Clone BO07804 Report

Search the DGRC for BO07804

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:78
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG30160-RA
Protein status:BO07804.pep: validated full length
Sequenced Size:700

Clone Sequence Records

BO07804.5prime Sequence

698 bp (697 high quality bases) assembled on 2006-01-06

> BO07804.5prime
GAAGTTATCAGTCGACATGAACTGTCTATCCGCGATGTTCAAGTACCTGC
TGTACTTGCTCAACCTGGTGTTCGTGGCCGGTGGCATCCTGCTCATTGTG
GTGGGCTCCATCATGCTCTCCACGATGGGCAACTTTACGGCCTTCGACGG
AGGCGTTAACACCCAGACCATCCCGATCTGCATTATCGTCATCGGAAGTG
TCACCTTCGTAGTGGCCTTCTTCGGATGCTGCGGCACCATTCGCGAGAAC
GCCTGCTGCACCACCATCTACGCCATCTGCATGCTGATTCTGTTCGGCCT
GCAACTGGCCCTCTCCATCTGGATCTTCGCGGCCAACGACAAGTTCCTGT
CCAGCATGGGCAAGGCAGTGGACAAGGCGTGGGATGAGAACAATGCCGCC
CAGGGATACCCCATGGATGCCCTCCAGTTGGCCTTCTCTTGCTGTGGCAA
CACGGGATACCAACAGTATGAAACCGTGCCCAGCTCCTGCTGCGGCTACA
AGGATCGCACCAAGGTGTGCGAAGCGGAGATCTACAGCCAGCGACCTGGC
TGCCGGCAGGAGTTCGTCGATTTCTGGGCCTCCAATACGGACCTGATTCG
ATGGAGCAGTCTGATCATCGCCCTCTTCGAGCTGGGCATCTTCATCATGT
CGTGCTGCCTCGCCAGCGCGATGAGGAAGCGCGCAAGCTTTCTAGACC

BO07804.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG18816-PA 669 Tsp42Eb-RA 1..666 17..682 3305 99.8 Plus
CG18816-PB 669 Tsp42Eb-RB 1..666 17..682 3305 99.8 Plus
CG30160-PA 669 CG30160-RA 1..666 17..682 3305 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG30160-RA 844 CG30160-RA 61..727 16..682 3320 99.9 Plus
Tsp42Eb-RB 865 CG18816-RB 82..748 16..682 3320 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6998929..6999181 16..268 1265 100 Plus
2R 25286936 2R 7005217..7005469 16..268 1265 100 Plus
2R 25286936 2R 6999483..6999731 434..682 1230 99.6 Plus
2R 25286936 2R 7005771..7006019 434..682 1230 99.6 Plus
2R 25286936 2R 6999246..6999410 269..433 825 100 Plus
2R 25286936 2R 7005534..7005698 269..433 825 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:19:32 has no hits.

BO07804.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:36 Download gff for BO07804.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18816-PA 1..669 17..683 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:24 Download gff for BO07804.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30160-PA 1..669 17..683 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:49:13 Download gff for BO07804.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30160-RA 55..733 9..688 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:31 Download gff for BO07804.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eb-RB 76..754 9..688 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:31 Download gff for BO07804.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6998923..6999181 9..268 98 -> Plus
2R 6999246..6999410 269..433 100 -> Plus
2R 6999483..6999737 434..688 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:49:13 Download gff for BO07804.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2886428..2886686 9..268 98 -> Plus
arm_2R 2886751..2886915 269..433 100 -> Plus
arm_2R 2886988..2887242 434..688 98   Plus

BO07804.3prime Sequence

698 bp (697 high quality bases) assembled on 2006-01-06

> BO07804.3prime
ATGGTCTAGAAAGCTTGCGCGCTTCCTCATCGCGCTGGCGAGGCAGCACG
ACATGATGAAGATGCCCAGCTCGAAGAGGGCGATGATCAGACTGCTCCAT
CGAATCAGGTCCGTATTGGAGGCCCAGAAATCGACGAACTCCTGCCGGCA
GCCAGGTCGCTGGCTGTAGATCTCCGCTTCGCACACCTTGGTGCGATCCT
TGTAGCCGCAGCAGGAGCTGGGCACGGTTTCATACTGTTGGTATCCCGTG
TTGCCACAGCAAGAGAAGGCCAACTGGAGGGCATCCATGGGGTATCCCTG
GGCGGCATTGTTCTCATCCCACGCCTTGTCCACTGCCTTGCCCATGCTGG
ACAGGAACTTGTCGTTGGCCGCGAAGATCCAGATGGAGAGGGCCAGTTGC
AGGCCGAACAGAATCAGCATGCAGATGGCGTAGATGGTGGTGCAGCAGGC
GTTCTCGCGAATGGTGCCGCAGCATCCGAAGAAGGCCACTACGAAGGTGA
CACTTCCGATGACGATAATGCAGATCGGGATGGTCTGGGTGTTAACGCCT
CCGTCGAAGGCCGTAAAGTTGCCCATCGTGGAGAGCATGATGGAGCCCAC
CACAATGAGCAGGATGCCACCGGCCACGAACACCAGGTTGAGCAAGTACA
GCAGGTACTTGAACATCGCGGATAGACAGTTCATGTCGACTGATAACT

BO07804.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG18816-PA 669 Tsp42Eb-RA 1..666 684..19 3305 99.8 Minus
CG18816-PB 669 Tsp42Eb-RB 1..666 684..19 3305 99.8 Minus
CG30160-PA 669 CG30160-RA 1..666 684..19 3305 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG30160-RA 844 CG30160-RA 61..727 685..19 3320 99.9 Minus
Tsp42Eb-RB 865 CG18816-RB 82..748 685..19 3320 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6998929..6999181 685..433 1265 100 Minus
2R 25286936 2R 7005217..7005469 685..433 1265 100 Minus
2R 25286936 2R 6999483..6999731 267..19 1230 99.6 Minus
2R 25286936 2R 7005771..7006019 267..19 1230 99.6 Minus
2R 25286936 2R 6999246..6999410 432..268 825 100 Minus
2R 25286936 2R 7005534..7005698 432..268 825 100 Minus
Blast to na_te.dros performed on 2015-02-12 23:58:14 has no hits.

BO07804.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:35 Download gff for BO07804.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18816-PA 1..669 18..684 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:22 Download gff for BO07804.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30160-PA 1..669 18..684 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:29:50 Download gff for BO07804.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30160-RA 55..733 13..692 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:38:57 Download gff for BO07804.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eb-RB 76..754 13..692 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:38:57 Download gff for BO07804.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6998923..6999181 433..692 98 -> Minus
2R 6999246..6999410 268..432 100 -> Minus
2R 6999483..6999737 13..267 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:29:50 Download gff for BO07804.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2886428..2886686 433..692 98 -> Minus
arm_2R 2886751..2886915 268..432 100 -> Minus
arm_2R 2886988..2887242 13..267 98   Minus

BO07804.complete Sequence

700 bp (700 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630937

> BO07804.complete
GAAGTTATCAGTCGACATGAACTGTCTATCCGCGATGTTCAAGTACCTGC
TGTACTTGCTCAACCTGGTGTTCGTGGCCGGTGGCATCCTGCTCATTGTG
GTGGGCTCCATCATGCTCTCCACGATGGGCAACTTTACGGCCTTCGACGG
AGGCGTTAACACCCAGACCATCCCGATCTGCATTATCGTCATCGGAAGTG
TCACCTTCGTAGTGGCCTTCTTCGGATGCTGCGGCACCATTCGCGAGAAC
GCCTGCTGCACCACCATCTACGCCATCTGCATGCTGATTCTGTTCGGCCT
GCAACTGGCCCTCTCCATCTGGATCTTCGCGGCCAACGACAAGTTCCTGT
CCAGCATGGGCAAGGCAGTGGACAAGGCGTGGGATGAGAACAATGCCGCC
CAGGGATACCCCATGGATGCCCTCCAGTTGGCCTTCTCTTGCTGTGGCAA
CACGGGATACCAACAGTATGAAACCGTGCCCAGCTCCTGCTGCGGCTACA
AGGATCGCACCAAGGTGTGCGAAGCGGAGATCTACAGCCAGCGACCTGGC
TGCCGGCAGGAGTTCGTCGATTTCTGGGCCTCCAATACGGACCTGATTCG
ATGGAGCAGTCTGATCATCGCCCTCTTCGAGCTGGGCATCTTCATCATGT
CGTGCTGCCTCGCCAGCGCGATGAGGAAGCGCGCAAGCTTTCTAGACCAT

BO07804.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:52:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG30160-RA 669 CG30160-PA 1..666 17..682 3315 99.8 Plus
Tsp42Eb-RB 669 CG18816-PB 1..666 17..682 3315 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:52:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG30160-RA 844 CG30160-RA 61..727 16..682 3320 99.9 Plus
Tsp42Eb-RB 865 CG18816-RB 82..748 16..682 3320 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:52:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6998929..6999181 16..268 1265 100 Plus
2R 25286936 2R 7005217..7005469 16..268 1265 100 Plus
2R 25286936 2R 6999483..6999731 434..682 1230 99.6 Plus
2R 25286936 2R 7005771..7006019 434..682 1230 99.6 Plus
2R 25286936 2R 6999246..6999410 269..433 825 100 Plus
2R 25286936 2R 7005534..7005698 269..433 825 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:52:46 has no hits.

BO07804.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:46 Download gff for BO07804.complete
Subject Subject Range Query Range Percent Splice Strand
CG30160-RA 1..669 17..683 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:55 Download gff for BO07804.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eb-RB 71..749 9..688 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:40 Download gff for BO07804.complete
Subject Subject Range Query Range Percent Splice Strand
CG30160-RA 62..727 17..684 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:46 Download gff for BO07804.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eb-RB 71..749 9..688 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:57 Download gff for BO07804.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eb-RB 83..748 17..684 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:57 Download gff for BO07804.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6998930..6999181 17..268 100 -> Plus
2R 6999246..6999410 269..433 100 -> Plus
2R 6999483..6999731 434..684 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:40 Download gff for BO07804.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2886435..2886686 17..268 100 -> Plus
arm_2R 2886751..2886915 269..433 100 -> Plus
arm_2R 2886988..2887236 434..684 98   Plus

BO07804.pep Sequence

Translation from 16 to 700

> BO07804.pep
MNCLSAMFKYLLYLLNLVFVAGGILLIVVGSIMLSTMGNFTAFDGGVNTQ
TIPICIIVIGSVTFVVAFFGCCGTIRENACCTTIYAICMLILFGLQLALS
IWIFAANDKFLSSMGKAVDKAWDENNAAQGYPMDALQLAFSCCGNTGYQQ
YETVPSSCCGYKDRTKVCEAEIYSQRPGCRQEFVDFWASNTDLIRWSSLI
IALFELGIFIMSCCLASAMRKRASFLDH

BO07804.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG30160-PA 222 CG30160-PA 1..222 1..222 1177 100 Plus
Tsp42Eb-PB 222 CG18816-PB 1..222 1..222 1177 100 Plus
Tsp42Ec-PA 232 CG12847-PA 1..224 1..222 513 41.9 Plus
Tsp42Ea-PC 226 CG18817-PC 1..218 1..220 454 39 Plus
Tsp42Ea-PB 226 CG18817-PB 1..218 1..220 454 39 Plus