACCTTCAATTAGTGGCACAAATTGTCGCGCTGTGCCCATCGGTTTG
BO07790.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5538-PA | 1164 | CG5538-RA | 1..834 | 17..850 | 4170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:02:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5538-RA | 1328 | CG5538-RA | 85..918 | 17..850 | 4170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:02:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12448132..12448636 | 346..850 | 2525 | 100 | Plus |
| 3R | 32079331 | 3R | 12447737..12448066 | 17..346 | 1650 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:02:38 has no hits.
BO07790.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:19 Download gff for
BO07790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5538-PA | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:57 Download gff for
BO07790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5538-PA | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:46:34 Download gff for
BO07790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5538-RA | 78..918 | 8..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:52:31 Download gff for
BO07790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5538-RA | 78..918 | 8..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:52:31 Download gff for
BO07790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12447730..12448066 | 8..346 | 98 | -> | Plus |
| 3R | 12448133..12448636 | 347..850 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:46:34 Download gff for
BO07790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8273452..8273788 | 8..346 | 98 | -> | Plus |
| arm_3R | 8273855..8274358 | 347..850 | 100 | | Plus |
BO07790.complete Sequence
1195 bp (1195 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630930
> BO07790.complete
GAAGTTATCAGTCGACATGGACGAATTTAGAGTACCCAAAAAGGTTAACC
GTAACGTTTTCAAGGCCATTAGCATTCTTCAATCTTCCCGAACCGATTTT
GTCTGCGCTAATGCAATCGTCGACCAGGTAAAGTTCCAAATGCGGAACCG
CATTCCGGTCGAGCATATAGATGAGGCCATAAAACAGTCGCTGGCCAACT
TGACCATGCTGGGCATAGTGCGGCGTCTGGGATCGTCTAAGTATTCGCTT
AGCACCATAGTGTATGGCCGGTTGGGAATGCCCAATCCCATTGCACATCC
GCCGGGCAATCCTGGTAGACCACATCGGCGAGCTGCGCAGAATGCGCGTC
AAAAGCGACCTGTCGGGCGCTTGGATCCTTGGAAATCGGTCAGCAAGATC
TTGAGTGAGGACTCTCTGTCTGGAACTGAGATGACCAAGATGCGCAAGCG
GATGCGCACCAACACAAAGCGCGTTGTCAAGAAGAAACGAATCCCCAACC
GTCGACTATCTCGAGCCAGGAAGTATAAAGAAACAGAAATGGCCACCACC
AGTATCGACCTAAGATGTTCAGAAAGTCGTTTGGGACTAGACAATAACGT
GCAAATACTATTCGGATCACCGGGATGGACCTATACCAAACCCATTCAAA
GTACTTTGGTGTTGCCCGATGCACCATTAAGATTGGATCAAAAAGCGAAT
GATCCTGAGACCCCGAAAACAACAGTTCTTTCCGGGAATAGCAGCAGCAC
TTCTGTGACAGACGTAAAAGGGAATGTGGTGAAGGATGAGGAGGGAGGAT
CTCAACCTTCAATTAGTGGCACAAATTGTCGCGCTGTGCCCATCGGTTTG
GGGATTAGGCCAGCTTACCATACCTCTGGAGGAGAATCCGATGTGGAGAA
TGCCTCCGTGGTCGGACTATGTGGCAGTCCCTTATGCCTGCAATCCACAA
TGAGTCAATCTCTGGCGCACGATTCAGCTCCAACTACTTCCCGACCCACA
GCAAAACAATCAAATAACTTGGGAATCCAACAAATTACTGAGTGTCAAGA
AAACGATAGAGTAGTGGAGAGTTCAGAAGTTCAGGAAACATTTGAAAATA
ATTTGGATAAGCAAGCAAGCCAGCCATCCGATGTTTTAGAAGAGTGCCAG
AGCGCACTTAATTATGATTTTTATAAAGCAAGCTTTCTAGACCAT
BO07790.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:23:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5538-RA | 1164 | CG5538-PA | 1..1161 | 17..1177 | 5805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:23:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5538-RA | 1328 | CG5538-RA | 85..1245 | 17..1177 | 5805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:23:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12448132..12448963 | 346..1177 | 4160 | 100 | Plus |
| 3R | 32079331 | 3R | 12447737..12448066 | 17..346 | 1650 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:23:26 has no hits.
BO07790.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:42 Download gff for
BO07790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5538-RA | 1..1164 | 17..1180 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:18 Download gff for
BO07790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5538-RA | 78..1245 | 8..1177 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:59:48 Download gff for
BO07790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5538-RA | 85..1245 | 17..1179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:42 Download gff for
BO07790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5538-RA | 78..1245 | 8..1177 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:55 Download gff for
BO07790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5538-RA | 85..1245 | 17..1179 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:55 Download gff for
BO07790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12447737..12448066 | 17..346 | 100 | -> | Plus |
| 3R | 12448133..12448963 | 347..1179 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:59:48 Download gff for
BO07790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8273459..8273788 | 17..346 | 100 | -> | Plus |
| arm_3R | 8273855..8274685 | 347..1179 | 99 | | Plus |
BO07790.pep Sequence
Translation from 16 to 1195
> BO07790.pep
MDEFRVPKKVNRNVFKAISILQSSRTDFVCANAIVDQVKFQMRNRIPVEH
IDEAIKQSLANLTMLGIVRRLGSSKYSLSTIVYGRLGMPNPIAHPPGNPG
RPHRRAAQNARQKRPVGRLDPWKSVSKILSEDSLSGTEMTKMRKRMRTNT
KRVVKKKRIPNRRLSRARKYKETEMATTSIDLRCSESRLGLDNNVQILFG
SPGWTYTKPIQSTLVLPDAPLRLDQKANDPETPKTTVLSGNSSSTSVTDV
KGNVVKDEEGGSQPSISGTNCRAVPIGLGIRPAYHTSGGESDVENASVVG
LCGSPLCLQSTMSQSLAHDSAPTTSRPTAKQSNNLGIQQITECQENDRVV
ESSEVQETFENNLDKQASQPSDVLEECQSALNYDFYKASFLDH
BO07790.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5538-PA | 387 | CG5538-PA | 1..387 | 1..387 | 1985 | 100 | Plus |
