Clone Sequence Records
BO07791.3prime Sequence
901 bp (871 high quality bases) assembled on 2006-01-06
> BO07791.3prime
ATGGTCTAGAAAGCTTGCGGGCTTCTTGCGATTGCCCAGCCGCTTGGTCG
GTGAGGCGCTTTTTGGTGGGGCGCTTCCCCTTTTCGCTATAATGGAGCTA
TTTTTTCCCGGGGAACTTTTCGGTCGTCCTGCTCCACCTCCAGGCTTCGC
TGGCGATTTCTTCACCTCGCGGTCTGCTGCGGTGATTGTTTTTACTAGAC
TACCGCCCACAGATTGCGATCGGCGCCGGACAACTTGGACACTTCGTCTG
CTATTGGTTAAGCTGCTGTTCCGGAGGGGCAACGATCGCGGTGTGCTGGG
GGCACTGAGCAGCTGCGGTTCCGAGTCCTTTGATGGTTTTGGACTAAACA
GCCTCTTGCGAGCGGAAGAAGGCCCCGCAATTTGGCACTTGTCTTCCATC
GTCGGAAAGTCTTCTATGTCCTCTGAAAAGGAGGGTAACGTAGGCGAGGG
GGAAAAACGCTGCAGGTCTCCCGTACTGGTGCTTTGCGATATCAGACTGT
CAGGATTTTCGGTGGCCGAGGAAACATCAATTTCGGCACACAGTTCCTCT
ATGAGCTGACGCTGCTGATGATCAAACTCGGCCTGCATGCGACGACGTTC
CTTCTCCTGGTGAATGACCAATTGATTCATTCGCTCCCGATGGCCACGCA
GATAGTTGCGCACTCCTGCCTTGCGGCTGGCTTCCAAAGCGCCATGCTCG
TCCAGCGCCCGTTCTATTATACGCTCCACCTCGCGATCCCGCCTAGAACA
GCTGCTGCCGGCGGTTGTGGTTTTAGTGGCGATGGTGCTCTTGGTTGCGG
CGCTACTGTTGCTATTGTAGCTGTTGTGGCTAATTTTGCTGCTAATACTC
CTTGCACTACGGTTCACCCGCTTGGCCTGAGACTCGATGGTCTGCTTCTC
G
BO07791.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14617-PA | 1650 | CG14617-RA | 765..1647 | 901..19 | 4415 | 100 | Minus |
CG14617-PC | 1650 | CG14617-RC | 765..1647 | 901..19 | 4415 | 100 | Minus |
CG14617-PE | 1650 | CG14617-RE | 765..1647 | 901..19 | 4415 | 100 | Minus |
CG14617-PB | 2001 | CG14617-RB | 765..1635 | 901..31 | 4355 | 100 | Minus |
CG14617-PD | 2001 | CG14617-RD | 765..1635 | 901..31 | 4355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:01:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cp110-RG | 2650 | CG14617-RG | 1217..2099 | 901..19 | 4415 | 100 | Minus |
Cp110-RF | 2292 | CG14617-RF | 912..1794 | 901..19 | 4415 | 100 | Minus |
Cp110-RE | 2919 | CG14617-RE | 1107..1989 | 901..19 | 4415 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:01:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22483656..22484526 | 901..31 | 4355 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 16:01:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2758..2849 | 837..749 | 136 | 66.7 | Minus |
BO07791.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:19 Download gff for
BO07791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14617-PE | 765..1650 | 18..901 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:15:59 Download gff for
BO07791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14617-PE | 765..1650 | 18..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:08:48 Download gff for
BO07791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cp110-RE | 1107..1988 | 20..901 | 100 | <- | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:33:10 Download gff for
BO07791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cp110-RE | 1107..1988 | 20..901 | 100 | <- | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:10 Download gff for
BO07791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22483656..22484526 | 31..901 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:08:48 Download gff for
BO07791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21885492..21886362 | 31..901 | 100 | -> | Minus |
BO07791.5prime Sequence
903 bp (802 high quality bases) assembled on 2006-01-06
> BO07791.5prime
GAAGTTATCAGTCGACATGGATGCGACGTGGGCAATGGAGCAGCTGCTGT
CTGCAGTTGAGATGGGAGGTAGCCACAGCGAGGCCACCACACCAACGGCC
ACGACCACCATATCGATCTGGAGCGCCCCCTCCGAGGGCAGTGGCTCTAG
TTCCATGGACCCTGTCTCCTTTCGGTTCCACTTGGACGGGCAGCCTATAC
TGCCACCGCTGATGACGAGCGCCAAGAAGCGCGAGGTGCAGCTGGCCCGC
CAGATGGCAGAAGCGCTGGAGAAGCGGTACCGCCTGGCCAGACACTCGGC
GGGATCCGACATGGCCAGTAGGAGAAGTGTGTCACAGCTGCAGCAGACAG
AAACGTTAATCTATGACAGCACACGGGGCCAGGCTCGTCCTCAGACTCTG
GTCTTTGGCAAACAGTTGCCCACCATACAGGTGGATCCTCCCACGCCTCA
ACCATTTGTGAAATCAATAGAAAACACTTCCCCAAGGCGGCATAATCGCA
TTACCGATCGTATCCTGCAGTTCGAGCAGTCGGGACTGGGTAAGCTGCTG
CCCAAAGTTCCAGATAAGTGTATCCTGCGCACAAGTCCTGCGGTAGCCGA
AGACCAGCAGGATCAGGATACAAAGGACACAACGGCAAGGGAGCTCGGCA
GTCCACTGGCAGAACCAGCTAATTTTCAGCGTTCGAGAAGTTTCACACTA
GAGGAGCCCTCCCAGGTTCTCGTGGAGCACATGGAGAGGGAGGCCCTGGC
TGTGAAACCCAGCCAGAGTTTGGCCAACTTCGAGAAGCAGACCATCGAGT
CTCANGGCCAGCGGGTGAACCGTAGTGCAAGGAGTATTAGCAGCAAAATT
AGCCACAACAGCTACAATAGCAACAGTAGCGCCGCAACCAGAGCACCATC
GCC
BO07791.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14617-PA | 1650 | CG14617-RA | 1..874 | 17..890 | 4301 | 99.6 | Plus |
CG14617-PB | 2001 | CG14617-RB | 1..874 | 17..890 | 4301 | 99.6 | Plus |
CG14617-PC | 1650 | CG14617-RC | 1..874 | 17..890 | 4301 | 99.6 | Plus |
CG14617-PD | 2001 | CG14617-RD | 1..874 | 17..890 | 4301 | 99.6 | Plus |
CG14617-PE | 1650 | CG14617-RE | 1..874 | 17..890 | 4301 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:44:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cp110-RH | 2320 | CG14617-RH | 274..1161 | 17..903 | 4370 | 99.7 | Plus |
Cp110-RG | 2650 | CG14617-RG | 453..1340 | 17..903 | 4370 | 99.7 | Plus |
Cp110-RE | 2919 | CG14617-RE | 343..1230 | 17..903 | 4370 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:44:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22483086..22483779 | 211..903 | 3379 | 99.4 | Plus |
X | 23542271 | X | 22482841..22483026 | 30..215 | 915 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:44:35 has no hits.
BO07791.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:20 Download gff for
BO07791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14617-PC | 1..888 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:00 Download gff for
BO07791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14617-PE | 1..888 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:10:42 Download gff for
BO07791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cp110-RE | 338..1230 | 9..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:21:25 Download gff for
BO07791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cp110-RE | 338..1230 | 9..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:21:25 Download gff for
BO07791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22482842..22483022 | 31..211 | 100 | -> | Plus |
X | 22483087..22483779 | 212..903 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:10:42 Download gff for
BO07791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21884678..21884858 | 31..211 | 100 | -> | Plus |
arm_X | 21884923..21885615 | 212..903 | 99 | | Plus |
BO07791.complete Sequence
1681 bp (1681 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630931
> BO07791.complete
GAAGTTATCAGTCGACATGGATGCGACGTGGGCAATGGAGCAGCTGCTGT
CTGCAGTTGAGATGGGAGGTAGCCACAGCGAGGCCACCACACCAACGGCC
ACGACCACCATATCGATCTGGAGCGCCCCCTCCGAGGGCAGTGGCTCTAG
TTCCATGGACCCTGTCTCCTTTCGGTTCCACTTGGACGGGCAGCCTATAC
TGCCACCGCTGATGACGAGCGCCAAGAAGCGCGAGGTGCAGCTGGCCCGC
CAGATGGCAGAAGCGCTGGAGAAGCGGTACCGCCTGGCCAGACACTCGGC
GGGATCCGACATGGCCAGTAGGAGAAGTGTGTCACAGCTGCAGCAGACAG
AAACGTTAATCTATGACAGCACACGGGGCCAGGCTCGTCCTCAGACTCTG
GTCTTTGGCAAACAGTTGCCCACCATACAGGTGGATCCTCCCACGCCTCA
ACCATTTGTGAAATCAATAGAAAACACTTCCCCAAGGCGGCATAATCGCA
TTACCGATCGTATCCTGCAGTTCGAGCAGTCGGGACTGGGTAAGCTGCTG
CCCAAAGTTCCAGATAAGTGTATCCTGCGCACAAGTCCTGCGGTAGCCGA
AGACCAGCAGGATCAGGATACAAAGGACACAACGGCAAGGGAGCTCGGCA
GTCCACTGGCAGAACCAGCTAATTTTCAGCGTTCGAGAAGTTTCACACTA
GAGGAGCCCTCCCAGGTTCTCGTGGAGCACATGGAGAGGGAGGCCCTGGC
TGTGAAACCCAGCCAGAGTTTGGCCAACTTCGAGAAGCAGACCATCGAGT
CTCAGGCCAAGCGGGTGAACCGTAGTGCAAGGAGTATTAGCAGCAAAATT
AGCCACAACAGCTACAATAGCAACAGTAGCGCCGCAACCAAGAGCACCAT
CGCCACTAAAACCACAACCGCCGGCAGCAGCTGTTCTAGGCGGGATCGCG
AGGTGGAGCGTATAATAGAACGGGCGCTGGACGAGCATGGCGCTTTGGAA
GCCAGCCGCAAGGCAGGAGTGCGCAACTATCTGCGTGGCCATCGGGAGCG
AATGAATCAATTGGTCATTCACCAGGAGAAGGAACGTCGTCGCATGCAGG
CCGAGTTTGATCATCAGCAGCGTCAGCTCATAGAGGAACTGTGTGCCGAA
ATTGATGTTTCCTCGGCCACCGAAAATCCTGACAGTCTGATATCGCAAAG
CACCAGTACGGGAGACCTGCAGCGTTTTTCCCCCTCGCCTACGTTACCCT
CCTTTTCAGAGGACATAGAAGACTTTCCGACGATGGAAGACAAGTGCCAA
ATTGCGGGGCCTTCTTCCGCTCGCAAGAGGCTGTTTAGTCCAAAACCATC
AAAGGACTCGGAACCGCAGCTGCTCAGTGCCCCCAGCACACCGCGATCGT
TGCCCCTCCGGAACAGCAGCTTAACCAATAGCAGACGAAGTGTCCAAGTT
GTCCGGCGCCGATCGCAATCTGTGGGCGGTAGTCTAGTAAAAACAATCAC
CGCAGCAGACCGCGAGGTGAAGAAATCGCCAGCGAAGCCTGGAGGTGGAG
CAGGACGACCGAAAAGTTCCCCGGGAAAAAATAGCTCCATTATAGCGAAA
AGGGGAAGCGCCCCACCAAAAAGCGCCTCACCGACCAAGCGGCTGGGCAA
TCGCAAGAAGCCCGCAAGCTTTCTAGACCAT
BO07791.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:20:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cp110-RG | 1650 | CG14617-PG | 1..1647 | 17..1663 | 8235 | 100 | Plus |
Cp110-RE | 1650 | CG14617-PE | 1..1647 | 17..1663 | 8235 | 100 | Plus |
Cp110-RC | 1650 | CG14617-PC | 1..1647 | 17..1663 | 8235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:20:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cp110-RG | 2650 | CG14617-RG | 453..2099 | 17..1663 | 8235 | 100 | Plus |
Cp110-RE | 2919 | CG14617-RE | 343..1989 | 17..1663 | 8235 | 100 | Plus |
Cp110-RC | 2487 | CG14617-RC | 343..1989 | 17..1663 | 8235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:20:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22483086..22484526 | 211..1651 | 7205 | 100 | Plus |
X | 23542271 | X | 22482841..22483026 | 30..215 | 915 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:20:33 has no hits.
BO07791.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:16 Download gff for
BO07791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14617-RE | 1..1650 | 17..1664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:21:02 Download gff for
BO07791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14617-RE | 321..1971 | 9..1662 | 99 | <- | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:40 Download gff for
BO07791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cp110-RC | 343..1989 | 17..1665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:16 Download gff for
BO07791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14617-RE | 321..1971 | 9..1662 | 99 | <- | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:19 Download gff for
BO07791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cp110-RC | 343..1989 | 17..1665 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:19 Download gff for
BO07791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22482842..22483022 | 31..211 | 100 | -> | Plus |
X | 22483087..22484526 | 212..1651 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:40 Download gff for
BO07791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21884678..21884858 | 31..211 | 100 | -> | Plus |
arm_X | 21884923..21886362 | 212..1651 | 100 | -> | Plus |
BO07791.pep Sequence
Translation from 16 to 1681
> BO07791.pep
MDATWAMEQLLSAVEMGGSHSEATTPTATTTISIWSAPSEGSGSSSMDPV
SFRFHLDGQPILPPLMTSAKKREVQLARQMAEALEKRYRLARHSAGSDMA
SRRSVSQLQQTETLIYDSTRGQARPQTLVFGKQLPTIQVDPPTPQPFVKS
IENTSPRRHNRITDRILQFEQSGLGKLLPKVPDKCILRTSPAVAEDQQDQ
DTKDTTARELGSPLAEPANFQRSRSFTLEEPSQVLVEHMEREALAVKPSQ
SLANFEKQTIESQAKRVNRSARSISSKISHNSYNSNSSAATKSTIATKTT
TAGSSCSRRDREVERIIERALDEHGALEASRKAGVRNYLRGHRERMNQLV
IHQEKERRRMQAEFDHQQRQLIEELCAEIDVSSATENPDSLISQSTSTGD
LQRFSPSPTLPSFSEDIEDFPTMEDKCQIAGPSSARKRLFSPKPSKDSEP
QLLSAPSTPRSLPLRNSSLTNSRRSVQVVRRRSQSVGGSLVKTITAADRE
VKKSPAKPGGGAGRPKSSPGKNSSIIAKRGSAPPKSASPTKRLGNRKKPA
SFLDH
BO07791.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:36:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cp110-PG | 549 | CG14617-PG | 1..549 | 1..549 | 2760 | 100 | Plus |
Cp110-PE | 549 | CG14617-PE | 1..549 | 1..549 | 2760 | 100 | Plus |
Cp110-PC | 549 | CG14617-PC | 1..549 | 1..549 | 2760 | 100 | Plus |
Cp110-PA | 549 | CG14617-PA | 1..549 | 1..549 | 2760 | 100 | Plus |
Cp110-PH | 666 | CG14617-PH | 1..546 | 1..546 | 2740 | 99.8 | Plus |