Clone BO07802 Report

Search the DGRC for BO07802

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:78
Well:2
Vector:pDNR-Dual
Associated Gene/Transcriptking-tubby-RA
Protein status:BO07802.pep: validated not full length
Sequenced Size:1363

Clone Sequence Records

BO07802.3prime Sequence

998 bp (893 high quality bases) assembled on 2006-01-06

> BO07802.3prime
ATGGTCTAGAAAGCTTGCCTCGCAGGCTATTTTGCCATCGAAACTACTGA
GGGCAATGGCGAATGCCTGCATGGCGCACAGGGGATAGCGATAGTCCATG
GTGAAGACGTCCTCCGAGGTGCGGCCGAACTGCATTACTATGTACTCCGG
ATCGGAGTCGTGGACCAACTGAAAGTTCTTCACCGACGCCTGGGTGACGC
GCCCATGAAAGTTGAGCACATACGATTGGGTTTCATCGTTCCACACTGGC
GTCTTATTGTGCAGCTCCACGATGTTGTCCATGTTCTTCATTTTCCATAG
GTCAAGGATGCCCTGCTGTTTGGGATCCGCCGAACTGATCTTGACACGCT
GATCGTCCTCAGTCATGCCGGGCAGTATAACAGTCATGTTGCGTGGCCCC
TTGAATCCCAAAATGTTGGTGTCATAAATGATGACGGCCAAGTCGAGTCG
AGGACTCTCTGTGCTCTCCTTGTTGCCGTTGTCAAAGACCGTGAAGGATG
TGCCAAAGACATTAGAGCGCAGTTTGCCACAGAAGCCATCGGCATTGCGA
GACAAATCCGTGGGATCGCAGCTGACAATGTAGTTGGATGTCTTGCTCTT
CTTGCGTTTGCGACCTCCCAGCAGAAATATCTTCTTGCCGTAGTCACGTT
CCAGATGCAAGTAGTAGATGGGAAAGAGGCCGCGGTCCATGCCCTTCCTG
TCCCGCGTAATGCGGCACTTGTAGAGCACTCCCTGTGGCGCTGGTTGCAT
CACGAACTGGTCGATATTGCCGATGACATCTCCCTCGGACTCGCCGCCAG
TTCCGTTCCCCGTCCCGTTGCTGCTGCCGTCCAGCGTTGCGTCCTTGTAC
GGCGATGAGGCCATGCCGGCGGGACGCACTGGAGCAGCACCGGCCACATT
GCGATTGGTGTAGTCATCCTCGTCCAGATTGTCGCTAAAGGAATGCTGGC
GGGCACGTGGTTTCTGCGATTGCGTCGAGTTGGCGCTGTGCGAGGCTG

BO07802.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9398-PA 1332 king-tubby-RA 350..1329 998..19 4900 100 Minus
CG9398-PB 1383 king-tubby-RB 401..1380 998..19 4900 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
ktub-RC 2523 CG9398-RC 1076..2055 998..19 4900 100 Minus
ktub-RB 2496 CG9398-RB 1049..2028 998..19 4900 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21122085..21122470 998..613 1930 100 Minus
2R 25286936 2R 21122968..21123236 287..19 1345 100 Minus
2R 25286936 2R 21122524..21122717 616..423 970 100 Minus
2R 25286936 2R 21122774..21122911 423..286 690 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:03:27 has no hits.

BO07802.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:33 Download gff for BO07802.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9398-PA 350..1332 16..998 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:19 Download gff for BO07802.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9398-PB 401..1383 16..998 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:08:55 Download gff for BO07802.3prime
Subject Subject Range Query Range Percent Splice Strand
ktub-RB 1049..2038 8..998 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:34:03 Download gff for BO07802.3prime
Subject Subject Range Query Range Percent Splice Strand
ktub-RB 1049..2038 8..998 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:34:03 Download gff for BO07802.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21122970..21123246 8..285 98   Minus
2R 21122085..21122468 615..998 100 -> Minus
2R 21122526..21122716 424..614 100 -> Minus
2R 21122774..21122911 286..423 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:08:55 Download gff for BO07802.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17009590..17009973 615..998 100 -> Minus
arm_2R 17010031..17010221 424..614 100 -> Minus
arm_2R 17010279..17010416 286..423 100 -> Minus
arm_2R 17010475..17010751 8..285 98   Minus

BO07802.5prime Sequence

880 bp (753 high quality bases) assembled on 2006-01-06

> BO07802.5prime
GAAGTTATCAGTCGACATGGAGGCCTACATCCGGCAGAAGAGAGCCTCGC
CGGGAATGGTCCAGGCCAGCGATTTGCAGATCAATCGACCCATGTCCGGG
ATGCGCAGCAACAGCCGGGAGCTGCACGCCTACGACGGACCCATGCAGTT
CATCAGTTCGCCCCAAAATCCGGACCAGATACTCACCAACGGCAGTCCCG
GCGGCATCAATCCGGTTGCCATGAACACGAGTCGCAATCACTCGAATAAC
ATGCGCAGCCTAAGCACCATCAACCAGGAGGCTGATCTCATAGAGGAGAT
CTCATCGCACGAGTTGGAGGACGAGGAGAGCAGTCCGGTGACGGTGATTG
AGCAGCACCAGCAGTCAGCCTCGCACAGCGCCAACTCGACGCAATCGCAG
AAACCACGTGCCCGCCAGCATTCCTTTAGCGACAATCTGGACGAGGATGA
CTACACCAATCGCAATGTGGCCGGTGCTGCTCCAGTGCGTCCCGCCGGCA
TGGCCTCATCGCCGTACAAGGACGCAACGCTGGACGGCAGCAGCAACGGG
ACGGGGAACGGAACTGGCGGCGAGTCCGAGGGAGATGTCATCGGCAATAT
CGACCAGTTCGTGATGCAACCAGCGCCACAGGGAGTGCTCTACAAGTGCC
GCATTACGCGGGACAGGAAGGGCATGGACCGCGGCCTCTTTCCCATCTAC
TACTTGCATCTGGAACGTGACTACGGCAAGAAGATATTTCTGCTGGGAGG
TCGCAAACGCAAGAAGAGCAAGACATCCAACTACATTGTCAGCTGCGATC
CCACGGATTTGTCTCGCAATGCCGATGGCTTCTGTGGCAAACTGCGCTCT
AATGTCTTTGGCACATCCTTCACGGTCTTT

BO07802.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9398-PA 1332 king-tubby-RA 1..864 17..880 4320 100 Plus
CG9398-PB 1383 king-tubby-RB 52..915 17..880 4320 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:19:12
Subject Length Description Subject Range Query Range Score Percent Strand
ktub-RB 2496 CG9398-RB 700..1563 17..880 4320 100 Plus
ktub-RC 2523 CG9398-RC 991..1590 281..880 3000 100 Plus
ktub-RC 2523 CG9398-RC 700..964 17..281 1325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21122000..21122470 281..751 2355 100 Plus
2R 25286936 2R 21121639..21121903 17..281 1325 100 Plus
2R 25286936 2R 21122524..21122656 748..880 665 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:19:08 has no hits.

BO07802.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:34 Download gff for BO07802.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9398-PA 1..864 17..880 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:20 Download gff for BO07802.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9398-PB 46..915 9..880 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:49:11 Download gff for BO07802.5prime
Subject Subject Range Query Range Percent Splice Strand
ktub-RB 694..1563 9..880 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:57:12 Download gff for BO07802.5prime
Subject Subject Range Query Range Percent Splice Strand
ktub-RB 694..1563 9..880 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:57:12 Download gff for BO07802.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21121633..21121903 9..281 98 -> Plus
2R 21122001..21122468 282..749 100 -> Plus
2R 21122526..21122656 750..880 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:49:11 Download gff for BO07802.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17009138..17009408 9..281 98 -> Plus
arm_2R 17009506..17009973 282..749 100 -> Plus
arm_2R 17010031..17010161 750..880 100   Plus

BO07802.complete Sequence

1363 bp (1363 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630936

> BO07802.complete
GAAGTTATCAGTCGACATGGAGGCCTACATCCGGCAGAAGAGAGCCTCGC
CGGGAATGGTCCAGGCCAGCGATTTGCAGATCAATCGACCCATGTCCGGG
ATGCGCAGCAACAGCCGGGAGCTGCACGCCTACGACGGACCCATGCAGTT
CATCAGTTCGCCCCAAAATCCGGACCAGATACTCACCAACGGCAGTCCCG
GCGGCATCAATCCGGTTGCCATGAACACGAGTCGCAATCACTCGAATAAC
ATGCGCAGCCTAAGCACCATCAACCAGGAGGCTGATCTCATAGAGGAGAT
CTCATCGCACGAGTTGGAGGACGAGGAGAGCAGTCCGGTGACGGTGATTG
AGCAGCACCAGCAGTCAGCCTCGCACAGCGCCAACTCGACGCAATCGCAG
AAACCACGTGCCCGCCAGCATTCCTTTAGCGACAATCTGGACGAGGATGA
CTACACCAATCGCAATGTGGCCGGTGCTGCTCCAGTGCGTCCCGCCGGCA
TGGCCTCATCGCCGTACAAGGACGCAACGCTGGACGGCAGCAGCAACGGG
ACGGGGAACGGAACTGGCGGCGAGTCCGAGGGAGATGTCATCGGCAATAT
CGACCAGTTCGTGATGCAACCAGCGCCACAGGGAGTGCTCTACAAGTGCC
GCATTACGCGGGACAGGAAGGGCATGGACCGCGGCCTCTTTCCCATCTAC
TACTTGCATCTGGAACGTGACTACGGCAAGAAGATATTTCTGCTGGGAGG
TCGCAAACGCAAGAAGAGCAAGACATCCAACTACATTGTCAGCTGCGATC
CCACGGATTTGTCTCGCAATGCCGATGGCTTCTGTGGCAAACTGCGCTCT
AATGTCTTTGGCACATCCTTCACGGTCTTTGACAACGGCAACAAGGAGAG
CACAGAGAGTCCTCGACTCGACTTGGCCGTCATCATTTATGACACCAACA
TTTTGGGATTCAAGGGGCCACGCAACATGACTGTTATACTGCCCGGCATG
ACTGAGGACGATCAGCGTGTCAAGATCAGTTCGGCGGATCCCAAACAGCA
GGGCATCCTTGACCTATGGAAAATGAAGAACATGGACAACATCGTGGAGC
TGCACAATAAGACGCCAGTGTGGAACGATGAAACCCAATCGTATGTGCTC
AACTTTCATGGGCGCGTCACCCAGGCGTCGGTGAAGAACTTTCAGTTGGT
CCACGACTCCGATCCGGAGTACATAGTAATGCAGTTCGGCCGCACCTCGG
AGGACGTCTTCACCATGGACTATCGCTATCCCCTGTGCGCCATGCAGGCA
TTCGCCATTGCCCTCAGTAGTTTCGATGGCAAAATAGCCTGCGAGGCAAG
CTTTCTAGACCAT

BO07802.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
ktub-RB 1383 CG9398-PB 52..1380 17..1345 6645 100 Plus
ktub-RC 1410 CG9398-PC 343..1407 281..1345 5325 100 Plus
ktub-RC 1410 CG9398-PC 52..316 17..281 1325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
ktub-RB 2496 CG9398-RB 700..2028 17..1345 6645 100 Plus
ktub-RC 2523 CG9398-RC 991..2055 281..1345 5325 100 Plus
ktub-RC 2523 CG9398-RC 700..964 17..281 1325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:44:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21122000..21122470 281..751 2355 100 Plus
2R 25286936 2R 21122968..21123236 1077..1345 1345 100 Plus
2R 25286936 2R 21121639..21121903 17..281 1325 100 Plus
2R 25286936 2R 21122524..21122717 748..941 970 100 Plus
2R 25286936 2R 21122774..21122911 941..1078 690 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:44:32 has no hits.

BO07802.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:34 Download gff for BO07802.complete
Subject Subject Range Query Range Percent Splice Strand
king-tubby-RB 46..1383 9..1348 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:10 Download gff for BO07802.complete
Subject Subject Range Query Range Percent Splice Strand
king-tubby-RB 692..2036 9..1356 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:43:21 Download gff for BO07802.complete
Subject Subject Range Query Range Percent Splice Strand
ktub-RB 700..2028 17..1347 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:35 Download gff for BO07802.complete
Subject Subject Range Query Range Percent Splice Strand
king-tubby-RB 692..2036 9..1356 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:40 Download gff for BO07802.complete
Subject Subject Range Query Range Percent Splice Strand
ktub-RB 700..2028 17..1347 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:40 Download gff for BO07802.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21121639..21121903 17..281 100 -> Plus
2R 21122001..21122468 282..749 100 -> Plus
2R 21122526..21122716 750..940 100 -> Plus
2R 21122774..21122911 941..1078 100 -> Plus
2R 21122970..21123236 1079..1347 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:43:21 Download gff for BO07802.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17009144..17009408 17..281 100 -> Plus
arm_2R 17009506..17009973 282..749 100 -> Plus
arm_2R 17010031..17010221 750..940 100 -> Plus
arm_2R 17010279..17010416 941..1078 100 -> Plus
arm_2R 17010475..17010741 1079..1347 99   Plus

BO07802.pep Sequence

Translation from 16 to 1363

> BO07802.pep
MEAYIRQKRASPGMVQASDLQINRPMSGMRSNSRELHAYDGPMQFISSPQ
NPDQILTNGSPGGINPVAMNTSRNHSNNMRSLSTINQEADLIEEISSHEL
EDEESSPVTVIEQHQQSASHSANSTQSQKPRARQHSFSDNLDEDDYTNRN
VAGAAPVRPAGMASSPYKDATLDGSSNGTGNGTGGESEGDVIGNIDQFVM
QPAPQGVLYKCRITRDRKGMDRGLFPIYYLHLERDYGKKIFLLGGRKRKK
SKTSNYIVSCDPTDLSRNADGFCGKLRSNVFGTSFTVFDNGNKESTESPR
LDLAVIIYDTNILGFKGPRNMTVILPGMTEDDQRVKISSADPKQQGILDL
WKMKNMDNIVELHNKTPVWNDETQSYVLNFHGRVTQASVKNFQLVHDSDP
EYIVMQFGRTSEDVFTMDYRYPLCAMQAFAIALSSFDGKIACEASFLDH

BO07802.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:28
Subject Length Description Subject Range Query Range Score Percent Strand
ktub-PB 460 CG9398-PB 18..460 1..443 2319 100 Plus
ktub-PC 469 CG9398-PC 18..469 1..443 2299 98 Plus
Tusp-PG 1430 CG5586-PG 1354..1424 362..435 195 50 Plus
Tusp-PE 1432 CG5586-PE 1356..1426 362..435 195 50 Plus
Tusp-PD 1432 CG5586-PD 1356..1426 362..435 195 50 Plus