Clone BO07801 Report

Search the DGRC for BO07801

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:78
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptCG31358-RA
Protein status:BO07801.pep: validated full length
Sequenced Size:1456

Clone Sequence Records

BO07801.3prime Sequence

863 bp (780 high quality bases) assembled on 2006-01-06

> BO07801.3prime
ATGGTCTAGAAAGCTTGCAAAGTAATAATTTTTGTCGGCCTTTGATACTT
TTGGATCCTTTTCTGGCGGAGTCGATGTGGACTTTGGAGGCGGTATGGGC
CGTTCCGGAATGGGTGGTAGAGTTGGGTGTGGAGGAATTGGAGGAAGTGT
CGGGTGAGGCGGCACCGGGGGCAGTGAGGGATGATCAGGACGCGGAGGAA
TGGGAATGGATGAAGGCTTAGTAGGAGAACTCGAACGTGCTGGGGGCTTG
GTCAGAAGTGGATAGGGTTCGATTGCATCATCGGTTCGATTGGATCTAGG
CGACGGCTGACCACTTTGCGGGCGAACTCTTCGACTGCTAGTTGGTTGTT
CACCATCCTGGGCAGATCGAGAGGGTCTGAAAAATGGTGGCCATAGCCAC
GAACGCGCCGGTTTGTTTTCTTCCACACTCTCAGTGGTTTTTCCAACTTC
GGGTTTTTCAGTTGTGCTATCTGTTTGGGCATCATTAAAGAAATCAGGTG
GTGTACCCGAGATGTAAACTTTTGGTGAAAATAAATGTAAATAATCGTAA
TCGTCATCGCTATCCCTCCGGTCATCATCATCTTGTGCTGCATCCGACGA
ATCCTTTCCATCCATAAAAGGTGCCATAATTTCCAAGGGTATGGGGAAAA
GTACATTAACCCGACGTTCCGATGCCATGGAACAGAGAATCTGCAGATGC
CTTAGTTGTAGGGTAATTTGGTTTTCCGACATAACATCTGAGCATTCTTT
TAAAGCCTTCGAGGCTTTAGCCTCTCCTTCTGCCAAAATGATCTTGGCCC
TGGCCTCCCTTGTCGCCTCCGCTTCGCTTGGCCATGATCGCTCCAGACTA
CTTGGCAAGGATA

BO07801.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG31358-PA 1425 CG31358-RA 578..1422 863..19 4125 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:58:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG42505-RA 3446 CG42505-RA 634..1478 863..19 4165 99.6 Minus
CG42504-RA 3446 CG42504-RA 634..1478 863..19 4165 99.6 Minus
CG31358-RB 1979 CG31358-RB 634..1478 863..19 4165 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12030038..12030724 19..705 3420 99.9 Plus
3R 32079331 3R 12030784..12030945 702..863 750 97.5 Plus
Blast to na_te.dros performed 2015-02-11 02:58:23
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy7 5486 gypsy7 GYPSY7 5486bp 1750..1789 108..147 110 75 Plus

BO07801.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:31 Download gff for BO07801.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31358-PA 579..1425 15..862 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:17 Download gff for BO07801.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31358-PA 579..1425 15..862 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:23:26 Download gff for BO07801.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31358-RB 635..1487 9..862 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:24:01 Download gff for BO07801.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31358-RB 635..1487 9..862 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:24:01 Download gff for BO07801.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12030788..12030944 706..862 98   Plus
3R 12030029..12030724 9..705 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:23:26 Download gff for BO07801.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7855751..7856446 9..705 99 <- Plus
arm_3R 7856510..7856666 706..862 98   Plus

BO07801.5prime Sequence

940 bp (728 high quality bases) assembled on 2006-01-06

> BO07801.5prime
GAAGTTATCAGTCGACATGAGGGAGCGATATGCAGTCGAAACAGAGAAGC
AAGATAATGTGGAACCCACCCCGGAAGATGATAACAGCAATTATATCGTT
GAAAAAGTAGCGGTGTTCGTATCATGGATTTTAGTGTTGATTTTACTTCC
ATTTTCGCTGTGTTGTTGTCTGACTATAGCCTACGAATTCCATCGACTTG
TGATATTTCGATTGGGTCGTATTAGGAGTTGCTTAGGACCAGGTTTAGTT
TTTCTTCTTCCCTGCATCGATTCGTTTAATACGGTGGACATTCGCACCGA
TGTGGTTAATGTGGATCCGCAGGAGATGCTCACCAAGGATTCGGTGTCGA
TTACAGTGAACGCAGTGGTGTTCTACTGCATCTACGATCCCATCAACTCG
ATCATCAAGGTGGACGATGCCAGGGATGCCACCGAAAGGATCTCACAGGT
CACCCTGCGAAACATTGTTGGTTCGAAAGGACTCCACGAACTTCTGGCAT
CCAGGCAGCAACTTTCCCTGGAAATCCAGCAGGCAGTTGCAAAGATCACA
GAACGTTGGGGCGTGCGAGTGGAACGAGTGGACTTGATGGAGATATCCTT
GCCAAGTAGTCTGGAGCGATCATTGGCCAGCGAAGCGGAGGCGACAAGGG
AGGCCAGGGCCAAGATCATTTTGGCAGAAGGAGAGGCTAAAGCCTCGAAG
GCTTTAAAAGAATGCTCAGATGTTATGTCGGAAAACCAAATTACCCTACA
ACTAAGGCATCTGCAGATTCTCTGTTCCATGGCATCGGAACGTCGGGTTA
ATGTACTTTTCCCCATACCCTTGGAAATTATGGCACCTTTTATGGATGGA
AAGGATTCGTCGGATGCAGCACAAGATGATGATGACCGGAGGGATAGCGA
TGACGATTACGATTATTTACATTTATTTTCACCAAAAGTT

BO07801.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG31358-PA 1425 CG31358-RA 1..924 17..940 4620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG42505-RA 3446 CG42505-RA 57..980 17..940 4620 100 Plus
CG42504-RA 3446 CG42504-RA 57..980 17..940 4620 100 Plus
CG31358-RB 1979 CG31358-RB 57..980 17..940 4620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12031008..12031370 586..224 1815 100 Minus
3R 32079331 3R 12030536..12030724 940..752 945 100 Minus
3R 32079331 3R 12030784..12030953 755..586 835 99.4 Minus
3R 32079331 3R 12031424..12031570 226..80 735 100 Minus
3R 32079331 3R 12031634..12031701 84..17 325 98.5 Minus
3R 32079331 3R 12041098..12041363 317..582 265 73.3 Plus
3R 32079331 3R 12041461..12041609 602..750 205 75.8 Plus
Blast to na_te.dros performed on 2015-02-13 05:36:21 has no hits.

BO07801.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:32 Download gff for BO07801.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31358-PA 1..924 17..940 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:18 Download gff for BO07801.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31358-PA 1..924 17..940 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:05:03 Download gff for BO07801.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31358-RB 54..980 11..940 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:50:29 Download gff for BO07801.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31358-RB 54..980 11..940 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:50:29 Download gff for BO07801.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12030536..12030724 752..940 100 <- Minus
3R 12030788..12030953 586..751 100 <- Minus
3R 12031009..12031368 226..585 100 <- Minus
3R 12031425..12031569 81..225 100 <- Minus
3R 12031638..12031704 11..80 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:05:03 Download gff for BO07801.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7856258..7856446 752..940 100 <- Minus
arm_3R 7856510..7856675 586..751 100 <- Minus
arm_3R 7856731..7857090 226..585 100 <- Minus
arm_3R 7857147..7857291 81..225 100 <- Minus
arm_3R 7857360..7857426 11..80 95   Minus

BO07801.complete Sequence

1456 bp (1456 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630935

> BO07801.complete
GAAGTTATCAGTCGACATGAGGGAGCGATATGCAGTCGAAACAGAGAAGC
AAGATAATGTGGAACCCACCCCGGAAGATGATAACAGCAATTATATCGTT
GAAAAAGTAGCGGTGTTCGTATCATGGATTTTAGTGTTGATTTTACTTCC
ATTTTCGCTGTGTTGTTGTCTGACTATAGCCTACGAATTCCATCGACTTG
TGATATTTCGATTGGGTCGTATTAGGAGTTGCTTAGGACCAGGTTTAGTT
TTTCTTCTTCCCTGCATCGATTCGTTTAATACGGTGGACATTCGCACCGA
TGTGGTTAATGTGGATCCGCAGGAGATGCTCACCAAGGATTCGGTGTCGA
TTACAGTGAACGCAGTGGTGTTCTACTGCATCTACGATCCCATCAACTCG
ATCATCAAGGTGGACGATGCCAGGGATGCCACCGAAAGGATCTCACAGGT
CACCCTGCGAAACATTGTTGGTTCGAAAGGACTCCACGAACTTCTGGCAT
CCAGGCAGCAACTTTCCCTGGAAATCCAGCAGGCAGTTGCAAAGATCACA
GAACGTTGGGGCGTGCGAGTGGAACGAGTGGACTTGATGGAGATATCCTT
GCCAAGTAGTCTGGAGCGATCATTGGCCAGCGAAGCGGAGGCGACAAGGG
AGGCCAGGGCCAAGATCATTTTGGCAGAAGGAGAGGCTAAAGCCTCGAAG
GCTTTAAAAGAATGCTCAGATGTTATGTCGGAAAACCAAATTACCCTACA
ACTAAGGCATCTGCAGATTCTCTGTTCCATGGCATCGGAACGTCGGGTTA
ATGTACTTTTCCCCATACCCTTGGAAATTATGGCACCTTTTATGGATGGA
AAGGATTCGTCGGATGCAGCACAAGATGATGATGACCGGAGGGATAGCGA
TGACGATTACGATTATTTACATTTATTTTCACCAAAAGTTTACATCTCGG
GTACACCACCTGATTTCTTTAATGATGCCCAAACAGATAGCACAACTGAA
AAACCCGAAGTTGGAAAAACCACTGAGAGTGTGGAAGAAAACAAACCGGC
GCGTTCGTGGCTATGGCCACCATTTTTCAGACCCTCTCGATCTGCCCAGG
ATGGTGAACAACCAACTAGCAGTCGAAGAGTTCGCCCGCAAAGTGGTCAG
CCGTCGCCTAGATCCAATCGAACCGATGATGCAATCGAACCCTATCCACT
TCTGACCAAGCCCCCAGCACGTTCGAGTTCTCCTACTAAGCCTTCATCCA
TTCCCATTCCTCCGCGTCCTGATCATCCCTCACTGCCCCCGGTGCCGCCT
CACCCGACACTTCCTCCAATTCCTCCACACCCAACTCTACCACCCATTCC
GGAACGGCCCATACCGCCTCCAAAGTCCACATCGACTCCGCCAGAAAAGG
ATCCAAAAGTATCAAAGGCCGACAAAAATTATTACTTTGCAAGCTTTCTA
GACCAT

BO07801.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG31358-RB 1425 CG31358-PB 1..1422 17..1438 7095 99.9 Plus
CG31358-RA 1425 CG31358-PA 1..1422 17..1438 7095 99.9 Plus
CG14736-RG 1422 CG14736-PG 388..839 317..768 505 74.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG42505-RA 3446 CG42505-RA 57..1478 17..1438 7095 99.9 Plus
CG42504-RA 3446 CG42504-RA 57..1478 17..1438 7095 99.9 Plus
CG31358-RB 1979 CG31358-RB 57..1478 17..1438 7095 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12030038..12030724 1438..752 3420 99.9 Minus
3R 32079331 3R 12031008..12031370 586..224 1815 100 Minus
3R 32079331 3R 12030784..12030953 755..586 835 99.4 Minus
3R 32079331 3R 12031424..12031570 226..80 735 100 Minus
3R 32079331 3R 12031634..12031701 84..17 325 98.5 Minus
3R 32079331 3R 12041098..12041363 317..582 265 73.3 Plus
3R 32079331 3R 12041461..12041609 602..750 205 75.8 Plus
Blast to na_te.dros performed on 2014-11-27 07:39:32 has no hits.

BO07801.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:46 Download gff for BO07801.complete
Subject Subject Range Query Range Percent Splice Strand
CG31358-RA 1..1425 17..1442 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:24 Download gff for BO07801.complete
Subject Subject Range Query Range Percent Splice Strand
CG31358-RA 28..1461 11..1448 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:05 Download gff for BO07801.complete
Subject Subject Range Query Range Percent Splice Strand
CG31358-RB 57..1478 17..1440 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:46 Download gff for BO07801.complete
Subject Subject Range Query Range Percent Splice Strand
CG31358-RA 28..1461 11..1448 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:24 Download gff for BO07801.complete
Subject Subject Range Query Range Percent Splice Strand
CG31358-RB 57..1478 17..1440 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:24 Download gff for BO07801.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12030036..12030724 752..1440 99 <- Minus
3R 12030788..12030953 586..751 100 <- Minus
3R 12031009..12031368 226..585 100 <- Minus
3R 12031425..12031569 81..225 100 <- Minus
3R 12031638..12031701 17..80 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:05 Download gff for BO07801.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7855758..7856446 752..1440 99 <- Minus
arm_3R 7856510..7856675 586..751 100 <- Minus
arm_3R 7856731..7857090 226..585 100 <- Minus
arm_3R 7857147..7857291 81..225 100 <- Minus
arm_3R 7857360..7857423 17..80 100   Minus

BO07801.pep Sequence

Translation from 16 to 1456

> BO07801.pep
MRERYAVETEKQDNVEPTPEDDNSNYIVEKVAVFVSWILVLILLPFSLCC
CLTIAYEFHRLVIFRLGRIRSCLGPGLVFLLPCIDSFNTVDIRTDVVNVD
PQEMLTKDSVSITVNAVVFYCIYDPINSIIKVDDARDATERISQVTLRNI
VGSKGLHELLASRQQLSLEIQQAVAKITERWGVRVERVDLMEISLPSSLE
RSLASEAEATREARAKIILAEGEAKASKALKECSDVMSENQITLQLRHLQ
ILCSMASERRVNVLFPIPLEIMAPFMDGKDSSDAAQDDDDRRDSDDDYDY
LHLFSPKVYISGTPPDFFNDAQTDSTTEKPEVGKTTESVEENKPARSWLW
PPFFRPSRSAQDGEQPTSSRRVRPQSGQPSPRSNRTDDAIEPYPLLTKPP
ARSSSPTKPSSIPIPPRPDHPSLPPVPPHPTLPPIPPHPTLPPIPERPIP
PPKSTSTPPEKDPKVSKADKNYYFASFLDH

BO07801.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG31358-PB 474 CG31358-PB 1..474 1..474 2476 100 Plus
CG31358-PA 474 CG31358-PA 1..474 1..474 2476 100 Plus
CG14736-PD 455 CG14736-PD 49..309 21..280 960 73.6 Plus
CG14736-PG 473 CG14736-PG 49..309 21..280 960 73.6 Plus
CG14736-PE 473 CG14736-PE 49..309 21..280 960 73.6 Plus