Clone Sequence Records
BO07793.3prime Sequence
864 bp (859 high quality bases) assembled on 2006-01-06
> BO07793.3prime
ATGGTCTAGAAAGCTTGCGAAATCCGCATCCCAGCCGGAGAGCTCGTCCG
GTGGCTCGTTCAAATCGCACGGAAAGCGGTCGAAGTAGCGAACATCCGTC
GGATGGGCGATGGGTCTCACGAAGGGCGGAATCAGCAGCTGGCTGGCCAA
GCCGTCCCAGTCGAATCCCAGGAACCACTTATGTTTCTTTATGTCCTGTA
TGCCACCAGTCTGGTAGCCGAGGCGCTCCGATGGAACATCGCGGCACAGT
CGCTTGATGAGCTGCACGGCCCAGCGGGAGATGTGCTTGGGAAAGGCTAT
CATGTCAATGCCCTTCAGGATGAGATTGTACGTCTGCATGGGATCTGGAG
CACTGAACGGTGGCGTTCCGTTGAGCAGTTCATGAATGAGAATGCCCAAA
GCCCAGTAGTCTACGGCTCGATCGTGACCCTTGTTCAGGATGATCTCGGG
TGCCACGTACTCCGGGGTGCCGCAGAAGGTCCACGTCTTAGAGCTCGTTC
CGATCTGCTTGGCAAAGCCGAAGTCCACGATCTTGACGTAGCCGCGCTCA
TCAAGCATCAGGTTCTCCGGCTTAAGGTCTCTATAGATGATCCCGCGGGC
ATGCAAGTATTCAAACGCCTGCAGCACACACCCGATGATGAACTGCGCCG
CGTTGTCCTCGAAGGATCCGCGATCCCGGAGCATCGTCCATATCTCCCCA
CCCATGCAGGCCTCGAGCAGCATATACACGTACTTCTCGTCACGGAAGGT
GCGATACAAACGGCAGATGAAGGGCGATCTCGAACTGAGCATGATATGAC
GTTCACTGAAGATGTGCTCCTCCTGTTTGGTGTCCACAATATGTCGCTTC
TTGAGGCACTTTAG
BO07793.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3324-PA | 2307 | Pkg21D-RA | 1459..2304 | 864..19 | 4230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:44:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pkg21D-RA | 2583 | CG3324-RA | 1628..2473 | 864..19 | 4230 | 100 | Minus |
CG3544-RB | 4359 | CG3544-RB | 2315..2815 | 364..864 | 2505 | 100 | Plus |
CG3544-RB | 4359 | CG3544-RB | 1928..2087 | 19..178 | 800 | 100 | Plus |
CG3544-RB | 4359 | CG3544-RB | 2091..2247 | 208..364 | 785 | 100 | Plus |
for-RK | 3223 | CG10033-RK | 2334..2653 | 741..422 | 340 | 74.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:44:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 786732..787232 | 364..864 | 2505 | 100 | Plus |
2L | 23513712 | 2L | 786476..786664 | 176..364 | 945 | 100 | Plus |
2L | 23513712 | 2L | 786263..786422 | 19..178 | 800 | 100 | Plus |
2L | 23513712 | 2L | 3623315..3623634 | 422..741 | 340 | 73.8 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:44:48 has no hits.
BO07793.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:23 Download gff for
BO07793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3324-PA | 1459..2307 | 18..864 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:04 Download gff for
BO07793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3324-PA | 1459..2307 | 18..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:10:44 Download gff for
BO07793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pkg21D-RA | 1628..2478 | 13..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:21:28 Download gff for
BO07793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pkg21D-RA | 1628..2478 | 13..864 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:21:28 Download gff for
BO07793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 786258..786422 | 13..178 | 98 | <- | Plus |
2L | 786479..786664 | 179..364 | 100 | <- | Plus |
2L | 786733..787232 | 365..864 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:10:44 Download gff for
BO07793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 786258..786422 | 13..178 | 98 | <- | Plus |
arm_2L | 786479..786664 | 179..364 | 100 | <- | Plus |
arm_2L | 786733..787232 | 365..864 | 100 | | Plus |
BO07793.5prime Sequence
873 bp (852 high quality bases) assembled on 2006-01-06
> BO07793.5prime
GAAGTTATCAGTCGACATGGCCGCTGGAATGTTGACTGATCGGGAGCGGG
AGGCGATCGTCAGCAATCTGACCAAGGACGTGCAGGCTCTGAGGGAAATG
GTGCGGAGTCGGGAGAGCGAGCTGGTCAAGCTGCACCGCGAAATCCACAA
GCTGAAGAGTGTTCTCCAGCAGACCACCAACAACCTGAACGTCACCCGAA
ATGAGAAGGCCAAAAAGAAGCTCTACTCCTTGCCAGAGCAATGTGGCGAG
CAGGAAAGTAGGAATCAGAATCCACATTTGTGCAGCTCCTGCGGCATGGT
GCTGCCCACCAGTCCGGAGTTTGCCCTGGAGGCGCTTTCTCTGGGACCGC
TGTCCCCATTAGCATCAACATCTTCCGCCTCCCCCTCTGGACGAACTTCT
GCTGATGAAGTGCGACCCAAGGCGATGCCCGCTGCTATCAAGAAACAAGG
TGTCTCCGCCGAGAGCTGTGTGCAGTCCATGCAGCAATCCTACAGCATAC
CGATTCCAAAATACGAAAAGGATTTCAGTGATAAGCAGCAAATCAAAGAC
GCCATTATGGACAATGACTTCCTAAAGAACATAGACGCATCGCAGGTGCG
GGAACTGGTAGATTCAATGTACTCCAAGAGCATAGCAGCCGGCGAGTTTG
TGATCCGCGAGGGTGAAGTGGGCGCACATCTGTACGTCTCCGCCGCCGGC
GAGTTTGCGGTGATGCAGCAGGGCAAGGTGCTGGACAAGATGGGGGCGGG
AAAGGCGTTTGGGGAGCTGGCTATCCTCTACAACTGCACCAGAACGGCCT
CCATTCGAGTCCTAAGTGAGGCCGCGAGGGTATGGGTGCTGGACAGACGG
GTCTTTCAGCAGATTATGATGTG
BO07793.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3324-PA | 2307 | Pkg21D-RA | 1..857 | 17..873 | 4285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:36:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pkg21D-RA | 2583 | CG3324-RA | 170..1026 | 17..873 | 4285 | 100 | Plus |
CG3544-RB | 4359 | CG3544-RB | 3825..4197 | 528..156 | 1865 | 100 | Minus |
CG3544-RB | 4359 | CG3544-RB | 3417..3764 | 873..526 | 1740 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:36:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 788242..788614 | 528..156 | 1865 | 100 | Minus |
2L | 23513712 | 2L | 787834..788181 | 873..526 | 1740 | 100 | Minus |
2L | 23513712 | 2L | 790489..790629 | 157..17 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:36:15 has no hits.
BO07793.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:24 Download gff for
BO07793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3324-PA | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:05 Download gff for
BO07793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3324-PA | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:05:01 Download gff for
BO07793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pkg21D-RA | 168..1026 | 14..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:50:19 Download gff for
BO07793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pkg21D-RA | 168..1026 | 14..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:50:19 Download gff for
BO07793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 790489..790631 | 14..157 | 99 | | Minus |
2L | 787834..788178 | 529..873 | 100 | <- | Minus |
2L | 788242..788612 | 158..528 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:05:01 Download gff for
BO07793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 787834..788178 | 529..873 | 100 | <- | Minus |
arm_2L | 788242..788612 | 158..528 | 100 | <- | Minus |
arm_2L | 790489..790631 | 14..157 | 99 | | Minus |
BO07793.complete Sequence
2338 bp (2338 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630933
> BO07793.complete
GAAGTTATCAGTCGACATGGCCGCTGGAATGTTGACTGATCGGGAGCGGG
AGGCGATCGTCAGCAATCTGACCAAGGACGTGCAGGCTCTGAGGGAAATG
GTGCGGAGTCGGGAGAGCGAGCTGGTCAAGCTGCACCGCGAAATCCACAA
GCTGAAGAGTGTTCTCCAGCAGACCACCAACAACCTGAACGTCACCCGAA
ATGAGAAGGCCAAAAAGAAGCTCTACTCCTTGCCAGAGCAATGTGGCGAG
CAGGAAAGTAGGAATCAGAATCCACATTTGTGCAGCTCCTGCGGCATGGT
GCTGCCCACCAGTCCGGAGTTTGCCCTGGAGGCGCTTTCTCTGGGACCGC
TGTCCCCATTAGCATCAACATCTTCCGCCTCCCCCTCTGGACGAACTTCT
GCTGATGAAGTGCGACCCAAGGCGATGCCCGCTGCTATCAAGAAACAAGG
TGTCTCCGCCGAGAGCTGTGTGCAGTCCATGCAGCAATCCTACAGCATAC
CGATTCCAAAATACGAAAAGGATTTCAGTGATAAGCAGCAAATCAAAGAC
GCCATTATGGACAATGACTTCCTAAAGAACATAGACGCATCGCAGGTGCG
GGAACTGGTAGATTCAATGTACTCCAAGAGCATAGCAGCCGGCGAGTTTG
TGATCCGCGAGGGTGAAGTGGGCGCACATCTGTACGTCTCCGCCGCCGGC
GAGTTTGCGGTGATGCAGCAGGGCAAGGTGCTGGACAAGATGGGGGCGGG
AAAGGCGTTTGGGGAGCTGGCTATCCTCTACAACTGCACCAGAACGGCCT
CCATTCGAGTCCTAAGTGAGGCCGCGAGGGTATGGGTGCTGGACAGACGG
GTCTTTCAGCAGATTATGATGTGCACGGGCCTCCAGCGAATCGAAAACAG
CGTGAACTTCCTGAGATCCGTGCCTCTGCTGATGAACCTTAGTGAGGAGC
TGCTGGCCAAGATAGCAGACGTTCTGGAGCTGGAGTTCTACGCCGCTGGC
ACCTACATCATCCGCCAAGGAACCGCCGGGGACAGTTTCTTCTTGATCTC
ACAGGGCAATGTCCGAGTGACCCAAAAACTAACTCCCACCTCCCCGGAGG
AAACGGAGTTGCGAACGCTATCCAGGGGAGACTATTTTGGAGAGCAGGCG
CTGATCAACGAGGATAAGCGAACGGCCAACATCATCGCACTGTCACCAGG
AGTTGAGTGCTTGACCCTGGACAGGGATTCCTTCAAGCGGCTAATTGGGG
ATCTATGCGAGCTGAAGGAGAAGGACTACGGCGATGAGAGCAGGAAGCTA
GCCATGAAGCAGGCGCAAGAAAGCTGCCGGGATGAGCCGAAGGAGCAGCT
GCAGCAGGAGTTCCCCGATCTCAAGCTCACGGACCTCGAGGTGGTCAGCA
CTCTTGGCATCGGAGGCTTTGGTCGGGTGGAGCTGGTCAAGGCCCACCAT
CAGGATCGCGTGGATATCTTTGCCCTAAAGTGCCTCAAGAAGCGACATAT
TGTGGACACCAAACAGGAGGAGCACATCTTCAGTGAACGTCATATCATGC
TCAGTTCGAGATCGCCCTTCATCTGCCGTTTGTATCGCACCTTCCGTGAC
GAGAAGTACGTGTATATGCTGCTCGAGGCCTGCATGGGTGGGGAGATATG
GACGATGCTCCGGGATCGCGGATCCTTCGAGGACAACGCGGCGCAGTTCA
TCATCGGGTGTGTGCTGCAGGCGTTTGAATACTTGCATGCCCGCGGGATC
ATCTATAGAGACCTTAAGCCGGAGAACCTGATGCTTGATGAGCGCGGCTA
CGTCAAGATCGTGGACTTCGGCTTTGCCAAGCAGATCGGAACGAGCTCTA
AGACGTGGACCTTCTGCGGCACCCCGGAGTACGTGGCACCCGAGATCATC
CTGAACAAGGGTCACGATCGAGCCGTAGACTACTGGGCTTTGGGCATTCT
CATTCATGAACTGCTCAACGGAACGCCACCGTTCAGTGCTCCAGATCCCA
TGCAGACGTACAATCTCATCCTGAAGGGCATTGACATGATAGCCTTTCCC
AAGCACATCTCCCGCTGGGCCGTGCAGCTCATCAAGCGACTGTGCCGCGA
TGTTCCATCGGAGCGCCTCGGCTACCAGACTGGTGGCATACAGGACATAA
AGAAACATAAGTGGTTCCTGGGATTCGACTGGGACGGCTTGGCCAGCCAG
CTGCTGATTCCGCCCTTCGTGAGACCCATCGCCCATCCGACGGATGTTCG
CTACTTCGACCGCTTTCCGTGCGATTTGAACGAGCCACCGGACGAGCTCT
CCGGCTGGGATGCGGATTTCGCAAGCTTTCTAGACCAT
BO07793.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:39:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pkg21D-RA | 2307 | CG3324-PA | 1..2304 | 17..2320 | 11520 | 100 | Plus |
for-RK | 2685 | CG10033-PK | 1957..2276 | 1598..1917 | 340 | 73.8 | Plus |
for-RA | 3267 | CG10033-PA | 2539..2858 | 1598..1917 | 340 | 73.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:39:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pkg21D-RA | 2583 | CG3324-RA | 170..2473 | 17..2320 | 11520 | 100 | Plus |
CG3544-RB | 4359 | CG3544-RB | 2315..3764 | 1975..526 | 7250 | 100 | Minus |
CG3544-RB | 4359 | CG3544-RB | 3825..4197 | 528..156 | 1865 | 100 | Minus |
CG3544-RB | 4359 | CG3544-RB | 1928..2087 | 2320..2161 | 800 | 100 | Minus |
CG3544-RB | 4359 | CG3544-RB | 2091..2247 | 2131..1975 | 785 | 100 | Minus |
for-RK | 3223 | CG10033-RK | 2334..2653 | 1598..1917 | 340 | 73.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:39:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 786732..788181 | 1975..526 | 7250 | 100 | Minus |
2L | 23513712 | 2L | 788242..788614 | 528..156 | 1865 | 100 | Minus |
2L | 23513712 | 2L | 786476..786664 | 2163..1975 | 945 | 100 | Minus |
2L | 23513712 | 2L | 786263..786422 | 2320..2161 | 800 | 100 | Minus |
2L | 23513712 | 2L | 790489..790629 | 157..17 | 705 | 100 | Minus |
2L | 23513712 | 2L | 3623315..3623634 | 1917..1598 | 340 | 73.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:39:23 has no hits.
BO07793.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:17 Download gff for
BO07793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pkg21D-RA | 1..2307 | 17..2321 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:21:04 Download gff for
BO07793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pkg21D-RA | 165..2475 | 14..2326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:40 Download gff for
BO07793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pkg21D-RA | 170..2473 | 17..2322 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:17 Download gff for
BO07793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pkg21D-RA | 165..2475 | 14..2326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:24:08 Download gff for
BO07793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pkg21D-RA | 170..2473 | 17..2322 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:24:08 Download gff for
BO07793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 786261..786422 | 2161..2322 | 98 | <- | Minus |
2L | 786479..786664 | 1975..2160 | 100 | <- | Minus |
2L | 786733..788178 | 529..1974 | 100 | <- | Minus |
2L | 788242..788612 | 158..528 | 100 | <- | Minus |
2L | 790489..790629 | 17..157 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:40 Download gff for
BO07793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 786261..786422 | 2161..2322 | 98 | <- | Minus |
arm_2L | 786479..786664 | 1975..2160 | 100 | <- | Minus |
arm_2L | 786733..788178 | 529..1974 | 100 | <- | Minus |
arm_2L | 788242..788612 | 158..528 | 100 | <- | Minus |
arm_2L | 790489..790629 | 17..157 | 100 | | Minus |
BO07793.pep Sequence
Translation from 16 to 2338
> BO07793.pep
MAAGMLTDREREAIVSNLTKDVQALREMVRSRESELVKLHREIHKLKSVL
QQTTNNLNVTRNEKAKKKLYSLPEQCGEQESRNQNPHLCSSCGMVLPTSP
EFALEALSLGPLSPLASTSSASPSGRTSADEVRPKAMPAAIKKQGVSAES
CVQSMQQSYSIPIPKYEKDFSDKQQIKDAIMDNDFLKNIDASQVRELVDS
MYSKSIAAGEFVIREGEVGAHLYVSAAGEFAVMQQGKVLDKMGAGKAFGE
LAILYNCTRTASIRVLSEAARVWVLDRRVFQQIMMCTGLQRIENSVNFLR
SVPLLMNLSEELLAKIADVLELEFYAAGTYIIRQGTAGDSFFLISQGNVR
VTQKLTPTSPEETELRTLSRGDYFGEQALINEDKRTANIIALSPGVECLT
LDRDSFKRLIGDLCELKEKDYGDESRKLAMKQAQESCRDEPKEQLQQEFP
DLKLTDLEVVSTLGIGGFGRVELVKAHHQDRVDIFALKCLKKRHIVDTKQ
EEHIFSERHIMLSSRSPFICRLYRTFRDEKYVYMLLEACMGGEIWTMLRD
RGSFEDNAAQFIIGCVLQAFEYLHARGIIYRDLKPENLMLDERGYVKIVD
FGFAKQIGTSSKTWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIHELL
NGTPPFSAPDPMQTYNLILKGIDMIAFPKHISRWAVQLIKRLCRDVPSER
LGYQTGGIQDIKKHKWFLGFDWDGLASQLLIPPFVRPIAHPTDVRYFDRF
PCDLNEPPDELSGWDADFASFLDH
BO07793.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:36:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pkg21D-PA | 768 | CG3324-PA | 1..768 | 1..768 | 3976 | 100 | Plus |
for-PA | 1088 | CG10033-PA | 433..1088 | 108..768 | 1702 | 50.7 | Plus |
for-PI | 1088 | CG10033-PI | 433..1088 | 108..768 | 1702 | 50.7 | Plus |
for-PH | 1088 | CG10033-PH | 433..1088 | 108..768 | 1702 | 50.7 | Plus |
for-PK | 894 | CG10033-PK | 369..894 | 228..768 | 1508 | 54.1 | Plus |