Clone BO07793 Report

Search the DGRC for BO07793

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:77
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptPkg21D-RA
Protein status:BO07793.pep: validated full length
Sequenced Size:2338

Clone Sequence Records

BO07793.3prime Sequence

864 bp (859 high quality bases) assembled on 2006-01-06

> BO07793.3prime
ATGGTCTAGAAAGCTTGCGAAATCCGCATCCCAGCCGGAGAGCTCGTCCG
GTGGCTCGTTCAAATCGCACGGAAAGCGGTCGAAGTAGCGAACATCCGTC
GGATGGGCGATGGGTCTCACGAAGGGCGGAATCAGCAGCTGGCTGGCCAA
GCCGTCCCAGTCGAATCCCAGGAACCACTTATGTTTCTTTATGTCCTGTA
TGCCACCAGTCTGGTAGCCGAGGCGCTCCGATGGAACATCGCGGCACAGT
CGCTTGATGAGCTGCACGGCCCAGCGGGAGATGTGCTTGGGAAAGGCTAT
CATGTCAATGCCCTTCAGGATGAGATTGTACGTCTGCATGGGATCTGGAG
CACTGAACGGTGGCGTTCCGTTGAGCAGTTCATGAATGAGAATGCCCAAA
GCCCAGTAGTCTACGGCTCGATCGTGACCCTTGTTCAGGATGATCTCGGG
TGCCACGTACTCCGGGGTGCCGCAGAAGGTCCACGTCTTAGAGCTCGTTC
CGATCTGCTTGGCAAAGCCGAAGTCCACGATCTTGACGTAGCCGCGCTCA
TCAAGCATCAGGTTCTCCGGCTTAAGGTCTCTATAGATGATCCCGCGGGC
ATGCAAGTATTCAAACGCCTGCAGCACACACCCGATGATGAACTGCGCCG
CGTTGTCCTCGAAGGATCCGCGATCCCGGAGCATCGTCCATATCTCCCCA
CCCATGCAGGCCTCGAGCAGCATATACACGTACTTCTCGTCACGGAAGGT
GCGATACAAACGGCAGATGAAGGGCGATCTCGAACTGAGCATGATATGAC
GTTCACTGAAGATGTGCTCCTCCTGTTTGGTGTCCACAATATGTCGCTTC
TTGAGGCACTTTAG

BO07793.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3324-PA 2307 Pkg21D-RA 1459..2304 864..19 4230 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
Pkg21D-RA 2583 CG3324-RA 1628..2473 864..19 4230 100 Minus
CG3544-RB 4359 CG3544-RB 2315..2815 364..864 2505 100 Plus
CG3544-RB 4359 CG3544-RB 1928..2087 19..178 800 100 Plus
CG3544-RB 4359 CG3544-RB 2091..2247 208..364 785 100 Plus
for-RK 3223 CG10033-RK 2334..2653 741..422 340 74.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 786732..787232 364..864 2505 100 Plus
2L 23513712 2L 786476..786664 176..364 945 100 Plus
2L 23513712 2L 786263..786422 19..178 800 100 Plus
2L 23513712 2L 3623315..3623634 422..741 340 73.8 Plus
Blast to na_te.dros performed on 2015-02-09 19:44:48 has no hits.

BO07793.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:23 Download gff for BO07793.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3324-PA 1459..2307 18..864 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:04 Download gff for BO07793.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3324-PA 1459..2307 18..864 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:10:44 Download gff for BO07793.3prime
Subject Subject Range Query Range Percent Splice Strand
Pkg21D-RA 1628..2478 13..864 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:21:28 Download gff for BO07793.3prime
Subject Subject Range Query Range Percent Splice Strand
Pkg21D-RA 1628..2478 13..864 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:21:28 Download gff for BO07793.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 786258..786422 13..178 98 <- Plus
2L 786479..786664 179..364 100 <- Plus
2L 786733..787232 365..864 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:10:44 Download gff for BO07793.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 786258..786422 13..178 98 <- Plus
arm_2L 786479..786664 179..364 100 <- Plus
arm_2L 786733..787232 365..864 100   Plus

BO07793.5prime Sequence

873 bp (852 high quality bases) assembled on 2006-01-06

> BO07793.5prime
GAAGTTATCAGTCGACATGGCCGCTGGAATGTTGACTGATCGGGAGCGGG
AGGCGATCGTCAGCAATCTGACCAAGGACGTGCAGGCTCTGAGGGAAATG
GTGCGGAGTCGGGAGAGCGAGCTGGTCAAGCTGCACCGCGAAATCCACAA
GCTGAAGAGTGTTCTCCAGCAGACCACCAACAACCTGAACGTCACCCGAA
ATGAGAAGGCCAAAAAGAAGCTCTACTCCTTGCCAGAGCAATGTGGCGAG
CAGGAAAGTAGGAATCAGAATCCACATTTGTGCAGCTCCTGCGGCATGGT
GCTGCCCACCAGTCCGGAGTTTGCCCTGGAGGCGCTTTCTCTGGGACCGC
TGTCCCCATTAGCATCAACATCTTCCGCCTCCCCCTCTGGACGAACTTCT
GCTGATGAAGTGCGACCCAAGGCGATGCCCGCTGCTATCAAGAAACAAGG
TGTCTCCGCCGAGAGCTGTGTGCAGTCCATGCAGCAATCCTACAGCATAC
CGATTCCAAAATACGAAAAGGATTTCAGTGATAAGCAGCAAATCAAAGAC
GCCATTATGGACAATGACTTCCTAAAGAACATAGACGCATCGCAGGTGCG
GGAACTGGTAGATTCAATGTACTCCAAGAGCATAGCAGCCGGCGAGTTTG
TGATCCGCGAGGGTGAAGTGGGCGCACATCTGTACGTCTCCGCCGCCGGC
GAGTTTGCGGTGATGCAGCAGGGCAAGGTGCTGGACAAGATGGGGGCGGG
AAAGGCGTTTGGGGAGCTGGCTATCCTCTACAACTGCACCAGAACGGCCT
CCATTCGAGTCCTAAGTGAGGCCGCGAGGGTATGGGTGCTGGACAGACGG
GTCTTTCAGCAGATTATGATGTG

BO07793.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3324-PA 2307 Pkg21D-RA 1..857 17..873 4285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
Pkg21D-RA 2583 CG3324-RA 170..1026 17..873 4285 100 Plus
CG3544-RB 4359 CG3544-RB 3825..4197 528..156 1865 100 Minus
CG3544-RB 4359 CG3544-RB 3417..3764 873..526 1740 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 788242..788614 528..156 1865 100 Minus
2L 23513712 2L 787834..788181 873..526 1740 100 Minus
2L 23513712 2L 790489..790629 157..17 705 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:36:15 has no hits.

BO07793.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:24 Download gff for BO07793.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3324-PA 1..857 17..873 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:05 Download gff for BO07793.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3324-PA 1..857 17..873 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:05:01 Download gff for BO07793.5prime
Subject Subject Range Query Range Percent Splice Strand
Pkg21D-RA 168..1026 14..873 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:50:19 Download gff for BO07793.5prime
Subject Subject Range Query Range Percent Splice Strand
Pkg21D-RA 168..1026 14..873 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:50:19 Download gff for BO07793.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 790489..790631 14..157 99   Minus
2L 787834..788178 529..873 100 <- Minus
2L 788242..788612 158..528 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:05:01 Download gff for BO07793.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 787834..788178 529..873 100 <- Minus
arm_2L 788242..788612 158..528 100 <- Minus
arm_2L 790489..790631 14..157 99   Minus

BO07793.complete Sequence

2338 bp (2338 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630933

> BO07793.complete
GAAGTTATCAGTCGACATGGCCGCTGGAATGTTGACTGATCGGGAGCGGG
AGGCGATCGTCAGCAATCTGACCAAGGACGTGCAGGCTCTGAGGGAAATG
GTGCGGAGTCGGGAGAGCGAGCTGGTCAAGCTGCACCGCGAAATCCACAA
GCTGAAGAGTGTTCTCCAGCAGACCACCAACAACCTGAACGTCACCCGAA
ATGAGAAGGCCAAAAAGAAGCTCTACTCCTTGCCAGAGCAATGTGGCGAG
CAGGAAAGTAGGAATCAGAATCCACATTTGTGCAGCTCCTGCGGCATGGT
GCTGCCCACCAGTCCGGAGTTTGCCCTGGAGGCGCTTTCTCTGGGACCGC
TGTCCCCATTAGCATCAACATCTTCCGCCTCCCCCTCTGGACGAACTTCT
GCTGATGAAGTGCGACCCAAGGCGATGCCCGCTGCTATCAAGAAACAAGG
TGTCTCCGCCGAGAGCTGTGTGCAGTCCATGCAGCAATCCTACAGCATAC
CGATTCCAAAATACGAAAAGGATTTCAGTGATAAGCAGCAAATCAAAGAC
GCCATTATGGACAATGACTTCCTAAAGAACATAGACGCATCGCAGGTGCG
GGAACTGGTAGATTCAATGTACTCCAAGAGCATAGCAGCCGGCGAGTTTG
TGATCCGCGAGGGTGAAGTGGGCGCACATCTGTACGTCTCCGCCGCCGGC
GAGTTTGCGGTGATGCAGCAGGGCAAGGTGCTGGACAAGATGGGGGCGGG
AAAGGCGTTTGGGGAGCTGGCTATCCTCTACAACTGCACCAGAACGGCCT
CCATTCGAGTCCTAAGTGAGGCCGCGAGGGTATGGGTGCTGGACAGACGG
GTCTTTCAGCAGATTATGATGTGCACGGGCCTCCAGCGAATCGAAAACAG
CGTGAACTTCCTGAGATCCGTGCCTCTGCTGATGAACCTTAGTGAGGAGC
TGCTGGCCAAGATAGCAGACGTTCTGGAGCTGGAGTTCTACGCCGCTGGC
ACCTACATCATCCGCCAAGGAACCGCCGGGGACAGTTTCTTCTTGATCTC
ACAGGGCAATGTCCGAGTGACCCAAAAACTAACTCCCACCTCCCCGGAGG
AAACGGAGTTGCGAACGCTATCCAGGGGAGACTATTTTGGAGAGCAGGCG
CTGATCAACGAGGATAAGCGAACGGCCAACATCATCGCACTGTCACCAGG
AGTTGAGTGCTTGACCCTGGACAGGGATTCCTTCAAGCGGCTAATTGGGG
ATCTATGCGAGCTGAAGGAGAAGGACTACGGCGATGAGAGCAGGAAGCTA
GCCATGAAGCAGGCGCAAGAAAGCTGCCGGGATGAGCCGAAGGAGCAGCT
GCAGCAGGAGTTCCCCGATCTCAAGCTCACGGACCTCGAGGTGGTCAGCA
CTCTTGGCATCGGAGGCTTTGGTCGGGTGGAGCTGGTCAAGGCCCACCAT
CAGGATCGCGTGGATATCTTTGCCCTAAAGTGCCTCAAGAAGCGACATAT
TGTGGACACCAAACAGGAGGAGCACATCTTCAGTGAACGTCATATCATGC
TCAGTTCGAGATCGCCCTTCATCTGCCGTTTGTATCGCACCTTCCGTGAC
GAGAAGTACGTGTATATGCTGCTCGAGGCCTGCATGGGTGGGGAGATATG
GACGATGCTCCGGGATCGCGGATCCTTCGAGGACAACGCGGCGCAGTTCA
TCATCGGGTGTGTGCTGCAGGCGTTTGAATACTTGCATGCCCGCGGGATC
ATCTATAGAGACCTTAAGCCGGAGAACCTGATGCTTGATGAGCGCGGCTA
CGTCAAGATCGTGGACTTCGGCTTTGCCAAGCAGATCGGAACGAGCTCTA
AGACGTGGACCTTCTGCGGCACCCCGGAGTACGTGGCACCCGAGATCATC
CTGAACAAGGGTCACGATCGAGCCGTAGACTACTGGGCTTTGGGCATTCT
CATTCATGAACTGCTCAACGGAACGCCACCGTTCAGTGCTCCAGATCCCA
TGCAGACGTACAATCTCATCCTGAAGGGCATTGACATGATAGCCTTTCCC
AAGCACATCTCCCGCTGGGCCGTGCAGCTCATCAAGCGACTGTGCCGCGA
TGTTCCATCGGAGCGCCTCGGCTACCAGACTGGTGGCATACAGGACATAA
AGAAACATAAGTGGTTCCTGGGATTCGACTGGGACGGCTTGGCCAGCCAG
CTGCTGATTCCGCCCTTCGTGAGACCCATCGCCCATCCGACGGATGTTCG
CTACTTCGACCGCTTTCCGTGCGATTTGAACGAGCCACCGGACGAGCTCT
CCGGCTGGGATGCGGATTTCGCAAGCTTTCTAGACCAT

BO07793.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
Pkg21D-RA 2307 CG3324-PA 1..2304 17..2320 11520 100 Plus
for-RK 2685 CG10033-PK 1957..2276 1598..1917 340 73.8 Plus
for-RA 3267 CG10033-PA 2539..2858 1598..1917 340 73.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
Pkg21D-RA 2583 CG3324-RA 170..2473 17..2320 11520 100 Plus
CG3544-RB 4359 CG3544-RB 2315..3764 1975..526 7250 100 Minus
CG3544-RB 4359 CG3544-RB 3825..4197 528..156 1865 100 Minus
CG3544-RB 4359 CG3544-RB 1928..2087 2320..2161 800 100 Minus
CG3544-RB 4359 CG3544-RB 2091..2247 2131..1975 785 100 Minus
for-RK 3223 CG10033-RK 2334..2653 1598..1917 340 73.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 786732..788181 1975..526 7250 100 Minus
2L 23513712 2L 788242..788614 528..156 1865 100 Minus
2L 23513712 2L 786476..786664 2163..1975 945 100 Minus
2L 23513712 2L 786263..786422 2320..2161 800 100 Minus
2L 23513712 2L 790489..790629 157..17 705 100 Minus
2L 23513712 2L 3623315..3623634 1917..1598 340 73.8 Minus
Blast to na_te.dros performed on 2014-11-27 08:39:23 has no hits.

BO07793.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:17 Download gff for BO07793.complete
Subject Subject Range Query Range Percent Splice Strand
Pkg21D-RA 1..2307 17..2321 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:21:04 Download gff for BO07793.complete
Subject Subject Range Query Range Percent Splice Strand
Pkg21D-RA 165..2475 14..2326 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:40 Download gff for BO07793.complete
Subject Subject Range Query Range Percent Splice Strand
Pkg21D-RA 170..2473 17..2322 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:17 Download gff for BO07793.complete
Subject Subject Range Query Range Percent Splice Strand
Pkg21D-RA 165..2475 14..2326 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:24:08 Download gff for BO07793.complete
Subject Subject Range Query Range Percent Splice Strand
Pkg21D-RA 170..2473 17..2322 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:24:08 Download gff for BO07793.complete
Subject Subject Range Query Range Percent Splice Strand
2L 786261..786422 2161..2322 98 <- Minus
2L 786479..786664 1975..2160 100 <- Minus
2L 786733..788178 529..1974 100 <- Minus
2L 788242..788612 158..528 100 <- Minus
2L 790489..790629 17..157 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:40 Download gff for BO07793.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 786261..786422 2161..2322 98 <- Minus
arm_2L 786479..786664 1975..2160 100 <- Minus
arm_2L 786733..788178 529..1974 100 <- Minus
arm_2L 788242..788612 158..528 100 <- Minus
arm_2L 790489..790629 17..157 100   Minus

BO07793.pep Sequence

Translation from 16 to 2338

> BO07793.pep
MAAGMLTDREREAIVSNLTKDVQALREMVRSRESELVKLHREIHKLKSVL
QQTTNNLNVTRNEKAKKKLYSLPEQCGEQESRNQNPHLCSSCGMVLPTSP
EFALEALSLGPLSPLASTSSASPSGRTSADEVRPKAMPAAIKKQGVSAES
CVQSMQQSYSIPIPKYEKDFSDKQQIKDAIMDNDFLKNIDASQVRELVDS
MYSKSIAAGEFVIREGEVGAHLYVSAAGEFAVMQQGKVLDKMGAGKAFGE
LAILYNCTRTASIRVLSEAARVWVLDRRVFQQIMMCTGLQRIENSVNFLR
SVPLLMNLSEELLAKIADVLELEFYAAGTYIIRQGTAGDSFFLISQGNVR
VTQKLTPTSPEETELRTLSRGDYFGEQALINEDKRTANIIALSPGVECLT
LDRDSFKRLIGDLCELKEKDYGDESRKLAMKQAQESCRDEPKEQLQQEFP
DLKLTDLEVVSTLGIGGFGRVELVKAHHQDRVDIFALKCLKKRHIVDTKQ
EEHIFSERHIMLSSRSPFICRLYRTFRDEKYVYMLLEACMGGEIWTMLRD
RGSFEDNAAQFIIGCVLQAFEYLHARGIIYRDLKPENLMLDERGYVKIVD
FGFAKQIGTSSKTWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIHELL
NGTPPFSAPDPMQTYNLILKGIDMIAFPKHISRWAVQLIKRLCRDVPSER
LGYQTGGIQDIKKHKWFLGFDWDGLASQLLIPPFVRPIAHPTDVRYFDRF
PCDLNEPPDELSGWDADFASFLDH

BO07793.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
Pkg21D-PA 768 CG3324-PA 1..768 1..768 3976 100 Plus
for-PA 1088 CG10033-PA 433..1088 108..768 1702 50.7 Plus
for-PI 1088 CG10033-PI 433..1088 108..768 1702 50.7 Plus
for-PH 1088 CG10033-PH 433..1088 108..768 1702 50.7 Plus
for-PK 894 CG10033-PK 369..894 228..768 1508 54.1 Plus