Clone Sequence Records
BO07796.3prime Sequence
928 bp (818 high quality bases) assembled on 2006-01-06
> BO07796.3prime
ATGGTCTAGAAAGCTTGCGGCATAGGGCCCGATACCCGCTGCTCTGGCCA
TCAGCGCCGGAATATTGCTTTGCTCGTAGTTGCCACTGAAGTACTGGGCA
TAGGGTCCCGAGGCATACACCGCCACATCATCTCCTCCGTGGGTTTCTGC
GTCCAAGGGCGCCAGCGTGGGATACTGATAGTCTGAGTCCGCAACCAACT
TCTCCTTTAGAAGGGCACGTCCCTCAGCGCGATTGTAGCCGGAGTAGTAG
CCAGGTCCATTGGCATAGGACAAAATCGTATAGGGCAGATTATCATCCGC
CAGTTGAGCCAATCCGGTGATCTCCTGGTCACGATAAGGATAACCATTGA
TGGACATAACATGAGCATGATCAGCGGTCACCACGATCAGTGTGTCATCC
TCGGAGGTAAGTTCGCGAGCCTTCTGGACAGCCCTCGCAAACTCGGCGGT
ATCCTCGAGGGATCTCTTGGCGAAGGTATCGTGGTGGGCCATGTCGATAC
GAGCACCCTCGACGAAGAGAAAGAATCCCTTGTCATTGCGGCTCAACACC
GTGATGGCAGCCTCCGTGAGCTCACTCAGCGAAGGATCCGCCAACTGACT
ACGTTTCCTGTCCCGATCACCGTTGTACGGCAGATGATCATTGGCAAAGA
GACCCAATAGGTAGTCCGTATTCTCGAGATCCACCAGACTGAGTCCCTTG
CGACTCCACACGTATTTGGCTGAGACATTGGCCTCCTTCTTCTGATCCAA
CCAACTGCGGATTAAGTGACGACCGTCGGTACGCTTGCCGGGATAACCCT
CCTCATCATTTACCGTTGCGTCGATGAAGTTCTTGCGACCGCCTCCCAGG
ATTACCTTCAGCTGCTGACCCCACAGCTGCTCCCCAAGCTGACGGGCAAT
ATCGATGGTCTGCCTCGGATCGCACTCC
BO07796.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1809-PA | 1548 | CG1809-RA | 693..1545 | 871..19 | 4240 | 99.8 | Minus |
CG1809-PA | 1548 | CG1809-RA | 651..688 | 913..876 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:02:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1809-RA | 1686 | CG1809-RA | 697..1606 | 928..19 | 4415 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:02:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9562814..9563405 | 928..337 | 2810 | 98.3 | Minus |
2R | 25286936 | 2R | 9563474..9563791 | 336..19 | 1590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:02:52 has no hits.
BO07796.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:29 Download gff for
BO07796.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1809-PA | 636..1548 | 18..928 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:13 Download gff for
BO07796.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1809-PA | 636..1548 | 18..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:08:51 Download gff for
BO07796.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1809-RA | 697..1614 | 10..928 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:33:44 Download gff for
BO07796.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1809-RA | 697..1614 | 10..928 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:44 Download gff for
BO07796.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9562814..9563405 | 337..928 | 98 | -> | Minus |
2R | 9563474..9563799 | 10..336 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:08:51 Download gff for
BO07796.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5450319..5450910 | 337..928 | 98 | -> | Minus |
arm_2R | 5450979..5451304 | 10..336 | 98 | | Minus |
BO07796.5prime Sequence
858 bp (814 high quality bases) assembled on 2006-01-06
> BO07796.5prime
GAAGTTATCAGTCGACATGGCCAGGAGATTCATTCTGTTGCTCGTCTTAG
CTGTCTGCCTGAGCGGAAGTGCCAGCGGACAAAGAGACCACCCTCGTGGG
CGTTCCTTTGATGCCGAATCGCATCCGATCAAGTATGCAGAGGAGCAGCA
GACCCAGTACTGGGTGGATAAGGCCCAGGCGAAGCTGTTATCGAAGCTGG
CCGAGCAGGAGTCCGCGACCACAAACAAGGCGAAGAACGTGATTCTGTTC
CTGGGCGATGGAATGTCCGTTCACACGGTCACGGCCACCAGGAATCTGCT
AGGCGACAGTGCGGAGCAGGTGTACTTTGAGGGATTTCCCTACACTGGCT
TGTCCAAGACCTACTGCGTAAACCGCCAGGTGGCCGATTCTGCTTGCACG
GCCACCGCCTATTTGGGCGGTGTGAAGGCGAACTATGGAACGATTGGCGT
TAACGCCAATGTGTCCAGGTACAGCTGTGATGGCGCCGCCAACGAGGAGG
ATCGGGTGCTCAGCATCGCGCATTGGGCACAGGCGGCTGGCAAGGATGCA
GGTCTGGTGACTACAGCCCGGGTAACTCATGCATCCCCAGCTGGTGTTTA
TGCCCACATCGCGGATCGCAATTGGGAGAACGACTGGGAGGTGGCCAACA
GGGAGTGCGATCCCGAGCAGACCATCGATATTGCCCGTCAGCTCGTGGAG
CAGCCTGTGGGTCAGCAGCTGAAGGTAATCCTTGGAGGCGGTCGCAAGAA
CTTCATCGACGCAACGGTAAATGATGAGGAGGGTTATCCCGGCAAGCGTA
CCGACGGTCGTCACTTAATCCGCAGTTGGTTGGATCAGAAGAAGGAGGCC
AATGTCTC
BO07796.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1809-PA | 1548 | CG1809-RA | 1..842 | 17..858 | 4210 | 100 | Plus |
CG8105-PA | 1452 | CG8105-RA | 382..414 | 395..427 | 140 | 96.9 | Plus |
CG8147-PA | 1641 | CG8147-RA | 421..488 | 377..444 | 140 | 88.2 | Plus |
CG8147-PB | 1641 | CG8147-RB | 421..488 | 377..444 | 140 | 88.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:18:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1809-RA | 1686 | CG1809-RA | 62..903 | 17..858 | 4210 | 100 | Plus |
CG8147-RA | 1862 | CG8147-RA | 486..575 | 355..444 | 225 | 83.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:18:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9562247..9563020 | 85..858 | 3870 | 100 | Plus |
2R | 25286936 | 2R | 9561699..9561768 | 17..86 | 350 | 100 | Plus |
3R | 32079331 | 3R | 9495347..9495436 | 355..444 | 225 | 83.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:18:43 has no hits.
BO07796.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:30 Download gff for
BO07796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1809-PA | 1..842 | 17..858 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:15 Download gff for
BO07796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1809-PA | 1..842 | 17..858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:49:08 Download gff for
BO07796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1809-RA | 62..903 | 17..858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:55:42 Download gff for
BO07796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1809-RA | 62..903 | 17..858 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:55:42 Download gff for
BO07796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9561699..9561768 | 17..86 | 100 | -> | Plus |
2R | 9562249..9563020 | 87..858 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:49:08 Download gff for
BO07796.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5449204..5449273 | 17..86 | 100 | -> | Plus |
arm_2R | 5449754..5450525 | 87..858 | 100 | | Plus |
BO07796.complete Sequence
1579 bp (1579 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630934
> BO07796.complete
GAAGTTATCAGTCGACATGGCCAGGAGATTCATTCTGTTGCTCGTCTTAG
CTGTCTGCCTGAGCGGAAGTGCCAGCGGACAAAGAGACCACCCTCGTGGG
CGTTCCTTTGATGCCGAATCGCATCCGATCAAGTATGCAGAGGAGCAGCA
GACCCAGTACTGGGTGGATAAGGCCCAGGCGAAGCTGTTATCGAAGCTGG
CCGAGCAGGAGTCCGCGACCACAAACAAGGCGAAGAACGTGATTCTGTTC
CTGGGCGATGGAATGTCCGTTCACACGGTCACGGCCACCAGGAATCTGCT
AGGCGACAGTGCGGAGCAGGTGTACTTTGAGGGATTTCCCTACACTGGCT
TGTCCAAGACCTACTGCGTAAACCGCCAGGTGGCCGATTCTGCTTGCACG
GCCACCGCCTATTTGGGCGGTGTGAAGGCGAACTATGGAACGATTGGCGT
TAACGCCAATGTGTCCAGGTACAGCTGTGATGGCGCCGCCAACGAGGAGG
ATCGGGTGCTCAGCATCGCGCATTGGGCACAGGCGGCTGGCAAGGATGCA
GGTCTGGTGACTACAGCCCGGGTAACTCATGCATCCCCAGCTGGTGTTTA
TGCCCACATCGCGGATCGCAATTGGGAGAACGACTGGGAGGTGGCCAACA
GGGAGTGCGATCCCGAGCAGACCATCGATATTGCCCGTCAGCTCGTGGAG
CAGCCTGTGGGTCAGCAGCTGAAGGTAATCCTTGGAGGCGGTCGCAAGAA
CTTCATCGACGCAACGGTAAATGATGAGGAGGGTTATCCCGGCAAGCGTA
CCGACGGTCGTCACTTAATCCGCAGTTGGTTGGATCAGAAGAAGGAGGCC
AATGTCTCAGCCAAATACGTGTGGAGTCGCAAGGGACTCAGTCTGGTGGA
TCTCGAGAATACGGACTACCTATTGGGTCTCTTTGCCAATGATCATCTGC
CGTACAACGGTGATCGGGACAGGAAACGTAGTCAGTTGGCGGATCCTTCG
CTGAGTGAGCTCACGGAGGCTGCCATCACGGTGTTGAGCCGCAATGACAA
GGGATTCTTTCTCTTCGTCGAGGGTGCTCGTATCGACATGGCCCACCACG
ATACCTTCGCCAAGAGATCCCTCGAGGATACCGCCGAGTTTGCGAGGGCT
GTCCAGAAGGCTCGCGAACTTACCTCCGAGGATGACACACTGATCGTGGT
GACCGCTGATCATGCTCATGTTATGTCCATCAATGGTTATCCTTATCGTG
ACCAGGAGATCACCGGATTGGCTCAACTGGCGGATGATAATCTGCCCTAT
ACGATTTTGTCCTATGCCAATGGACCTGGCTACTACTCCGGCTACAATCG
CGCTGAGGGACGTGCCCTTCTAAAGGAGAAGTTGGTTGCGGACTCAGACT
ATCAGTATCCCACGCTGGCGCCCTTGGACGCAGAAACCCACGGAGGAGAT
GATGTGGCGGTGTATGCCTCGGGACCCTATGCCCAGTACTTCAGTGGCAA
CTACGAGCAAAGCAATATTCCGGCGCTGATGGCCAGAGCAGCGGGTATCG
GGCCCTATGCCGCAAGCTTTCTAGACCAT
BO07796.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:24:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1809-RA | 1548 | CG1809-PA | 1..1545 | 17..1561 | 7725 | 100 | Plus |
CG8147-RA | 1641 | CG8147-PA | 399..488 | 355..444 | 225 | 83.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:24:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1809-RA | 1686 | CG1809-RA | 62..1606 | 17..1561 | 7725 | 100 | Plus |
CG8147-RA | 1862 | CG8147-RA | 486..575 | 355..444 | 225 | 83.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:23:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9562247..9563405 | 85..1243 | 5795 | 100 | Plus |
2R | 25286936 | 2R | 9563474..9563791 | 1244..1561 | 1590 | 100 | Plus |
2R | 25286936 | 2R | 9561699..9561768 | 17..86 | 350 | 100 | Plus |
3R | 32079331 | 3R | 9495347..9495436 | 355..444 | 225 | 83.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:24:01 has no hits.
BO07796.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:45 Download gff for
BO07796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1809-RA | 1..1548 | 17..1562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:22 Download gff for
BO07796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1809-RA | 51..1603 | 17..1570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:18 Download gff for
BO07796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1809-RA | 62..1606 | 17..1563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:45 Download gff for
BO07796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1809-RA | 51..1603 | 17..1570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:46 Download gff for
BO07796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1809-RA | 62..1606 | 17..1563 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:46 Download gff for
BO07796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9561699..9561768 | 17..86 | 100 | -> | Plus |
2R | 9562249..9563405 | 87..1243 | 100 | -> | Plus |
2R | 9563474..9563791 | 1244..1563 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:18 Download gff for
BO07796.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5449204..5449273 | 17..86 | 100 | -> | Plus |
arm_2R | 5449754..5450910 | 87..1243 | 100 | -> | Plus |
arm_2R | 5450979..5451296 | 1244..1563 | 99 | | Plus |
BO07796.pep Sequence
Translation from 16 to 1579
> BO07796.pep
MARRFILLLVLAVCLSGSASGQRDHPRGRSFDAESHPIKYAEEQQTQYWV
DKAQAKLLSKLAEQESATTNKAKNVILFLGDGMSVHTVTATRNLLGDSAE
QVYFEGFPYTGLSKTYCVNRQVADSACTATAYLGGVKANYGTIGVNANVS
RYSCDGAANEEDRVLSIAHWAQAAGKDAGLVTTARVTHASPAGVYAHIAD
RNWENDWEVANRECDPEQTIDIARQLVEQPVGQQLKVILGGGRKNFIDAT
VNDEEGYPGKRTDGRHLIRSWLDQKKEANVSAKYVWSRKGLSLVDLENTD
YLLGLFANDHLPYNGDRDRKRSQLADPSLSELTEAAITVLSRNDKGFFLF
VEGARIDMAHHDTFAKRSLEDTAEFARAVQKARELTSEDDTLIVVTADHA
HVMSINGYPYRDQEITGLAQLADDNLPYTILSYANGPGYYSGYNRAEGRA
LLKEKLVADSDYQYPTLAPLDAETHGGDDVAVYASGPYAQYFSGNYEQSN
IPALMARAAGIGPYAASFLDH
BO07796.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1809-PA | 515 | CG1809-PA | 1..515 | 1..515 | 2679 | 100 | Plus |
CG10592-PA | 524 | CG10592-PA | 11..517 | 5..515 | 1488 | 57.9 | Plus |
CG8147-PA | 546 | CG8147-PA | 1..528 | 1..509 | 1187 | 49.4 | Plus |
CG5656-PA | 523 | CG5656-PA | 3..508 | 2..513 | 1101 | 47.8 | Plus |
CG10827-PA | 522 | CG10827-PA | 57..515 | 43..512 | 1093 | 50.1 | Plus |