Clone BO07796 Report

Search the DGRC for BO07796

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:77
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG1809-RA
Protein status:BO07796.pep: validated full length
Sequenced Size:1579

Clone Sequence Records

BO07796.3prime Sequence

928 bp (818 high quality bases) assembled on 2006-01-06

> BO07796.3prime
ATGGTCTAGAAAGCTTGCGGCATAGGGCCCGATACCCGCTGCTCTGGCCA
TCAGCGCCGGAATATTGCTTTGCTCGTAGTTGCCACTGAAGTACTGGGCA
TAGGGTCCCGAGGCATACACCGCCACATCATCTCCTCCGTGGGTTTCTGC
GTCCAAGGGCGCCAGCGTGGGATACTGATAGTCTGAGTCCGCAACCAACT
TCTCCTTTAGAAGGGCACGTCCCTCAGCGCGATTGTAGCCGGAGTAGTAG
CCAGGTCCATTGGCATAGGACAAAATCGTATAGGGCAGATTATCATCCGC
CAGTTGAGCCAATCCGGTGATCTCCTGGTCACGATAAGGATAACCATTGA
TGGACATAACATGAGCATGATCAGCGGTCACCACGATCAGTGTGTCATCC
TCGGAGGTAAGTTCGCGAGCCTTCTGGACAGCCCTCGCAAACTCGGCGGT
ATCCTCGAGGGATCTCTTGGCGAAGGTATCGTGGTGGGCCATGTCGATAC
GAGCACCCTCGACGAAGAGAAAGAATCCCTTGTCATTGCGGCTCAACACC
GTGATGGCAGCCTCCGTGAGCTCACTCAGCGAAGGATCCGCCAACTGACT
ACGTTTCCTGTCCCGATCACCGTTGTACGGCAGATGATCATTGGCAAAGA
GACCCAATAGGTAGTCCGTATTCTCGAGATCCACCAGACTGAGTCCCTTG
CGACTCCACACGTATTTGGCTGAGACATTGGCCTCCTTCTTCTGATCCAA
CCAACTGCGGATTAAGTGACGACCGTCGGTACGCTTGCCGGGATAACCCT
CCTCATCATTTACCGTTGCGTCGATGAAGTTCTTGCGACCGCCTCCCAGG
ATTACCTTCAGCTGCTGACCCCACAGCTGCTCCCCAAGCTGACGGGCAAT
ATCGATGGTCTGCCTCGGATCGCACTCC

BO07796.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG1809-PA 1548 CG1809-RA 693..1545 871..19 4240 99.8 Minus
CG1809-PA 1548 CG1809-RA 651..688 913..876 140 94.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG1809-RA 1686 CG1809-RA 697..1606 928..19 4415 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9562814..9563405 928..337 2810 98.3 Minus
2R 25286936 2R 9563474..9563791 336..19 1590 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:02:52 has no hits.

BO07796.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:29 Download gff for BO07796.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1809-PA 636..1548 18..928 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:13 Download gff for BO07796.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1809-PA 636..1548 18..928 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:08:51 Download gff for BO07796.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1809-RA 697..1614 10..928 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:33:44 Download gff for BO07796.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1809-RA 697..1614 10..928 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:44 Download gff for BO07796.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9562814..9563405 337..928 98 -> Minus
2R 9563474..9563799 10..336 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:08:51 Download gff for BO07796.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5450319..5450910 337..928 98 -> Minus
arm_2R 5450979..5451304 10..336 98   Minus

BO07796.5prime Sequence

858 bp (814 high quality bases) assembled on 2006-01-06

> BO07796.5prime
GAAGTTATCAGTCGACATGGCCAGGAGATTCATTCTGTTGCTCGTCTTAG
CTGTCTGCCTGAGCGGAAGTGCCAGCGGACAAAGAGACCACCCTCGTGGG
CGTTCCTTTGATGCCGAATCGCATCCGATCAAGTATGCAGAGGAGCAGCA
GACCCAGTACTGGGTGGATAAGGCCCAGGCGAAGCTGTTATCGAAGCTGG
CCGAGCAGGAGTCCGCGACCACAAACAAGGCGAAGAACGTGATTCTGTTC
CTGGGCGATGGAATGTCCGTTCACACGGTCACGGCCACCAGGAATCTGCT
AGGCGACAGTGCGGAGCAGGTGTACTTTGAGGGATTTCCCTACACTGGCT
TGTCCAAGACCTACTGCGTAAACCGCCAGGTGGCCGATTCTGCTTGCACG
GCCACCGCCTATTTGGGCGGTGTGAAGGCGAACTATGGAACGATTGGCGT
TAACGCCAATGTGTCCAGGTACAGCTGTGATGGCGCCGCCAACGAGGAGG
ATCGGGTGCTCAGCATCGCGCATTGGGCACAGGCGGCTGGCAAGGATGCA
GGTCTGGTGACTACAGCCCGGGTAACTCATGCATCCCCAGCTGGTGTTTA
TGCCCACATCGCGGATCGCAATTGGGAGAACGACTGGGAGGTGGCCAACA
GGGAGTGCGATCCCGAGCAGACCATCGATATTGCCCGTCAGCTCGTGGAG
CAGCCTGTGGGTCAGCAGCTGAAGGTAATCCTTGGAGGCGGTCGCAAGAA
CTTCATCGACGCAACGGTAAATGATGAGGAGGGTTATCCCGGCAAGCGTA
CCGACGGTCGTCACTTAATCCGCAGTTGGTTGGATCAGAAGAAGGAGGCC
AATGTCTC

BO07796.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG1809-PA 1548 CG1809-RA 1..842 17..858 4210 100 Plus
CG8105-PA 1452 CG8105-RA 382..414 395..427 140 96.9 Plus
CG8147-PA 1641 CG8147-RA 421..488 377..444 140 88.2 Plus
CG8147-PB 1641 CG8147-RB 421..488 377..444 140 88.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1809-RA 1686 CG1809-RA 62..903 17..858 4210 100 Plus
CG8147-RA 1862 CG8147-RA 486..575 355..444 225 83.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9562247..9563020 85..858 3870 100 Plus
2R 25286936 2R 9561699..9561768 17..86 350 100 Plus
3R 32079331 3R 9495347..9495436 355..444 225 83.3 Plus
Blast to na_te.dros performed on 2015-02-12 00:18:43 has no hits.

BO07796.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:30 Download gff for BO07796.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1809-PA 1..842 17..858 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:15 Download gff for BO07796.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1809-PA 1..842 17..858 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:49:08 Download gff for BO07796.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1809-RA 62..903 17..858 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:55:42 Download gff for BO07796.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1809-RA 62..903 17..858 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:55:42 Download gff for BO07796.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9561699..9561768 17..86 100 -> Plus
2R 9562249..9563020 87..858 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:49:08 Download gff for BO07796.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5449204..5449273 17..86 100 -> Plus
arm_2R 5449754..5450525 87..858 100   Plus

BO07796.complete Sequence

1579 bp (1579 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630934

> BO07796.complete
GAAGTTATCAGTCGACATGGCCAGGAGATTCATTCTGTTGCTCGTCTTAG
CTGTCTGCCTGAGCGGAAGTGCCAGCGGACAAAGAGACCACCCTCGTGGG
CGTTCCTTTGATGCCGAATCGCATCCGATCAAGTATGCAGAGGAGCAGCA
GACCCAGTACTGGGTGGATAAGGCCCAGGCGAAGCTGTTATCGAAGCTGG
CCGAGCAGGAGTCCGCGACCACAAACAAGGCGAAGAACGTGATTCTGTTC
CTGGGCGATGGAATGTCCGTTCACACGGTCACGGCCACCAGGAATCTGCT
AGGCGACAGTGCGGAGCAGGTGTACTTTGAGGGATTTCCCTACACTGGCT
TGTCCAAGACCTACTGCGTAAACCGCCAGGTGGCCGATTCTGCTTGCACG
GCCACCGCCTATTTGGGCGGTGTGAAGGCGAACTATGGAACGATTGGCGT
TAACGCCAATGTGTCCAGGTACAGCTGTGATGGCGCCGCCAACGAGGAGG
ATCGGGTGCTCAGCATCGCGCATTGGGCACAGGCGGCTGGCAAGGATGCA
GGTCTGGTGACTACAGCCCGGGTAACTCATGCATCCCCAGCTGGTGTTTA
TGCCCACATCGCGGATCGCAATTGGGAGAACGACTGGGAGGTGGCCAACA
GGGAGTGCGATCCCGAGCAGACCATCGATATTGCCCGTCAGCTCGTGGAG
CAGCCTGTGGGTCAGCAGCTGAAGGTAATCCTTGGAGGCGGTCGCAAGAA
CTTCATCGACGCAACGGTAAATGATGAGGAGGGTTATCCCGGCAAGCGTA
CCGACGGTCGTCACTTAATCCGCAGTTGGTTGGATCAGAAGAAGGAGGCC
AATGTCTCAGCCAAATACGTGTGGAGTCGCAAGGGACTCAGTCTGGTGGA
TCTCGAGAATACGGACTACCTATTGGGTCTCTTTGCCAATGATCATCTGC
CGTACAACGGTGATCGGGACAGGAAACGTAGTCAGTTGGCGGATCCTTCG
CTGAGTGAGCTCACGGAGGCTGCCATCACGGTGTTGAGCCGCAATGACAA
GGGATTCTTTCTCTTCGTCGAGGGTGCTCGTATCGACATGGCCCACCACG
ATACCTTCGCCAAGAGATCCCTCGAGGATACCGCCGAGTTTGCGAGGGCT
GTCCAGAAGGCTCGCGAACTTACCTCCGAGGATGACACACTGATCGTGGT
GACCGCTGATCATGCTCATGTTATGTCCATCAATGGTTATCCTTATCGTG
ACCAGGAGATCACCGGATTGGCTCAACTGGCGGATGATAATCTGCCCTAT
ACGATTTTGTCCTATGCCAATGGACCTGGCTACTACTCCGGCTACAATCG
CGCTGAGGGACGTGCCCTTCTAAAGGAGAAGTTGGTTGCGGACTCAGACT
ATCAGTATCCCACGCTGGCGCCCTTGGACGCAGAAACCCACGGAGGAGAT
GATGTGGCGGTGTATGCCTCGGGACCCTATGCCCAGTACTTCAGTGGCAA
CTACGAGCAAAGCAATATTCCGGCGCTGATGGCCAGAGCAGCGGGTATCG
GGCCCTATGCCGCAAGCTTTCTAGACCAT

BO07796.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG1809-RA 1548 CG1809-PA 1..1545 17..1561 7725 100 Plus
CG8147-RA 1641 CG8147-PA 399..488 355..444 225 83.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG1809-RA 1686 CG1809-RA 62..1606 17..1561 7725 100 Plus
CG8147-RA 1862 CG8147-RA 486..575 355..444 225 83.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:23:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9562247..9563405 85..1243 5795 100 Plus
2R 25286936 2R 9563474..9563791 1244..1561 1590 100 Plus
2R 25286936 2R 9561699..9561768 17..86 350 100 Plus
3R 32079331 3R 9495347..9495436 355..444 225 83.3 Plus
Blast to na_te.dros performed on 2014-11-27 15:24:01 has no hits.

BO07796.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:45 Download gff for BO07796.complete
Subject Subject Range Query Range Percent Splice Strand
CG1809-RA 1..1548 17..1562 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:22 Download gff for BO07796.complete
Subject Subject Range Query Range Percent Splice Strand
CG1809-RA 51..1603 17..1570 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:18 Download gff for BO07796.complete
Subject Subject Range Query Range Percent Splice Strand
CG1809-RA 62..1606 17..1563 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:45 Download gff for BO07796.complete
Subject Subject Range Query Range Percent Splice Strand
CG1809-RA 51..1603 17..1570 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:46 Download gff for BO07796.complete
Subject Subject Range Query Range Percent Splice Strand
CG1809-RA 62..1606 17..1563 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:46 Download gff for BO07796.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9561699..9561768 17..86 100 -> Plus
2R 9562249..9563405 87..1243 100 -> Plus
2R 9563474..9563791 1244..1563 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:18 Download gff for BO07796.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5449204..5449273 17..86 100 -> Plus
arm_2R 5449754..5450910 87..1243 100 -> Plus
arm_2R 5450979..5451296 1244..1563 99   Plus

BO07796.pep Sequence

Translation from 16 to 1579

> BO07796.pep
MARRFILLLVLAVCLSGSASGQRDHPRGRSFDAESHPIKYAEEQQTQYWV
DKAQAKLLSKLAEQESATTNKAKNVILFLGDGMSVHTVTATRNLLGDSAE
QVYFEGFPYTGLSKTYCVNRQVADSACTATAYLGGVKANYGTIGVNANVS
RYSCDGAANEEDRVLSIAHWAQAAGKDAGLVTTARVTHASPAGVYAHIAD
RNWENDWEVANRECDPEQTIDIARQLVEQPVGQQLKVILGGGRKNFIDAT
VNDEEGYPGKRTDGRHLIRSWLDQKKEANVSAKYVWSRKGLSLVDLENTD
YLLGLFANDHLPYNGDRDRKRSQLADPSLSELTEAAITVLSRNDKGFFLF
VEGARIDMAHHDTFAKRSLEDTAEFARAVQKARELTSEDDTLIVVTADHA
HVMSINGYPYRDQEITGLAQLADDNLPYTILSYANGPGYYSGYNRAEGRA
LLKEKLVADSDYQYPTLAPLDAETHGGDDVAVYASGPYAQYFSGNYEQSN
IPALMARAAGIGPYAASFLDH

BO07796.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG1809-PA 515 CG1809-PA 1..515 1..515 2679 100 Plus
CG10592-PA 524 CG10592-PA 11..517 5..515 1488 57.9 Plus
CG8147-PA 546 CG8147-PA 1..528 1..509 1187 49.4 Plus
CG5656-PA 523 CG5656-PA 3..508 2..513 1101 47.8 Plus
CG10827-PA 522 CG10827-PA 57..515 43..512 1093 50.1 Plus