Clone BO07792 Report

Search the DGRC for BO07792

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:77
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCyt-b5-r-RA
Protein status:BO07792.pep: validated full length
Sequenced Size:1342

Clone Sequence Records

BO07792.3prime Sequence

899 bp (811 high quality bases) assembled on 2006-01-06

> BO07792.3prime
ATGGTCTAGAAAGCTTGCCTTTCCCGCCCCAGGAGCCCTGGGATTGGGCT
CGATGCGCAATAGTTGCTTGTGCTGGCCAATCATGTGCTCGATGTGGTTG
CACTCGCGGAGATGACCCTTGAACTCATCGAGAGTCTGGTAAAGCACCGG
ATAGAGGGCGGGCAGGAGGCCATGATCCAGGGTCGGGAAGAGATGGTGGA
GCACATGGTCACCAAAGTGGGTGAGCACCAGGAACTGCGACCACTTGAGA
TCACCGCGGTCGATAATCGTGTCCACCTGGAAGAGACCCCAGTCACGATC
CTCACGATTGGCATCACCCTCGTGATAGATTTCCGGATCGTGATGCGCCG
CATTCAGACCAATCAAGCAGAAGCTAAAGCTGGCTATCGACGTCATCGCG
AGCCACTGGCGCACGCAGATCCAAATGCCTAAAGATCCCCCGGTTCCCAG
GTATATGGCAATGGGTATAGTCAGTGGCAGTAGGTCGTGCCAGTAGAGGA
TGTTGGTGTGGCGCAGCGAATAGAAAATACGAGTGCCCATTTGTATGAAG
AAGGCGAGGGCATAGGCCACCGGCTCCGTGACCCAGGACACATAACGCAT
CAACTTGCTCTTGATGTGCGGATTGGGCACCCAGCACAGCAAGGGTTCGA
ACATCGAGAGTTCCAGATCGAAATACGAATTCGGATAGATGTGGTGGGAC
AGAGCATGGGACACACGCCAGGCGGCAAAGTTCATCATGCCCAGATTAAA
GGCGTACATCTGCCAGTTGTCCCGACGATGAAAGTAGTTGTGGGACACGA
TCACCGTCCAGCAGAGGGCCACACTCGCCAAGACCAAAGCCAAAAGGCTG
TTGTATTTGGCACTGGCAATGCCCAACAGGTAGAGCGACACAACGAGAC

BO07792.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG13279-PA 1311 Cyt-b5-r-RA 428..1308 899..19 4405 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:31:15
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-b5-r-RB 1557 CG13279-RB 517..1397 899..19 4405 100 Minus
Cyt-b5-r-RA 1465 CG13279-RA 517..1397 899..19 4405 100 Minus
CG17928-RB 1595 CG17928-RB 1103..1314 381..170 295 77.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16788934..16789445 19..530 2560 100 Plus
2L 23513712 2L 16789517..16789886 530..899 1850 100 Plus
2L 23513712 2L 16793042..16793163 291..170 265 81.1 Minus
Blast to na_te.dros performed on 2015-02-04 20:31:13 has no hits.

BO07792.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:21 Download gff for BO07792.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13279-PA 428..1311 18..899 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:02 Download gff for BO07792.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13279-PA 428..1311 18..899 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:26:21 Download gff for BO07792.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-r-RA 517..1405 11..899 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:50:35 Download gff for BO07792.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-r-RA 517..1405 11..899 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:50:35 Download gff for BO07792.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16788926..16789444 11..529 99 <- Plus
2L 16789517..16789886 530..899 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:26:21 Download gff for BO07792.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16789517..16789886 530..899 100   Plus
arm_2L 16788926..16789444 11..529 99 <- Plus

BO07792.5prime Sequence

930 bp (755 high quality bases) assembled on 2006-01-06

> BO07792.5prime
GAAGTTATCAGTCGACATGGTAATCGAGGAGTGGAAAAAGAGTGGCATTG
CCACCAAGTTTCCAACATACCGAAATTCGGCCCTAATCACCACACACAGC
TGGCAAAAGGGTAAACGGCAGGACGATGGAGCCGAAGGACTGTGGCGCAT
CAACGATGGCATCTATGACTTCACCTCGTTCATTGACAAGCATCCTGGCG
GTCCCTTCTGGATTCGTGAGACCAAGGGCACCGACATCACCGAAGCCTTT
GAGGCACATCATCTGACCACGGCTCCCGAAAAGATGATCGCCAAATACAA
GGTGAGGGATGCGGCTGAACCCAGAATCTACACACTGACCTTGGAGGAGG
GCGGATTCTACAAGACGCTAAAGGAGCGAGTCCGCGAGCAACTAAAGACC
ATAGACAAGCGGCCGAAAAAGAAGAGTGATCTCATTCACCTGGGTCTCGT
TGTGTCGCTCTACCTGTTGGGCATTGCCAGTGCCAAATACAACAGCCTTT
TGGCTTTGGTCTTGGCGAGTGTGGCCCTCTGCTGGACGGTGATCGTGTCC
CACAACTACTTTCATCGTCGGGACAACTGGCAGATGTACGCCTTTAATCT
GGGCATGATGAACTTTGCCGCCTGGCGTGTGTCCCATGCTCTGTCCCACC
ACATCTATCCGAATTCGTATTTCGATCTGGAACTCTCGATGTTCGAACCC
TTGCTGTGCTGGGTGCCCAATCCGCACATCAAGAGCAAGTTGATGCGTTA
TGTGTCCTGGGTCACGGAGCCGGTGGCCTATGCCCTCGCCTTCTTCATAC
AAATGGGCACTCGTATTTTCTATTCGCTGCGCCACACCAACATCCTCTAC
TGGCACGACCTACTGGCACTGACTATACCCCATGCCATATACCTGGGAAC
CGGGGGATCTTTAGGCATTTGGATCTGCGT

BO07792.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG13279-PA 1311 Cyt-b5-r-RA 1..914 17..930 4495 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-b5-r-RB 1557 CG13279-RB 90..1003 17..930 4525 99.7 Plus
Cyt-b5-r-RA 1465 CG13279-RA 90..1003 17..930 4525 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16790219..16790632 430..17 2070 100 Minus
2L 23513712 2L 16789517..16789899 813..431 1915 100 Minus
2L 23513712 2L 16789328..16789445 930..813 545 97.5 Minus
Blast to na_te.dros performed on 2015-02-13 01:58:11 has no hits.

BO07792.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:22 Download gff for BO07792.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13279-PA 1..914 17..930 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:03 Download gff for BO07792.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13279-PA 1..914 17..930 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:33:42 Download gff for BO07792.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-r-RA 82..1003 8..930 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:34:10 Download gff for BO07792.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-r-RA 82..1003 8..930 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:34:10 Download gff for BO07792.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16789328..16789444 814..930 97 <- Minus
2L 16789517..16789899 431..813 100 <- Minus
2L 16790219..16790640 8..430 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:33:42 Download gff for BO07792.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16789328..16789444 814..930 97 <- Minus
arm_2L 16789517..16789899 431..813 100 <- Minus
arm_2L 16790219..16790640 8..430 99   Minus

BO07792.complete Sequence

1342 bp (1342 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630932

> BO07792.complete
GAAGTTATCAGTCGACATGGTAATCGAGGAGTGGAAAAAGAGTGGCATTG
CCACCAAGTTTCCAACATACCGAAATTCGGCCCTAATCACCACACACAGC
TGGCAAAAGGGTAAACGGCAGGACGATGGAGCCGAAGGACTGTGGCGCAT
CAACGATGGCATCTATGACTTCACCTCGTTCATTGACAAGCATCCTGGCG
GTCCCTTCTGGATTCGTGAGACCAAGGGCACCGACATCACCGAAGCCTTT
GAGGCACATCATCTGACCACGGCTCCCGAAAAGATGATCGCCAAATACAA
GGTGAGGGATGCGGCTGAACCCAGAATCTACACACTGACCTTGGAGGAGG
GCGGATTCTACAAGACGCTAAAGGAGCGAGTCCGCGAGCAACTAAAGACC
ATAGACAAGCGGCCGAAAAAGAAGAGTGATCTCATTCACCTGGGTCTCGT
TGTGTCGCTCTACCTGTTGGGCATTGCCAGTGCCAAATACAACAGCCTTT
TGGCTTTGGTCTTGGCGAGTGTGGCCCTCTGCTGGACGGTGATCGTGTCC
CACAACTACTTTCATCGTCGGGACAACTGGCAGATGTACGCCTTTAATCT
GGGCATGATGAACTTTGCCGCCTGGCGTGTGTCCCATGCTCTGTCCCACC
ACATCTATCCGAATTCGTATTTCGATCTGGAACTCTCGATGTTCGAACCC
TTGCTGTGCTGGGTGCCCAATCCGCACATCAAGAGCAAGTTGATGCGTTA
TGTGTCCTGGGTCACGGAGCCGGTGGCCTATGCCCTCGCCTTCTTCATAC
AAATGGGCACTCGTATTTTCTATTCGCTGCGCCACACCAACATCCTCTAC
TGGCACGACCTACTGCCACTGACTATACCCATTGCCATATACCTGGGAAC
CGGGGGATCTTTAGGCATTTGGATCTGCGTGCGCCAGTGGCTCGCGATGA
CGTCGATAGCCAGCTTTAGCTTCTGCTTGATTGGTCTGAATGCGGCGCAT
CACGATCCGGAAATCTATCACGAGGGTGATGCCAATCGTGAGGATCGTGA
CTGGGGTCTCTTCCAGGTGGACACGATTATCGACCGCGGTGATCTCAAGT
GGTCGCAGTTCCTGGTGCTCACCCACTTTGGTGACCATGTGCTCCACCAT
CTCTTCCCGACCCTGGATCATGGCCTCCTGCCCGCCCTCTATCCGGTGCT
TTACCAGACTCTCGATGAGTTCAAGGGTCATCTCCGCGAGTGCAACCACA
TCGAGCACATGATTGGCCAGCACAAGCAACTATTGCGCATCGAGCCCAAT
CCCAGGGCTCCTGGGGCGGGAAAGGCAAGCTTTCTAGACCAT

BO07792.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-b5-r-RB 1311 CG13279-PB 1..1308 17..1324 6540 100 Plus
Cyt-b5-r-RA 1311 CG13279-PA 1..1308 17..1324 6540 100 Plus
CG17928-RB 1326 CG17928-PB 1045..1166 1052..1173 265 81.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-b5-r-RB 1557 CG13279-RB 90..1397 17..1324 6540 100 Plus
Cyt-b5-r-RA 1465 CG13279-RA 90..1397 17..1324 6540 100 Plus
CG17928-RB 1595 CG17928-RB 1193..1314 1052..1173 265 81.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16788934..16789445 1324..813 2560 100 Minus
2L 23513712 2L 16790219..16790632 430..17 2070 100 Minus
2L 23513712 2L 16789517..16789899 813..431 1915 100 Minus
2L 23513712 2L 16793042..16793163 1052..1173 265 81.1 Plus
Blast to na_te.dros performed on 2014-11-28 00:23:31 has no hits.

BO07792.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:43 Download gff for BO07792.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-r-RA 1..1311 17..1325 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:20 Download gff for BO07792.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-r-RA 79..1402 8..1332 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:42 Download gff for BO07792.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-r-RA 90..1397 17..1326 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:43 Download gff for BO07792.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-r-RA 79..1402 8..1332 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:01 Download gff for BO07792.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-r-RA 90..1397 17..1326 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:01 Download gff for BO07792.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16789517..16789899 431..813 100 <- Minus
2L 16788932..16789444 814..1326 99 <- Minus
2L 16790219..16790632 17..430 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:42 Download gff for BO07792.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16789517..16789899 431..813 100 <- Minus
arm_2L 16788932..16789444 814..1326 99 <- Minus
arm_2L 16790219..16790632 17..430 100   Minus

BO07792.pep Sequence

Translation from 16 to 1342

> BO07792.pep
MVIEEWKKSGIATKFPTYRNSALITTHSWQKGKRQDDGAEGLWRINDGIY
DFTSFIDKHPGGPFWIRETKGTDITEAFEAHHLTTAPEKMIAKYKVRDAA
EPRIYTLTLEEGGFYKTLKERVREQLKTIDKRPKKKSDLIHLGLVVSLYL
LGIASAKYNSLLALVLASVALCWTVIVSHNYFHRRDNWQMYAFNLGMMNF
AAWRVSHALSHHIYPNSYFDLELSMFEPLLCWVPNPHIKSKLMRYVSWVT
EPVAYALAFFIQMGTRIFYSLRHTNILYWHDLLPLTIPIAIYLGTGGSLG
IWICVRQWLAMTSIASFSFCLIGLNAAHHDPEIYHEGDANREDRDWGLFQ
VDTIIDRGDLKWSQFLVLTHFGDHVLHHLFPTLDHGLLPALYPVLYQTLD
EFKGHLRECNHIEHMIGQHKQLLRIEPNPRAPGAGKASFLDH

BO07792.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-b5-r-PB 436 CG13279-PB 1..436 1..436 2368 100 Plus
Cyt-b5-r-PA 436 CG13279-PA 1..436 1..436 2368 100 Plus
CG17928-PB 441 CG17928-PB 10..439 5..436 1303 55.6 Plus
CG17928-PA 441 CG17928-PA 10..439 5..436 1303 55.6 Plus