Clone Sequence Records
BO07805.3prime Sequence
932 bp (883 high quality bases) assembled on 2006-01-06
> BO07805.3prime
ATGGTCTAGAAAGCTTGCATGGTACCTTTGGCCATGATGGTTAATGGCAC
TGTTGCTTGGATTTTCCAGCTCCTCAAAGTACTTCCGAGCGTTCCTTATG
TTGACTAGCGTAGCCTCCGAGGGCAGCGTGGGATCCGACATGACCACCAT
CACGTAGGTGTTGCTGGTGAAGGTGTCAATGAAAGCGGCAAATGCGCTAT
TGCGCACCTCCATCGATTGGAACTTAGCGCCCAACTTCGAACAGCTCAGC
TTGAACTGCTTGATGATGTTGGACACCTTTTCAAAGCGGTGCGAGTCGCG
GTTCTTCTTGCTCTGGCAATGGGAGATCACCAAAAAGGTAGCCTTTTCGA
ACAACAGCACCTCGTCCGCCTCAATTACATTTCCGAAATGTGTCACAGAG
TTCTCCAGGGCGGCAACATTTGGTATCAGCATCGTGACAATGGAAGACCA
GGCTTTGTATAATGTTTCATCCCAAATGCTGGTACGGAAACAGGTGACAT
TTCCGGGCTTTGATAATTTTATGAGATCCTCCATGCGCTCAGTAAACACA
CTCTCGCGCAAGCCTTCCGGCACCAGGTCCATTTTGTGCACCAGACAGAA
TATCTTGGCCTCAGGCGAATTCTGCAGCAGTGCCTCCAGGCAGCTCTGGT
AGTAATGGATGTCGCGCTCTATCTCCTGGCTCTCCACATCAAACACATAA
ATCAGCACTTCCACATTACGAAAGATGTTGTCTCGCTGCTGGGCAAAGTA
CTGCTTCATGAAGCCCTCCTGACCGCCACAGTCCCAGAGATTAAGCACCA
GGTTGCCCAGAAACCGCACATGGGAGTGCTCCACATCGATTGTTGCTCCG
AGGCGTGTCGTATCACGGGCGATATAGTTAGCAAAGATAATGGAGCGCAT
GCTGGTCTTTCCGGATCCGCTCTTCCCATCAG
BO07805.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11968-PA | 936 | CG11968-RA | 25..933 | 927..19 | 4545 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:00:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RagA-B-RA | 1408 | CG11968-RA | 110..1024 | 932..19 | 4550 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:00:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8983116..8983551 | 19..454 | 2180 | 100 | Plus |
3R | 32079331 | 3R | 8983613..8983997 | 455..839 | 1925 | 100 | Plus |
3R | 32079331 | 3R | 8984055..8984142 | 840..927 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:00:14 has no hits.
BO07805.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:37 Download gff for
BO07805.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11968-PA | 19..936 | 16..932 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:25 Download gff for
BO07805.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11968-PA | 19..936 | 16..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:57:09 Download gff for
BO07805.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RagA-B-RA | 102..1016 | 19..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:40:03 Download gff for
BO07805.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RagA-B-RA | 110..1024 | 19..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:40:03 Download gff for
BO07805.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8983116..8983551 | 19..454 | 100 | <- | Plus |
3R | 8983613..8983997 | 455..839 | 100 | <- | Plus |
3R | 8984055..8984148 | 840..932 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:57:09 Download gff for
BO07805.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4809777..4809870 | 840..932 | 98 | | Plus |
arm_3R | 4808838..4809273 | 19..454 | 100 | <- | Plus |
arm_3R | 4809335..4809719 | 455..839 | 100 | <- | Plus |
BO07805.5prime Sequence
867 bp (728 high quality bases) assembled on 2006-01-06
> BO07805.5prime
GAAGTTATCAGTCGACATGAAGAAAAAGGTGTTACTGATGGGGAAGAGCG
GATCCGGAAAGACCAGCATGCGCTCCATTATCTTTGCTAACTATATCGCC
CGTGATACGACACGCCTCGGAGCAACAATCGATGTGGAGCACTCCCATGT
GCGGTTTCTGGGCAACCTGGTGCTTAATCTCTGGGACTGTGGCGGTCAGG
AGGGCTTCATGAAGCAGTACTTTGCCCAGCAGCGAGACAACATCTTTCGT
AATGTGGAAGTGCTGATTTATGTGTTTGATGTGGAGAGCCAGGAGATAGA
GCGCGACATCCATTACTACCAGAGCTGCCTGGAGGCACTGCTGCAGAATT
CGCCTGAGGCCAAGATATTCTGTCTGGTGCACAAAATGGACCTGGTGCCG
GAAGGCTTGCGCGAGAGTGTGTTTACTGAGCGCATGGAGGATCTCATAAA
ATTATCAAAGCCCGGAAATGTCACCTGTTTCCGTACCAGCATTTGGGATG
AAACATTATACAAAGCCTGGTCTTCCATTGTCACGATGCTGATACCAAAT
GTTGCCGCCCTGGAGAACTCTGTGACACATTTCGGAAATGTAATTGAGGC
GGACGAGGTGCTGTTGTTCGAAAAGGCTACCTTTTTGGTGATCTCCCATT
GCCAGAGCAAGAAGAACCGCGACTCGCACCGCTTTGAAAAGGTGTCCAAC
ATCATCAAGCAGTTCAAGCTGAGCTGTTCGAAGTTGGGCGCTAAGTTCCA
ATCGATGGAGGTGCGCAATAGCGCATTTGCCGCTTTCATTGACACCTTCA
CCAGCAACACCTACGTGATGGTGGTCATGTCGGATCCCACGCTGCCCTCG
GAGGCTACGCTAGTCAA
BO07805.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11968-PA | 936 | CG11968-RA | 1..851 | 17..867 | 4255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:58:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RagA-B-RA | 1408 | CG11968-RA | 92..942 | 17..867 | 4255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:58:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8983613..8983997 | 513..129 | 1925 | 100 | Minus |
3R | 32079331 | 3R | 8983198..8983551 | 867..514 | 1770 | 100 | Minus |
3R | 32079331 | 3R | 8984055..8984156 | 128..27 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:58:42 has no hits.
BO07805.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:39 Download gff for
BO07805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11968-PA | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:26 Download gff for
BO07805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11968-PA | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:08:10 Download gff for
BO07805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RagA-B-RA | 84..932 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:29:31 Download gff for
BO07805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RagA-B-RA | 92..940 | 17..865 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:29:31 Download gff for
BO07805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8983200..8983551 | 514..865 | 100 | <- | Minus |
3R | 8983613..8983997 | 129..513 | 100 | <- | Minus |
3R | 8984055..8984154 | 29..128 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:08:10 Download gff for
BO07805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4808922..4809273 | 514..865 | 100 | <- | Minus |
arm_3R | 4809335..4809719 | 129..513 | 100 | <- | Minus |
arm_3R | 4809777..4809876 | 29..128 | 100 | <- | Minus |
BO07805.complete Sequence
967 bp (967 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630938
> BO07805.complete
GAAGTTATCAGTCGACATGAAGAAAAAGGTGTTACTGATGGGGAAGAGCG
GATCCGGAAAGACCAGCATGCGCTCCATTATCTTTGCTAACTATATCGCC
CGTGATACGACACGCCTCGGAGCAACAATCGATGTGGAGCACTCCCATGT
GCGGTTTCTGGGCAACCTGGTGCTTAATCTCTGGGACTGTGGCGGTCAGG
AGGGCTTCATGAAGCAGTACTTTGCCCAGCAGCGAGACAACATCTTTCGT
AATGTGGAAGTGCTGATTTATGTGTTTGATGTGGAGAGCCAGGAGATAGA
GCGCGACATCCATTACTACCAGAGCTGCCTGGAGGCACTGCTGCAGAATT
CGCCTGAGGCCAAGATATTCTGTCTGGTGCACAAAATGGACCTGGTGCCG
GAAGGCTTGCGCGAGAGTGTGTTTACTGAGCGCATGGAGGATCTCATAAA
ATTATCAAAGCCCGGAAATGTCACCTGTTTCCGTACCAGCATTTGGGATG
AAACATTATACAAAGCCTGGTCTTCCATTGTCACGATGCTGATACCAAAT
GTTGCCGCCCTGGAGAACTCTGTGACACATTTCGGAAATGTAATTGAGGC
GGACGAGGTGCTGTTGTTCGAAAAGGCTACCTTTTTGGTGATCTCCCATT
GCCAGAGCAAGAAGAACCGCGACTCGCACCGCTTTGAAAAGGTGTCCAAC
ATCATCAAGCAGTTCAAGCTGAGCTGTTCGAAGTTGGGCGCTAAGTTCCA
ATCGATGGAGGTGCGCAATAGCGCATTTGCCGCTTTCATTGACACCTTCA
CCAGCAACACCTACGTGATGGTGGTCATGTCGGATCCCACGCTGCCCTCG
GAGGCTACGCTAGTCAACATAAGGAACGCTCGGAAGTACTTTGAGGAGCT
GGAAAATCCAAGCAACAGTGCCATTAACCATCATGGCCAAAGGTACCATG
CAAGCTTTCTAGACCAT
BO07805.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:23:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RagA-B-RA | 936 | CG11968-PA | 1..933 | 17..949 | 4665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:23:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RagA-B-RA | 1408 | CG11968-RA | 92..1024 | 17..949 | 4665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:23:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8983116..8983551 | 949..514 | 2180 | 100 | Minus |
3R | 32079331 | 3R | 8983613..8983997 | 513..129 | 1925 | 100 | Minus |
3R | 32079331 | 3R | 8984055..8984156 | 128..27 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:23:52 has no hits.
BO07805.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:36 Download gff for
BO07805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11968-RA | 1..936 | 17..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:11 Download gff for
BO07805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11968-RA | 84..1016 | 17..949 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:40:29 Download gff for
BO07805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RagA-B-RA | 84..1016 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:36 Download gff for
BO07805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11968-RA | 84..1016 | 17..949 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:44 Download gff for
BO07805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RagA-B-RA | 92..1024 | 17..951 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:44 Download gff for
BO07805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8983113..8983551 | 514..951 | 99 | <- | Minus |
3R | 8983613..8983997 | 129..513 | 100 | <- | Minus |
3R | 8984055..8984154 | 29..128 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:40:29 Download gff for
BO07805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4808835..4809273 | 514..951 | 99 | <- | Minus |
arm_3R | 4809335..4809719 | 129..513 | 100 | <- | Minus |
arm_3R | 4809777..4809876 | 29..128 | 100 | <- | Minus |
BO07805.pep Sequence
Translation from 16 to 967
> BO07805.pep
MKKKVLLMGKSGSGKTSMRSIIFANYIARDTTRLGATIDVEHSHVRFLGN
LVLNLWDCGGQEGFMKQYFAQQRDNIFRNVEVLIYVFDVESQEIERDIHY
YQSCLEALLQNSPEAKIFCLVHKMDLVPEGLRESVFTERMEDLIKLSKPG
NVTCFRTSIWDETLYKAWSSIVTMLIPNVAALENSVTHFGNVIEADEVLL
FEKATFLVISHCQSKKNRDSHRFEKVSNIIKQFKLSCSKLGAKFQSMEVR
NSAFAAFIDTFTSNTYVMVVMSDPTLPSEATLVNIRNARKYFEELENPSN
SAINHHGQRYHASFLDH
BO07805.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RagA-B-PA | 311 | CG11968-PA | 1..311 | 1..311 | 1607 | 100 | Plus |