Clone Sequence Records
BO07802.3prime Sequence
998 bp (893 high quality bases) assembled on 2006-01-06
> BO07802.3prime
ATGGTCTAGAAAGCTTGCCTCGCAGGCTATTTTGCCATCGAAACTACTGA
GGGCAATGGCGAATGCCTGCATGGCGCACAGGGGATAGCGATAGTCCATG
GTGAAGACGTCCTCCGAGGTGCGGCCGAACTGCATTACTATGTACTCCGG
ATCGGAGTCGTGGACCAACTGAAAGTTCTTCACCGACGCCTGGGTGACGC
GCCCATGAAAGTTGAGCACATACGATTGGGTTTCATCGTTCCACACTGGC
GTCTTATTGTGCAGCTCCACGATGTTGTCCATGTTCTTCATTTTCCATAG
GTCAAGGATGCCCTGCTGTTTGGGATCCGCCGAACTGATCTTGACACGCT
GATCGTCCTCAGTCATGCCGGGCAGTATAACAGTCATGTTGCGTGGCCCC
TTGAATCCCAAAATGTTGGTGTCATAAATGATGACGGCCAAGTCGAGTCG
AGGACTCTCTGTGCTCTCCTTGTTGCCGTTGTCAAAGACCGTGAAGGATG
TGCCAAAGACATTAGAGCGCAGTTTGCCACAGAAGCCATCGGCATTGCGA
GACAAATCCGTGGGATCGCAGCTGACAATGTAGTTGGATGTCTTGCTCTT
CTTGCGTTTGCGACCTCCCAGCAGAAATATCTTCTTGCCGTAGTCACGTT
CCAGATGCAAGTAGTAGATGGGAAAGAGGCCGCGGTCCATGCCCTTCCTG
TCCCGCGTAATGCGGCACTTGTAGAGCACTCCCTGTGGCGCTGGTTGCAT
CACGAACTGGTCGATATTGCCGATGACATCTCCCTCGGACTCGCCGCCAG
TTCCGTTCCCCGTCCCGTTGCTGCTGCCGTCCAGCGTTGCGTCCTTGTAC
GGCGATGAGGCCATGCCGGCGGGACGCACTGGAGCAGCACCGGCCACATT
GCGATTGGTGTAGTCATCCTCGTCCAGATTGTCGCTAAAGGAATGCTGGC
GGGCACGTGGTTTCTGCGATTGCGTCGAGTTGGCGCTGTGCGAGGCTG
BO07802.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9398-PA | 1332 | king-tubby-RA | 350..1329 | 998..19 | 4900 | 100 | Minus |
CG9398-PB | 1383 | king-tubby-RB | 401..1380 | 998..19 | 4900 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:03:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ktub-RC | 2523 | CG9398-RC | 1076..2055 | 998..19 | 4900 | 100 | Minus |
ktub-RB | 2496 | CG9398-RB | 1049..2028 | 998..19 | 4900 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:03:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21122085..21122470 | 998..613 | 1930 | 100 | Minus |
2R | 25286936 | 2R | 21122968..21123236 | 287..19 | 1345 | 100 | Minus |
2R | 25286936 | 2R | 21122524..21122717 | 616..423 | 970 | 100 | Minus |
2R | 25286936 | 2R | 21122774..21122911 | 423..286 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:03:27 has no hits.
BO07802.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:33 Download gff for
BO07802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9398-PA | 350..1332 | 16..998 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:19 Download gff for
BO07802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9398-PB | 401..1383 | 16..998 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:08:55 Download gff for
BO07802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ktub-RB | 1049..2038 | 8..998 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:34:03 Download gff for
BO07802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ktub-RB | 1049..2038 | 8..998 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:34:03 Download gff for
BO07802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21122970..21123246 | 8..285 | 98 | | Minus |
2R | 21122085..21122468 | 615..998 | 100 | -> | Minus |
2R | 21122526..21122716 | 424..614 | 100 | -> | Minus |
2R | 21122774..21122911 | 286..423 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:08:55 Download gff for
BO07802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17009590..17009973 | 615..998 | 100 | -> | Minus |
arm_2R | 17010031..17010221 | 424..614 | 100 | -> | Minus |
arm_2R | 17010279..17010416 | 286..423 | 100 | -> | Minus |
arm_2R | 17010475..17010751 | 8..285 | 98 | | Minus |
BO07802.5prime Sequence
880 bp (753 high quality bases) assembled on 2006-01-06
> BO07802.5prime
GAAGTTATCAGTCGACATGGAGGCCTACATCCGGCAGAAGAGAGCCTCGC
CGGGAATGGTCCAGGCCAGCGATTTGCAGATCAATCGACCCATGTCCGGG
ATGCGCAGCAACAGCCGGGAGCTGCACGCCTACGACGGACCCATGCAGTT
CATCAGTTCGCCCCAAAATCCGGACCAGATACTCACCAACGGCAGTCCCG
GCGGCATCAATCCGGTTGCCATGAACACGAGTCGCAATCACTCGAATAAC
ATGCGCAGCCTAAGCACCATCAACCAGGAGGCTGATCTCATAGAGGAGAT
CTCATCGCACGAGTTGGAGGACGAGGAGAGCAGTCCGGTGACGGTGATTG
AGCAGCACCAGCAGTCAGCCTCGCACAGCGCCAACTCGACGCAATCGCAG
AAACCACGTGCCCGCCAGCATTCCTTTAGCGACAATCTGGACGAGGATGA
CTACACCAATCGCAATGTGGCCGGTGCTGCTCCAGTGCGTCCCGCCGGCA
TGGCCTCATCGCCGTACAAGGACGCAACGCTGGACGGCAGCAGCAACGGG
ACGGGGAACGGAACTGGCGGCGAGTCCGAGGGAGATGTCATCGGCAATAT
CGACCAGTTCGTGATGCAACCAGCGCCACAGGGAGTGCTCTACAAGTGCC
GCATTACGCGGGACAGGAAGGGCATGGACCGCGGCCTCTTTCCCATCTAC
TACTTGCATCTGGAACGTGACTACGGCAAGAAGATATTTCTGCTGGGAGG
TCGCAAACGCAAGAAGAGCAAGACATCCAACTACATTGTCAGCTGCGATC
CCACGGATTTGTCTCGCAATGCCGATGGCTTCTGTGGCAAACTGCGCTCT
AATGTCTTTGGCACATCCTTCACGGTCTTT
BO07802.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9398-PA | 1332 | king-tubby-RA | 1..864 | 17..880 | 4320 | 100 | Plus |
CG9398-PB | 1383 | king-tubby-RB | 52..915 | 17..880 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:19:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ktub-RB | 2496 | CG9398-RB | 700..1563 | 17..880 | 4320 | 100 | Plus |
ktub-RC | 2523 | CG9398-RC | 991..1590 | 281..880 | 3000 | 100 | Plus |
ktub-RC | 2523 | CG9398-RC | 700..964 | 17..281 | 1325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:19:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21122000..21122470 | 281..751 | 2355 | 100 | Plus |
2R | 25286936 | 2R | 21121639..21121903 | 17..281 | 1325 | 100 | Plus |
2R | 25286936 | 2R | 21122524..21122656 | 748..880 | 665 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:19:08 has no hits.
BO07802.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:34 Download gff for
BO07802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9398-PA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:20 Download gff for
BO07802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9398-PB | 46..915 | 9..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:49:11 Download gff for
BO07802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ktub-RB | 694..1563 | 9..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:57:12 Download gff for
BO07802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ktub-RB | 694..1563 | 9..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:57:12 Download gff for
BO07802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21121633..21121903 | 9..281 | 98 | -> | Plus |
2R | 21122001..21122468 | 282..749 | 100 | -> | Plus |
2R | 21122526..21122656 | 750..880 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:49:11 Download gff for
BO07802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17009138..17009408 | 9..281 | 98 | -> | Plus |
arm_2R | 17009506..17009973 | 282..749 | 100 | -> | Plus |
arm_2R | 17010031..17010161 | 750..880 | 100 | | Plus |
BO07802.complete Sequence
1363 bp (1363 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630936
> BO07802.complete
GAAGTTATCAGTCGACATGGAGGCCTACATCCGGCAGAAGAGAGCCTCGC
CGGGAATGGTCCAGGCCAGCGATTTGCAGATCAATCGACCCATGTCCGGG
ATGCGCAGCAACAGCCGGGAGCTGCACGCCTACGACGGACCCATGCAGTT
CATCAGTTCGCCCCAAAATCCGGACCAGATACTCACCAACGGCAGTCCCG
GCGGCATCAATCCGGTTGCCATGAACACGAGTCGCAATCACTCGAATAAC
ATGCGCAGCCTAAGCACCATCAACCAGGAGGCTGATCTCATAGAGGAGAT
CTCATCGCACGAGTTGGAGGACGAGGAGAGCAGTCCGGTGACGGTGATTG
AGCAGCACCAGCAGTCAGCCTCGCACAGCGCCAACTCGACGCAATCGCAG
AAACCACGTGCCCGCCAGCATTCCTTTAGCGACAATCTGGACGAGGATGA
CTACACCAATCGCAATGTGGCCGGTGCTGCTCCAGTGCGTCCCGCCGGCA
TGGCCTCATCGCCGTACAAGGACGCAACGCTGGACGGCAGCAGCAACGGG
ACGGGGAACGGAACTGGCGGCGAGTCCGAGGGAGATGTCATCGGCAATAT
CGACCAGTTCGTGATGCAACCAGCGCCACAGGGAGTGCTCTACAAGTGCC
GCATTACGCGGGACAGGAAGGGCATGGACCGCGGCCTCTTTCCCATCTAC
TACTTGCATCTGGAACGTGACTACGGCAAGAAGATATTTCTGCTGGGAGG
TCGCAAACGCAAGAAGAGCAAGACATCCAACTACATTGTCAGCTGCGATC
CCACGGATTTGTCTCGCAATGCCGATGGCTTCTGTGGCAAACTGCGCTCT
AATGTCTTTGGCACATCCTTCACGGTCTTTGACAACGGCAACAAGGAGAG
CACAGAGAGTCCTCGACTCGACTTGGCCGTCATCATTTATGACACCAACA
TTTTGGGATTCAAGGGGCCACGCAACATGACTGTTATACTGCCCGGCATG
ACTGAGGACGATCAGCGTGTCAAGATCAGTTCGGCGGATCCCAAACAGCA
GGGCATCCTTGACCTATGGAAAATGAAGAACATGGACAACATCGTGGAGC
TGCACAATAAGACGCCAGTGTGGAACGATGAAACCCAATCGTATGTGCTC
AACTTTCATGGGCGCGTCACCCAGGCGTCGGTGAAGAACTTTCAGTTGGT
CCACGACTCCGATCCGGAGTACATAGTAATGCAGTTCGGCCGCACCTCGG
AGGACGTCTTCACCATGGACTATCGCTATCCCCTGTGCGCCATGCAGGCA
TTCGCCATTGCCCTCAGTAGTTTCGATGGCAAAATAGCCTGCGAGGCAAG
CTTTCTAGACCAT
BO07802.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:44:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ktub-RB | 1383 | CG9398-PB | 52..1380 | 17..1345 | 6645 | 100 | Plus |
ktub-RC | 1410 | CG9398-PC | 343..1407 | 281..1345 | 5325 | 100 | Plus |
ktub-RC | 1410 | CG9398-PC | 52..316 | 17..281 | 1325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:44:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ktub-RB | 2496 | CG9398-RB | 700..2028 | 17..1345 | 6645 | 100 | Plus |
ktub-RC | 2523 | CG9398-RC | 991..2055 | 281..1345 | 5325 | 100 | Plus |
ktub-RC | 2523 | CG9398-RC | 700..964 | 17..281 | 1325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:44:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21122000..21122470 | 281..751 | 2355 | 100 | Plus |
2R | 25286936 | 2R | 21122968..21123236 | 1077..1345 | 1345 | 100 | Plus |
2R | 25286936 | 2R | 21121639..21121903 | 17..281 | 1325 | 100 | Plus |
2R | 25286936 | 2R | 21122524..21122717 | 748..941 | 970 | 100 | Plus |
2R | 25286936 | 2R | 21122774..21122911 | 941..1078 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:44:32 has no hits.
BO07802.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:34 Download gff for
BO07802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
king-tubby-RB | 46..1383 | 9..1348 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:10 Download gff for
BO07802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
king-tubby-RB | 692..2036 | 9..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:43:21 Download gff for
BO07802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ktub-RB | 700..2028 | 17..1347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:35 Download gff for
BO07802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
king-tubby-RB | 692..2036 | 9..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:40 Download gff for
BO07802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ktub-RB | 700..2028 | 17..1347 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:40 Download gff for
BO07802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21121639..21121903 | 17..281 | 100 | -> | Plus |
2R | 21122001..21122468 | 282..749 | 100 | -> | Plus |
2R | 21122526..21122716 | 750..940 | 100 | -> | Plus |
2R | 21122774..21122911 | 941..1078 | 100 | -> | Plus |
2R | 21122970..21123236 | 1079..1347 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:43:21 Download gff for
BO07802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17009144..17009408 | 17..281 | 100 | -> | Plus |
arm_2R | 17009506..17009973 | 282..749 | 100 | -> | Plus |
arm_2R | 17010031..17010221 | 750..940 | 100 | -> | Plus |
arm_2R | 17010279..17010416 | 941..1078 | 100 | -> | Plus |
arm_2R | 17010475..17010741 | 1079..1347 | 99 | | Plus |
BO07802.pep Sequence
Translation from 16 to 1363
> BO07802.pep
MEAYIRQKRASPGMVQASDLQINRPMSGMRSNSRELHAYDGPMQFISSPQ
NPDQILTNGSPGGINPVAMNTSRNHSNNMRSLSTINQEADLIEEISSHEL
EDEESSPVTVIEQHQQSASHSANSTQSQKPRARQHSFSDNLDEDDYTNRN
VAGAAPVRPAGMASSPYKDATLDGSSNGTGNGTGGESEGDVIGNIDQFVM
QPAPQGVLYKCRITRDRKGMDRGLFPIYYLHLERDYGKKIFLLGGRKRKK
SKTSNYIVSCDPTDLSRNADGFCGKLRSNVFGTSFTVFDNGNKESTESPR
LDLAVIIYDTNILGFKGPRNMTVILPGMTEDDQRVKISSADPKQQGILDL
WKMKNMDNIVELHNKTPVWNDETQSYVLNFHGRVTQASVKNFQLVHDSDP
EYIVMQFGRTSEDVFTMDYRYPLCAMQAFAIALSSFDGKIACEASFLDH
BO07802.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ktub-PB | 460 | CG9398-PB | 18..460 | 1..443 | 2319 | 100 | Plus |
ktub-PC | 469 | CG9398-PC | 18..469 | 1..443 | 2299 | 98 | Plus |
Tusp-PG | 1430 | CG5586-PG | 1354..1424 | 362..435 | 195 | 50 | Plus |
Tusp-PE | 1432 | CG5586-PE | 1356..1426 | 362..435 | 195 | 50 | Plus |
Tusp-PD | 1432 | CG5586-PD | 1356..1426 | 362..435 | 195 | 50 | Plus |