Clone Sequence Records
BO07801.3prime Sequence
863 bp (780 high quality bases) assembled on 2006-01-06
> BO07801.3prime
ATGGTCTAGAAAGCTTGCAAAGTAATAATTTTTGTCGGCCTTTGATACTT
TTGGATCCTTTTCTGGCGGAGTCGATGTGGACTTTGGAGGCGGTATGGGC
CGTTCCGGAATGGGTGGTAGAGTTGGGTGTGGAGGAATTGGAGGAAGTGT
CGGGTGAGGCGGCACCGGGGGCAGTGAGGGATGATCAGGACGCGGAGGAA
TGGGAATGGATGAAGGCTTAGTAGGAGAACTCGAACGTGCTGGGGGCTTG
GTCAGAAGTGGATAGGGTTCGATTGCATCATCGGTTCGATTGGATCTAGG
CGACGGCTGACCACTTTGCGGGCGAACTCTTCGACTGCTAGTTGGTTGTT
CACCATCCTGGGCAGATCGAGAGGGTCTGAAAAATGGTGGCCATAGCCAC
GAACGCGCCGGTTTGTTTTCTTCCACACTCTCAGTGGTTTTTCCAACTTC
GGGTTTTTCAGTTGTGCTATCTGTTTGGGCATCATTAAAGAAATCAGGTG
GTGTACCCGAGATGTAAACTTTTGGTGAAAATAAATGTAAATAATCGTAA
TCGTCATCGCTATCCCTCCGGTCATCATCATCTTGTGCTGCATCCGACGA
ATCCTTTCCATCCATAAAAGGTGCCATAATTTCCAAGGGTATGGGGAAAA
GTACATTAACCCGACGTTCCGATGCCATGGAACAGAGAATCTGCAGATGC
CTTAGTTGTAGGGTAATTTGGTTTTCCGACATAACATCTGAGCATTCTTT
TAAAGCCTTCGAGGCTTTAGCCTCTCCTTCTGCCAAAATGATCTTGGCCC
TGGCCTCCCTTGTCGCCTCCGCTTCGCTTGGCCATGATCGCTCCAGACTA
CTTGGCAAGGATA
BO07801.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31358-PA | 1425 | CG31358-RA | 578..1422 | 863..19 | 4125 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:58:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42505-RA | 3446 | CG42505-RA | 634..1478 | 863..19 | 4165 | 99.6 | Minus |
CG42504-RA | 3446 | CG42504-RA | 634..1478 | 863..19 | 4165 | 99.6 | Minus |
CG31358-RB | 1979 | CG31358-RB | 634..1478 | 863..19 | 4165 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:58:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12030038..12030724 | 19..705 | 3420 | 99.9 | Plus |
3R | 32079331 | 3R | 12030784..12030945 | 702..863 | 750 | 97.5 | Plus |
Blast to na_te.dros performed 2015-02-11 02:58:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy7 | 5486 | gypsy7 GYPSY7 5486bp | 1750..1789 | 108..147 | 110 | 75 | Plus |
BO07801.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:31 Download gff for
BO07801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31358-PA | 579..1425 | 15..862 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:17 Download gff for
BO07801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31358-PA | 579..1425 | 15..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:23:26 Download gff for
BO07801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31358-RB | 635..1487 | 9..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:24:01 Download gff for
BO07801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31358-RB | 635..1487 | 9..862 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:24:01 Download gff for
BO07801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12030788..12030944 | 706..862 | 98 | | Plus |
3R | 12030029..12030724 | 9..705 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:23:26 Download gff for
BO07801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7855751..7856446 | 9..705 | 99 | <- | Plus |
arm_3R | 7856510..7856666 | 706..862 | 98 | | Plus |
BO07801.5prime Sequence
940 bp (728 high quality bases) assembled on 2006-01-06
> BO07801.5prime
GAAGTTATCAGTCGACATGAGGGAGCGATATGCAGTCGAAACAGAGAAGC
AAGATAATGTGGAACCCACCCCGGAAGATGATAACAGCAATTATATCGTT
GAAAAAGTAGCGGTGTTCGTATCATGGATTTTAGTGTTGATTTTACTTCC
ATTTTCGCTGTGTTGTTGTCTGACTATAGCCTACGAATTCCATCGACTTG
TGATATTTCGATTGGGTCGTATTAGGAGTTGCTTAGGACCAGGTTTAGTT
TTTCTTCTTCCCTGCATCGATTCGTTTAATACGGTGGACATTCGCACCGA
TGTGGTTAATGTGGATCCGCAGGAGATGCTCACCAAGGATTCGGTGTCGA
TTACAGTGAACGCAGTGGTGTTCTACTGCATCTACGATCCCATCAACTCG
ATCATCAAGGTGGACGATGCCAGGGATGCCACCGAAAGGATCTCACAGGT
CACCCTGCGAAACATTGTTGGTTCGAAAGGACTCCACGAACTTCTGGCAT
CCAGGCAGCAACTTTCCCTGGAAATCCAGCAGGCAGTTGCAAAGATCACA
GAACGTTGGGGCGTGCGAGTGGAACGAGTGGACTTGATGGAGATATCCTT
GCCAAGTAGTCTGGAGCGATCATTGGCCAGCGAAGCGGAGGCGACAAGGG
AGGCCAGGGCCAAGATCATTTTGGCAGAAGGAGAGGCTAAAGCCTCGAAG
GCTTTAAAAGAATGCTCAGATGTTATGTCGGAAAACCAAATTACCCTACA
ACTAAGGCATCTGCAGATTCTCTGTTCCATGGCATCGGAACGTCGGGTTA
ATGTACTTTTCCCCATACCCTTGGAAATTATGGCACCTTTTATGGATGGA
AAGGATTCGTCGGATGCAGCACAAGATGATGATGACCGGAGGGATAGCGA
TGACGATTACGATTATTTACATTTATTTTCACCAAAAGTT
BO07801.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31358-PA | 1425 | CG31358-RA | 1..924 | 17..940 | 4620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:36:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42505-RA | 3446 | CG42505-RA | 57..980 | 17..940 | 4620 | 100 | Plus |
CG42504-RA | 3446 | CG42504-RA | 57..980 | 17..940 | 4620 | 100 | Plus |
CG31358-RB | 1979 | CG31358-RB | 57..980 | 17..940 | 4620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:36:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12031008..12031370 | 586..224 | 1815 | 100 | Minus |
3R | 32079331 | 3R | 12030536..12030724 | 940..752 | 945 | 100 | Minus |
3R | 32079331 | 3R | 12030784..12030953 | 755..586 | 835 | 99.4 | Minus |
3R | 32079331 | 3R | 12031424..12031570 | 226..80 | 735 | 100 | Minus |
3R | 32079331 | 3R | 12031634..12031701 | 84..17 | 325 | 98.5 | Minus |
3R | 32079331 | 3R | 12041098..12041363 | 317..582 | 265 | 73.3 | Plus |
3R | 32079331 | 3R | 12041461..12041609 | 602..750 | 205 | 75.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:36:21 has no hits.
BO07801.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:32 Download gff for
BO07801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31358-PA | 1..924 | 17..940 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:18 Download gff for
BO07801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31358-PA | 1..924 | 17..940 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:05:03 Download gff for
BO07801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31358-RB | 54..980 | 11..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:50:29 Download gff for
BO07801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31358-RB | 54..980 | 11..940 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:50:29 Download gff for
BO07801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12030536..12030724 | 752..940 | 100 | <- | Minus |
3R | 12030788..12030953 | 586..751 | 100 | <- | Minus |
3R | 12031009..12031368 | 226..585 | 100 | <- | Minus |
3R | 12031425..12031569 | 81..225 | 100 | <- | Minus |
3R | 12031638..12031704 | 11..80 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:05:03 Download gff for
BO07801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7856258..7856446 | 752..940 | 100 | <- | Minus |
arm_3R | 7856510..7856675 | 586..751 | 100 | <- | Minus |
arm_3R | 7856731..7857090 | 226..585 | 100 | <- | Minus |
arm_3R | 7857147..7857291 | 81..225 | 100 | <- | Minus |
arm_3R | 7857360..7857426 | 11..80 | 95 | | Minus |
BO07801.complete Sequence
1456 bp (1456 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630935
> BO07801.complete
GAAGTTATCAGTCGACATGAGGGAGCGATATGCAGTCGAAACAGAGAAGC
AAGATAATGTGGAACCCACCCCGGAAGATGATAACAGCAATTATATCGTT
GAAAAAGTAGCGGTGTTCGTATCATGGATTTTAGTGTTGATTTTACTTCC
ATTTTCGCTGTGTTGTTGTCTGACTATAGCCTACGAATTCCATCGACTTG
TGATATTTCGATTGGGTCGTATTAGGAGTTGCTTAGGACCAGGTTTAGTT
TTTCTTCTTCCCTGCATCGATTCGTTTAATACGGTGGACATTCGCACCGA
TGTGGTTAATGTGGATCCGCAGGAGATGCTCACCAAGGATTCGGTGTCGA
TTACAGTGAACGCAGTGGTGTTCTACTGCATCTACGATCCCATCAACTCG
ATCATCAAGGTGGACGATGCCAGGGATGCCACCGAAAGGATCTCACAGGT
CACCCTGCGAAACATTGTTGGTTCGAAAGGACTCCACGAACTTCTGGCAT
CCAGGCAGCAACTTTCCCTGGAAATCCAGCAGGCAGTTGCAAAGATCACA
GAACGTTGGGGCGTGCGAGTGGAACGAGTGGACTTGATGGAGATATCCTT
GCCAAGTAGTCTGGAGCGATCATTGGCCAGCGAAGCGGAGGCGACAAGGG
AGGCCAGGGCCAAGATCATTTTGGCAGAAGGAGAGGCTAAAGCCTCGAAG
GCTTTAAAAGAATGCTCAGATGTTATGTCGGAAAACCAAATTACCCTACA
ACTAAGGCATCTGCAGATTCTCTGTTCCATGGCATCGGAACGTCGGGTTA
ATGTACTTTTCCCCATACCCTTGGAAATTATGGCACCTTTTATGGATGGA
AAGGATTCGTCGGATGCAGCACAAGATGATGATGACCGGAGGGATAGCGA
TGACGATTACGATTATTTACATTTATTTTCACCAAAAGTTTACATCTCGG
GTACACCACCTGATTTCTTTAATGATGCCCAAACAGATAGCACAACTGAA
AAACCCGAAGTTGGAAAAACCACTGAGAGTGTGGAAGAAAACAAACCGGC
GCGTTCGTGGCTATGGCCACCATTTTTCAGACCCTCTCGATCTGCCCAGG
ATGGTGAACAACCAACTAGCAGTCGAAGAGTTCGCCCGCAAAGTGGTCAG
CCGTCGCCTAGATCCAATCGAACCGATGATGCAATCGAACCCTATCCACT
TCTGACCAAGCCCCCAGCACGTTCGAGTTCTCCTACTAAGCCTTCATCCA
TTCCCATTCCTCCGCGTCCTGATCATCCCTCACTGCCCCCGGTGCCGCCT
CACCCGACACTTCCTCCAATTCCTCCACACCCAACTCTACCACCCATTCC
GGAACGGCCCATACCGCCTCCAAAGTCCACATCGACTCCGCCAGAAAAGG
ATCCAAAAGTATCAAAGGCCGACAAAAATTATTACTTTGCAAGCTTTCTA
GACCAT
BO07801.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:39:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31358-RB | 1425 | CG31358-PB | 1..1422 | 17..1438 | 7095 | 99.9 | Plus |
CG31358-RA | 1425 | CG31358-PA | 1..1422 | 17..1438 | 7095 | 99.9 | Plus |
CG14736-RG | 1422 | CG14736-PG | 388..839 | 317..768 | 505 | 74.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:39:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42505-RA | 3446 | CG42505-RA | 57..1478 | 17..1438 | 7095 | 99.9 | Plus |
CG42504-RA | 3446 | CG42504-RA | 57..1478 | 17..1438 | 7095 | 99.9 | Plus |
CG31358-RB | 1979 | CG31358-RB | 57..1478 | 17..1438 | 7095 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:39:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12030038..12030724 | 1438..752 | 3420 | 99.9 | Minus |
3R | 32079331 | 3R | 12031008..12031370 | 586..224 | 1815 | 100 | Minus |
3R | 32079331 | 3R | 12030784..12030953 | 755..586 | 835 | 99.4 | Minus |
3R | 32079331 | 3R | 12031424..12031570 | 226..80 | 735 | 100 | Minus |
3R | 32079331 | 3R | 12031634..12031701 | 84..17 | 325 | 98.5 | Minus |
3R | 32079331 | 3R | 12041098..12041363 | 317..582 | 265 | 73.3 | Plus |
3R | 32079331 | 3R | 12041461..12041609 | 602..750 | 205 | 75.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:39:32 has no hits.
BO07801.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:46 Download gff for
BO07801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31358-RA | 1..1425 | 17..1442 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:24 Download gff for
BO07801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31358-RA | 28..1461 | 11..1448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:05 Download gff for
BO07801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31358-RB | 57..1478 | 17..1440 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:46 Download gff for
BO07801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31358-RA | 28..1461 | 11..1448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:24 Download gff for
BO07801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31358-RB | 57..1478 | 17..1440 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:24 Download gff for
BO07801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12030036..12030724 | 752..1440 | 99 | <- | Minus |
3R | 12030788..12030953 | 586..751 | 100 | <- | Minus |
3R | 12031009..12031368 | 226..585 | 100 | <- | Minus |
3R | 12031425..12031569 | 81..225 | 100 | <- | Minus |
3R | 12031638..12031701 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:05 Download gff for
BO07801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7855758..7856446 | 752..1440 | 99 | <- | Minus |
arm_3R | 7856510..7856675 | 586..751 | 100 | <- | Minus |
arm_3R | 7856731..7857090 | 226..585 | 100 | <- | Minus |
arm_3R | 7857147..7857291 | 81..225 | 100 | <- | Minus |
arm_3R | 7857360..7857423 | 17..80 | 100 | | Minus |
BO07801.pep Sequence
Translation from 16 to 1456
> BO07801.pep
MRERYAVETEKQDNVEPTPEDDNSNYIVEKVAVFVSWILVLILLPFSLCC
CLTIAYEFHRLVIFRLGRIRSCLGPGLVFLLPCIDSFNTVDIRTDVVNVD
PQEMLTKDSVSITVNAVVFYCIYDPINSIIKVDDARDATERISQVTLRNI
VGSKGLHELLASRQQLSLEIQQAVAKITERWGVRVERVDLMEISLPSSLE
RSLASEAEATREARAKIILAEGEAKASKALKECSDVMSENQITLQLRHLQ
ILCSMASERRVNVLFPIPLEIMAPFMDGKDSSDAAQDDDDRRDSDDDYDY
LHLFSPKVYISGTPPDFFNDAQTDSTTEKPEVGKTTESVEENKPARSWLW
PPFFRPSRSAQDGEQPTSSRRVRPQSGQPSPRSNRTDDAIEPYPLLTKPP
ARSSSPTKPSSIPIPPRPDHPSLPPVPPHPTLPPIPPHPTLPPIPERPIP
PPKSTSTPPEKDPKVSKADKNYYFASFLDH
BO07801.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31358-PB | 474 | CG31358-PB | 1..474 | 1..474 | 2476 | 100 | Plus |
CG31358-PA | 474 | CG31358-PA | 1..474 | 1..474 | 2476 | 100 | Plus |
CG14736-PD | 455 | CG14736-PD | 49..309 | 21..280 | 960 | 73.6 | Plus |
CG14736-PG | 473 | CG14736-PG | 49..309 | 21..280 | 960 | 73.6 | Plus |
CG14736-PE | 473 | CG14736-PE | 49..309 | 21..280 | 960 | 73.6 | Plus |