Clone Sequence Records
BO07804.5prime Sequence
698 bp (697 high quality bases) assembled on 2006-01-06
> BO07804.5prime
GAAGTTATCAGTCGACATGAACTGTCTATCCGCGATGTTCAAGTACCTGC
TGTACTTGCTCAACCTGGTGTTCGTGGCCGGTGGCATCCTGCTCATTGTG
GTGGGCTCCATCATGCTCTCCACGATGGGCAACTTTACGGCCTTCGACGG
AGGCGTTAACACCCAGACCATCCCGATCTGCATTATCGTCATCGGAAGTG
TCACCTTCGTAGTGGCCTTCTTCGGATGCTGCGGCACCATTCGCGAGAAC
GCCTGCTGCACCACCATCTACGCCATCTGCATGCTGATTCTGTTCGGCCT
GCAACTGGCCCTCTCCATCTGGATCTTCGCGGCCAACGACAAGTTCCTGT
CCAGCATGGGCAAGGCAGTGGACAAGGCGTGGGATGAGAACAATGCCGCC
CAGGGATACCCCATGGATGCCCTCCAGTTGGCCTTCTCTTGCTGTGGCAA
CACGGGATACCAACAGTATGAAACCGTGCCCAGCTCCTGCTGCGGCTACA
AGGATCGCACCAAGGTGTGCGAAGCGGAGATCTACAGCCAGCGACCTGGC
TGCCGGCAGGAGTTCGTCGATTTCTGGGCCTCCAATACGGACCTGATTCG
ATGGAGCAGTCTGATCATCGCCCTCTTCGAGCTGGGCATCTTCATCATGT
CGTGCTGCCTCGCCAGCGCGATGAGGAAGCGCGCAAGCTTTCTAGACC
BO07804.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18816-PA | 669 | Tsp42Eb-RA | 1..666 | 17..682 | 3305 | 99.8 | Plus |
CG18816-PB | 669 | Tsp42Eb-RB | 1..666 | 17..682 | 3305 | 99.8 | Plus |
CG30160-PA | 669 | CG30160-RA | 1..666 | 17..682 | 3305 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:19:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30160-RA | 844 | CG30160-RA | 61..727 | 16..682 | 3320 | 99.9 | Plus |
Tsp42Eb-RB | 865 | CG18816-RB | 82..748 | 16..682 | 3320 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:19:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6998929..6999181 | 16..268 | 1265 | 100 | Plus |
2R | 25286936 | 2R | 7005217..7005469 | 16..268 | 1265 | 100 | Plus |
2R | 25286936 | 2R | 6999483..6999731 | 434..682 | 1230 | 99.6 | Plus |
2R | 25286936 | 2R | 7005771..7006019 | 434..682 | 1230 | 99.6 | Plus |
2R | 25286936 | 2R | 6999246..6999410 | 269..433 | 825 | 100 | Plus |
2R | 25286936 | 2R | 7005534..7005698 | 269..433 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:19:32 has no hits.
BO07804.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:36 Download gff for
BO07804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18816-PA | 1..669 | 17..683 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:24 Download gff for
BO07804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30160-PA | 1..669 | 17..683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:49:13 Download gff for
BO07804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30160-RA | 55..733 | 9..688 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:31 Download gff for
BO07804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Eb-RB | 76..754 | 9..688 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:31 Download gff for
BO07804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6998923..6999181 | 9..268 | 98 | -> | Plus |
2R | 6999246..6999410 | 269..433 | 100 | -> | Plus |
2R | 6999483..6999737 | 434..688 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:49:13 Download gff for
BO07804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2886428..2886686 | 9..268 | 98 | -> | Plus |
arm_2R | 2886751..2886915 | 269..433 | 100 | -> | Plus |
arm_2R | 2886988..2887242 | 434..688 | 98 | | Plus |
BO07804.3prime Sequence
698 bp (697 high quality bases) assembled on 2006-01-06
> BO07804.3prime
ATGGTCTAGAAAGCTTGCGCGCTTCCTCATCGCGCTGGCGAGGCAGCACG
ACATGATGAAGATGCCCAGCTCGAAGAGGGCGATGATCAGACTGCTCCAT
CGAATCAGGTCCGTATTGGAGGCCCAGAAATCGACGAACTCCTGCCGGCA
GCCAGGTCGCTGGCTGTAGATCTCCGCTTCGCACACCTTGGTGCGATCCT
TGTAGCCGCAGCAGGAGCTGGGCACGGTTTCATACTGTTGGTATCCCGTG
TTGCCACAGCAAGAGAAGGCCAACTGGAGGGCATCCATGGGGTATCCCTG
GGCGGCATTGTTCTCATCCCACGCCTTGTCCACTGCCTTGCCCATGCTGG
ACAGGAACTTGTCGTTGGCCGCGAAGATCCAGATGGAGAGGGCCAGTTGC
AGGCCGAACAGAATCAGCATGCAGATGGCGTAGATGGTGGTGCAGCAGGC
GTTCTCGCGAATGGTGCCGCAGCATCCGAAGAAGGCCACTACGAAGGTGA
CACTTCCGATGACGATAATGCAGATCGGGATGGTCTGGGTGTTAACGCCT
CCGTCGAAGGCCGTAAAGTTGCCCATCGTGGAGAGCATGATGGAGCCCAC
CACAATGAGCAGGATGCCACCGGCCACGAACACCAGGTTGAGCAAGTACA
GCAGGTACTTGAACATCGCGGATAGACAGTTCATGTCGACTGATAACT
BO07804.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18816-PA | 669 | Tsp42Eb-RA | 1..666 | 684..19 | 3305 | 99.8 | Minus |
CG18816-PB | 669 | Tsp42Eb-RB | 1..666 | 684..19 | 3305 | 99.8 | Minus |
CG30160-PA | 669 | CG30160-RA | 1..666 | 684..19 | 3305 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:58:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30160-RA | 844 | CG30160-RA | 61..727 | 685..19 | 3320 | 99.9 | Minus |
Tsp42Eb-RB | 865 | CG18816-RB | 82..748 | 685..19 | 3320 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:58:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6998929..6999181 | 685..433 | 1265 | 100 | Minus |
2R | 25286936 | 2R | 7005217..7005469 | 685..433 | 1265 | 100 | Minus |
2R | 25286936 | 2R | 6999483..6999731 | 267..19 | 1230 | 99.6 | Minus |
2R | 25286936 | 2R | 7005771..7006019 | 267..19 | 1230 | 99.6 | Minus |
2R | 25286936 | 2R | 6999246..6999410 | 432..268 | 825 | 100 | Minus |
2R | 25286936 | 2R | 7005534..7005698 | 432..268 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:58:14 has no hits.
BO07804.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:35 Download gff for
BO07804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18816-PA | 1..669 | 18..684 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:22 Download gff for
BO07804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30160-PA | 1..669 | 18..684 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:29:50 Download gff for
BO07804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30160-RA | 55..733 | 13..692 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:38:57 Download gff for
BO07804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Eb-RB | 76..754 | 13..692 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:38:57 Download gff for
BO07804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6998923..6999181 | 433..692 | 98 | -> | Minus |
2R | 6999246..6999410 | 268..432 | 100 | -> | Minus |
2R | 6999483..6999737 | 13..267 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:29:50 Download gff for
BO07804.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2886428..2886686 | 433..692 | 98 | -> | Minus |
arm_2R | 2886751..2886915 | 268..432 | 100 | -> | Minus |
arm_2R | 2886988..2887242 | 13..267 | 98 | | Minus |
BO07804.complete Sequence
700 bp (700 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630937
> BO07804.complete
GAAGTTATCAGTCGACATGAACTGTCTATCCGCGATGTTCAAGTACCTGC
TGTACTTGCTCAACCTGGTGTTCGTGGCCGGTGGCATCCTGCTCATTGTG
GTGGGCTCCATCATGCTCTCCACGATGGGCAACTTTACGGCCTTCGACGG
AGGCGTTAACACCCAGACCATCCCGATCTGCATTATCGTCATCGGAAGTG
TCACCTTCGTAGTGGCCTTCTTCGGATGCTGCGGCACCATTCGCGAGAAC
GCCTGCTGCACCACCATCTACGCCATCTGCATGCTGATTCTGTTCGGCCT
GCAACTGGCCCTCTCCATCTGGATCTTCGCGGCCAACGACAAGTTCCTGT
CCAGCATGGGCAAGGCAGTGGACAAGGCGTGGGATGAGAACAATGCCGCC
CAGGGATACCCCATGGATGCCCTCCAGTTGGCCTTCTCTTGCTGTGGCAA
CACGGGATACCAACAGTATGAAACCGTGCCCAGCTCCTGCTGCGGCTACA
AGGATCGCACCAAGGTGTGCGAAGCGGAGATCTACAGCCAGCGACCTGGC
TGCCGGCAGGAGTTCGTCGATTTCTGGGCCTCCAATACGGACCTGATTCG
ATGGAGCAGTCTGATCATCGCCCTCTTCGAGCTGGGCATCTTCATCATGT
CGTGCTGCCTCGCCAGCGCGATGAGGAAGCGCGCAAGCTTTCTAGACCAT
BO07804.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:52:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30160-RA | 669 | CG30160-PA | 1..666 | 17..682 | 3315 | 99.8 | Plus |
Tsp42Eb-RB | 669 | CG18816-PB | 1..666 | 17..682 | 3315 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:52:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30160-RA | 844 | CG30160-RA | 61..727 | 16..682 | 3320 | 99.9 | Plus |
Tsp42Eb-RB | 865 | CG18816-RB | 82..748 | 16..682 | 3320 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:52:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6998929..6999181 | 16..268 | 1265 | 100 | Plus |
2R | 25286936 | 2R | 7005217..7005469 | 16..268 | 1265 | 100 | Plus |
2R | 25286936 | 2R | 6999483..6999731 | 434..682 | 1230 | 99.6 | Plus |
2R | 25286936 | 2R | 7005771..7006019 | 434..682 | 1230 | 99.6 | Plus |
2R | 25286936 | 2R | 6999246..6999410 | 269..433 | 825 | 100 | Plus |
2R | 25286936 | 2R | 7005534..7005698 | 269..433 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:52:46 has no hits.
BO07804.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:46 Download gff for
BO07804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30160-RA | 1..669 | 17..683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:55 Download gff for
BO07804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Eb-RB | 71..749 | 9..688 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:40 Download gff for
BO07804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30160-RA | 62..727 | 17..684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:46 Download gff for
BO07804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Eb-RB | 71..749 | 9..688 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:57 Download gff for
BO07804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Eb-RB | 83..748 | 17..684 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:57 Download gff for
BO07804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6998930..6999181 | 17..268 | 100 | -> | Plus |
2R | 6999246..6999410 | 269..433 | 100 | -> | Plus |
2R | 6999483..6999731 | 434..684 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:40 Download gff for
BO07804.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2886435..2886686 | 17..268 | 100 | -> | Plus |
arm_2R | 2886751..2886915 | 269..433 | 100 | -> | Plus |
arm_2R | 2886988..2887236 | 434..684 | 98 | | Plus |
BO07804.pep Sequence
Translation from 16 to 700
> BO07804.pep
MNCLSAMFKYLLYLLNLVFVAGGILLIVVGSIMLSTMGNFTAFDGGVNTQ
TIPICIIVIGSVTFVVAFFGCCGTIRENACCTTIYAICMLILFGLQLALS
IWIFAANDKFLSSMGKAVDKAWDENNAAQGYPMDALQLAFSCCGNTGYQQ
YETVPSSCCGYKDRTKVCEAEIYSQRPGCRQEFVDFWASNTDLIRWSSLI
IALFELGIFIMSCCLASAMRKRASFLDH
BO07804.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30160-PA | 222 | CG30160-PA | 1..222 | 1..222 | 1177 | 100 | Plus |
Tsp42Eb-PB | 222 | CG18816-PB | 1..222 | 1..222 | 1177 | 100 | Plus |
Tsp42Ec-PA | 232 | CG12847-PA | 1..224 | 1..222 | 513 | 41.9 | Plus |
Tsp42Ea-PC | 226 | CG18817-PC | 1..218 | 1..220 | 454 | 39 | Plus |
Tsp42Ea-PB | 226 | CG18817-PB | 1..218 | 1..220 | 454 | 39 | Plus |