Clone Sequence Records
BO07792.3prime Sequence
899 bp (811 high quality bases) assembled on 2006-01-06
> BO07792.3prime
ATGGTCTAGAAAGCTTGCCTTTCCCGCCCCAGGAGCCCTGGGATTGGGCT
CGATGCGCAATAGTTGCTTGTGCTGGCCAATCATGTGCTCGATGTGGTTG
CACTCGCGGAGATGACCCTTGAACTCATCGAGAGTCTGGTAAAGCACCGG
ATAGAGGGCGGGCAGGAGGCCATGATCCAGGGTCGGGAAGAGATGGTGGA
GCACATGGTCACCAAAGTGGGTGAGCACCAGGAACTGCGACCACTTGAGA
TCACCGCGGTCGATAATCGTGTCCACCTGGAAGAGACCCCAGTCACGATC
CTCACGATTGGCATCACCCTCGTGATAGATTTCCGGATCGTGATGCGCCG
CATTCAGACCAATCAAGCAGAAGCTAAAGCTGGCTATCGACGTCATCGCG
AGCCACTGGCGCACGCAGATCCAAATGCCTAAAGATCCCCCGGTTCCCAG
GTATATGGCAATGGGTATAGTCAGTGGCAGTAGGTCGTGCCAGTAGAGGA
TGTTGGTGTGGCGCAGCGAATAGAAAATACGAGTGCCCATTTGTATGAAG
AAGGCGAGGGCATAGGCCACCGGCTCCGTGACCCAGGACACATAACGCAT
CAACTTGCTCTTGATGTGCGGATTGGGCACCCAGCACAGCAAGGGTTCGA
ACATCGAGAGTTCCAGATCGAAATACGAATTCGGATAGATGTGGTGGGAC
AGAGCATGGGACACACGCCAGGCGGCAAAGTTCATCATGCCCAGATTAAA
GGCGTACATCTGCCAGTTGTCCCGACGATGAAAGTAGTTGTGGGACACGA
TCACCGTCCAGCAGAGGGCCACACTCGCCAAGACCAAAGCCAAAAGGCTG
TTGTATTTGGCACTGGCAATGCCCAACAGGTAGAGCGACACAACGAGAC
BO07792.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13279-PA | 1311 | Cyt-b5-r-RA | 428..1308 | 899..19 | 4405 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:31:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyt-b5-r-RB | 1557 | CG13279-RB | 517..1397 | 899..19 | 4405 | 100 | Minus |
Cyt-b5-r-RA | 1465 | CG13279-RA | 517..1397 | 899..19 | 4405 | 100 | Minus |
CG17928-RB | 1595 | CG17928-RB | 1103..1314 | 381..170 | 295 | 77.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:31:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16788934..16789445 | 19..530 | 2560 | 100 | Plus |
2L | 23513712 | 2L | 16789517..16789886 | 530..899 | 1850 | 100 | Plus |
2L | 23513712 | 2L | 16793042..16793163 | 291..170 | 265 | 81.1 | Minus |
Blast to na_te.dros performed on 2015-02-04 20:31:13 has no hits.
BO07792.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:21 Download gff for
BO07792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13279-PA | 428..1311 | 18..899 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:02 Download gff for
BO07792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13279-PA | 428..1311 | 18..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:26:21 Download gff for
BO07792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-r-RA | 517..1405 | 11..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:50:35 Download gff for
BO07792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-r-RA | 517..1405 | 11..899 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:50:35 Download gff for
BO07792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16788926..16789444 | 11..529 | 99 | <- | Plus |
2L | 16789517..16789886 | 530..899 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:26:21 Download gff for
BO07792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16789517..16789886 | 530..899 | 100 | | Plus |
arm_2L | 16788926..16789444 | 11..529 | 99 | <- | Plus |
BO07792.5prime Sequence
930 bp (755 high quality bases) assembled on 2006-01-06
> BO07792.5prime
GAAGTTATCAGTCGACATGGTAATCGAGGAGTGGAAAAAGAGTGGCATTG
CCACCAAGTTTCCAACATACCGAAATTCGGCCCTAATCACCACACACAGC
TGGCAAAAGGGTAAACGGCAGGACGATGGAGCCGAAGGACTGTGGCGCAT
CAACGATGGCATCTATGACTTCACCTCGTTCATTGACAAGCATCCTGGCG
GTCCCTTCTGGATTCGTGAGACCAAGGGCACCGACATCACCGAAGCCTTT
GAGGCACATCATCTGACCACGGCTCCCGAAAAGATGATCGCCAAATACAA
GGTGAGGGATGCGGCTGAACCCAGAATCTACACACTGACCTTGGAGGAGG
GCGGATTCTACAAGACGCTAAAGGAGCGAGTCCGCGAGCAACTAAAGACC
ATAGACAAGCGGCCGAAAAAGAAGAGTGATCTCATTCACCTGGGTCTCGT
TGTGTCGCTCTACCTGTTGGGCATTGCCAGTGCCAAATACAACAGCCTTT
TGGCTTTGGTCTTGGCGAGTGTGGCCCTCTGCTGGACGGTGATCGTGTCC
CACAACTACTTTCATCGTCGGGACAACTGGCAGATGTACGCCTTTAATCT
GGGCATGATGAACTTTGCCGCCTGGCGTGTGTCCCATGCTCTGTCCCACC
ACATCTATCCGAATTCGTATTTCGATCTGGAACTCTCGATGTTCGAACCC
TTGCTGTGCTGGGTGCCCAATCCGCACATCAAGAGCAAGTTGATGCGTTA
TGTGTCCTGGGTCACGGAGCCGGTGGCCTATGCCCTCGCCTTCTTCATAC
AAATGGGCACTCGTATTTTCTATTCGCTGCGCCACACCAACATCCTCTAC
TGGCACGACCTACTGGCACTGACTATACCCCATGCCATATACCTGGGAAC
CGGGGGATCTTTAGGCATTTGGATCTGCGT
BO07792.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13279-PA | 1311 | Cyt-b5-r-RA | 1..914 | 17..930 | 4495 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:58:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyt-b5-r-RB | 1557 | CG13279-RB | 90..1003 | 17..930 | 4525 | 99.7 | Plus |
Cyt-b5-r-RA | 1465 | CG13279-RA | 90..1003 | 17..930 | 4525 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:58:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16790219..16790632 | 430..17 | 2070 | 100 | Minus |
2L | 23513712 | 2L | 16789517..16789899 | 813..431 | 1915 | 100 | Minus |
2L | 23513712 | 2L | 16789328..16789445 | 930..813 | 545 | 97.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:58:11 has no hits.
BO07792.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:22 Download gff for
BO07792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13279-PA | 1..914 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:03 Download gff for
BO07792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13279-PA | 1..914 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:33:42 Download gff for
BO07792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-r-RA | 82..1003 | 8..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:34:10 Download gff for
BO07792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-r-RA | 82..1003 | 8..930 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:34:10 Download gff for
BO07792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16789328..16789444 | 814..930 | 97 | <- | Minus |
2L | 16789517..16789899 | 431..813 | 100 | <- | Minus |
2L | 16790219..16790640 | 8..430 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:33:42 Download gff for
BO07792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16789328..16789444 | 814..930 | 97 | <- | Minus |
arm_2L | 16789517..16789899 | 431..813 | 100 | <- | Minus |
arm_2L | 16790219..16790640 | 8..430 | 99 | | Minus |
BO07792.complete Sequence
1342 bp (1342 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630932
> BO07792.complete
GAAGTTATCAGTCGACATGGTAATCGAGGAGTGGAAAAAGAGTGGCATTG
CCACCAAGTTTCCAACATACCGAAATTCGGCCCTAATCACCACACACAGC
TGGCAAAAGGGTAAACGGCAGGACGATGGAGCCGAAGGACTGTGGCGCAT
CAACGATGGCATCTATGACTTCACCTCGTTCATTGACAAGCATCCTGGCG
GTCCCTTCTGGATTCGTGAGACCAAGGGCACCGACATCACCGAAGCCTTT
GAGGCACATCATCTGACCACGGCTCCCGAAAAGATGATCGCCAAATACAA
GGTGAGGGATGCGGCTGAACCCAGAATCTACACACTGACCTTGGAGGAGG
GCGGATTCTACAAGACGCTAAAGGAGCGAGTCCGCGAGCAACTAAAGACC
ATAGACAAGCGGCCGAAAAAGAAGAGTGATCTCATTCACCTGGGTCTCGT
TGTGTCGCTCTACCTGTTGGGCATTGCCAGTGCCAAATACAACAGCCTTT
TGGCTTTGGTCTTGGCGAGTGTGGCCCTCTGCTGGACGGTGATCGTGTCC
CACAACTACTTTCATCGTCGGGACAACTGGCAGATGTACGCCTTTAATCT
GGGCATGATGAACTTTGCCGCCTGGCGTGTGTCCCATGCTCTGTCCCACC
ACATCTATCCGAATTCGTATTTCGATCTGGAACTCTCGATGTTCGAACCC
TTGCTGTGCTGGGTGCCCAATCCGCACATCAAGAGCAAGTTGATGCGTTA
TGTGTCCTGGGTCACGGAGCCGGTGGCCTATGCCCTCGCCTTCTTCATAC
AAATGGGCACTCGTATTTTCTATTCGCTGCGCCACACCAACATCCTCTAC
TGGCACGACCTACTGCCACTGACTATACCCATTGCCATATACCTGGGAAC
CGGGGGATCTTTAGGCATTTGGATCTGCGTGCGCCAGTGGCTCGCGATGA
CGTCGATAGCCAGCTTTAGCTTCTGCTTGATTGGTCTGAATGCGGCGCAT
CACGATCCGGAAATCTATCACGAGGGTGATGCCAATCGTGAGGATCGTGA
CTGGGGTCTCTTCCAGGTGGACACGATTATCGACCGCGGTGATCTCAAGT
GGTCGCAGTTCCTGGTGCTCACCCACTTTGGTGACCATGTGCTCCACCAT
CTCTTCCCGACCCTGGATCATGGCCTCCTGCCCGCCCTCTATCCGGTGCT
TTACCAGACTCTCGATGAGTTCAAGGGTCATCTCCGCGAGTGCAACCACA
TCGAGCACATGATTGGCCAGCACAAGCAACTATTGCGCATCGAGCCCAAT
CCCAGGGCTCCTGGGGCGGGAAAGGCAAGCTTTCTAGACCAT
BO07792.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:23:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyt-b5-r-RB | 1311 | CG13279-PB | 1..1308 | 17..1324 | 6540 | 100 | Plus |
Cyt-b5-r-RA | 1311 | CG13279-PA | 1..1308 | 17..1324 | 6540 | 100 | Plus |
CG17928-RB | 1326 | CG17928-PB | 1045..1166 | 1052..1173 | 265 | 81.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:23:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyt-b5-r-RB | 1557 | CG13279-RB | 90..1397 | 17..1324 | 6540 | 100 | Plus |
Cyt-b5-r-RA | 1465 | CG13279-RA | 90..1397 | 17..1324 | 6540 | 100 | Plus |
CG17928-RB | 1595 | CG17928-RB | 1193..1314 | 1052..1173 | 265 | 81.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:23:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16788934..16789445 | 1324..813 | 2560 | 100 | Minus |
2L | 23513712 | 2L | 16790219..16790632 | 430..17 | 2070 | 100 | Minus |
2L | 23513712 | 2L | 16789517..16789899 | 813..431 | 1915 | 100 | Minus |
2L | 23513712 | 2L | 16793042..16793163 | 1052..1173 | 265 | 81.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:23:31 has no hits.
BO07792.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:43 Download gff for
BO07792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-r-RA | 1..1311 | 17..1325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:20 Download gff for
BO07792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-r-RA | 79..1402 | 8..1332 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:42 Download gff for
BO07792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-r-RA | 90..1397 | 17..1326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:43 Download gff for
BO07792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-r-RA | 79..1402 | 8..1332 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:01 Download gff for
BO07792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-r-RA | 90..1397 | 17..1326 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:01 Download gff for
BO07792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16789517..16789899 | 431..813 | 100 | <- | Minus |
2L | 16788932..16789444 | 814..1326 | 99 | <- | Minus |
2L | 16790219..16790632 | 17..430 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:42 Download gff for
BO07792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16789517..16789899 | 431..813 | 100 | <- | Minus |
arm_2L | 16788932..16789444 | 814..1326 | 99 | <- | Minus |
arm_2L | 16790219..16790632 | 17..430 | 100 | | Minus |
BO07792.pep Sequence
Translation from 16 to 1342
> BO07792.pep
MVIEEWKKSGIATKFPTYRNSALITTHSWQKGKRQDDGAEGLWRINDGIY
DFTSFIDKHPGGPFWIRETKGTDITEAFEAHHLTTAPEKMIAKYKVRDAA
EPRIYTLTLEEGGFYKTLKERVREQLKTIDKRPKKKSDLIHLGLVVSLYL
LGIASAKYNSLLALVLASVALCWTVIVSHNYFHRRDNWQMYAFNLGMMNF
AAWRVSHALSHHIYPNSYFDLELSMFEPLLCWVPNPHIKSKLMRYVSWVT
EPVAYALAFFIQMGTRIFYSLRHTNILYWHDLLPLTIPIAIYLGTGGSLG
IWICVRQWLAMTSIASFSFCLIGLNAAHHDPEIYHEGDANREDRDWGLFQ
VDTIIDRGDLKWSQFLVLTHFGDHVLHHLFPTLDHGLLPALYPVLYQTLD
EFKGHLRECNHIEHMIGQHKQLLRIEPNPRAPGAGKASFLDH
BO07792.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyt-b5-r-PB | 436 | CG13279-PB | 1..436 | 1..436 | 2368 | 100 | Plus |
Cyt-b5-r-PA | 436 | CG13279-PA | 1..436 | 1..436 | 2368 | 100 | Plus |
CG17928-PB | 441 | CG17928-PB | 10..439 | 5..436 | 1303 | 55.6 | Plus |
CG17928-PA | 441 | CG17928-PA | 10..439 | 5..436 | 1303 | 55.6 | Plus |