Clone BO07805 Report

Search the DGRC for BO07805

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:78
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptRagA-RA
Protein status:BO07805.pep: validated full length
Sequenced Size:967

Clone Sequence Records

BO07805.3prime Sequence

932 bp (883 high quality bases) assembled on 2006-01-06

> BO07805.3prime
ATGGTCTAGAAAGCTTGCATGGTACCTTTGGCCATGATGGTTAATGGCAC
TGTTGCTTGGATTTTCCAGCTCCTCAAAGTACTTCCGAGCGTTCCTTATG
TTGACTAGCGTAGCCTCCGAGGGCAGCGTGGGATCCGACATGACCACCAT
CACGTAGGTGTTGCTGGTGAAGGTGTCAATGAAAGCGGCAAATGCGCTAT
TGCGCACCTCCATCGATTGGAACTTAGCGCCCAACTTCGAACAGCTCAGC
TTGAACTGCTTGATGATGTTGGACACCTTTTCAAAGCGGTGCGAGTCGCG
GTTCTTCTTGCTCTGGCAATGGGAGATCACCAAAAAGGTAGCCTTTTCGA
ACAACAGCACCTCGTCCGCCTCAATTACATTTCCGAAATGTGTCACAGAG
TTCTCCAGGGCGGCAACATTTGGTATCAGCATCGTGACAATGGAAGACCA
GGCTTTGTATAATGTTTCATCCCAAATGCTGGTACGGAAACAGGTGACAT
TTCCGGGCTTTGATAATTTTATGAGATCCTCCATGCGCTCAGTAAACACA
CTCTCGCGCAAGCCTTCCGGCACCAGGTCCATTTTGTGCACCAGACAGAA
TATCTTGGCCTCAGGCGAATTCTGCAGCAGTGCCTCCAGGCAGCTCTGGT
AGTAATGGATGTCGCGCTCTATCTCCTGGCTCTCCACATCAAACACATAA
ATCAGCACTTCCACATTACGAAAGATGTTGTCTCGCTGCTGGGCAAAGTA
CTGCTTCATGAAGCCCTCCTGACCGCCACAGTCCCAGAGATTAAGCACCA
GGTTGCCCAGAAACCGCACATGGGAGTGCTCCACATCGATTGTTGCTCCG
AGGCGTGTCGTATCACGGGCGATATAGTTAGCAAAGATAATGGAGCGCAT
GCTGGTCTTTCCGGATCCGCTCTTCCCATCAG

BO07805.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG11968-PA 936 CG11968-RA 25..933 927..19 4545 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
RagA-B-RA 1408 CG11968-RA 110..1024 932..19 4550 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:00:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8983116..8983551 19..454 2180 100 Plus
3R 32079331 3R 8983613..8983997 455..839 1925 100 Plus
3R 32079331 3R 8984055..8984142 840..927 440 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:00:14 has no hits.

BO07805.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:37 Download gff for BO07805.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11968-PA 19..936 16..932 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:25 Download gff for BO07805.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11968-PA 19..936 16..932 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:57:09 Download gff for BO07805.3prime
Subject Subject Range Query Range Percent Splice Strand
RagA-B-RA 102..1016 19..932 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:40:03 Download gff for BO07805.3prime
Subject Subject Range Query Range Percent Splice Strand
RagA-B-RA 110..1024 19..932 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:40:03 Download gff for BO07805.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8983116..8983551 19..454 100 <- Plus
3R 8983613..8983997 455..839 100 <- Plus
3R 8984055..8984148 840..932 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:57:09 Download gff for BO07805.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4809777..4809870 840..932 98   Plus
arm_3R 4808838..4809273 19..454 100 <- Plus
arm_3R 4809335..4809719 455..839 100 <- Plus

BO07805.5prime Sequence

867 bp (728 high quality bases) assembled on 2006-01-06

> BO07805.5prime
GAAGTTATCAGTCGACATGAAGAAAAAGGTGTTACTGATGGGGAAGAGCG
GATCCGGAAAGACCAGCATGCGCTCCATTATCTTTGCTAACTATATCGCC
CGTGATACGACACGCCTCGGAGCAACAATCGATGTGGAGCACTCCCATGT
GCGGTTTCTGGGCAACCTGGTGCTTAATCTCTGGGACTGTGGCGGTCAGG
AGGGCTTCATGAAGCAGTACTTTGCCCAGCAGCGAGACAACATCTTTCGT
AATGTGGAAGTGCTGATTTATGTGTTTGATGTGGAGAGCCAGGAGATAGA
GCGCGACATCCATTACTACCAGAGCTGCCTGGAGGCACTGCTGCAGAATT
CGCCTGAGGCCAAGATATTCTGTCTGGTGCACAAAATGGACCTGGTGCCG
GAAGGCTTGCGCGAGAGTGTGTTTACTGAGCGCATGGAGGATCTCATAAA
ATTATCAAAGCCCGGAAATGTCACCTGTTTCCGTACCAGCATTTGGGATG
AAACATTATACAAAGCCTGGTCTTCCATTGTCACGATGCTGATACCAAAT
GTTGCCGCCCTGGAGAACTCTGTGACACATTTCGGAAATGTAATTGAGGC
GGACGAGGTGCTGTTGTTCGAAAAGGCTACCTTTTTGGTGATCTCCCATT
GCCAGAGCAAGAAGAACCGCGACTCGCACCGCTTTGAAAAGGTGTCCAAC
ATCATCAAGCAGTTCAAGCTGAGCTGTTCGAAGTTGGGCGCTAAGTTCCA
ATCGATGGAGGTGCGCAATAGCGCATTTGCCGCTTTCATTGACACCTTCA
CCAGCAACACCTACGTGATGGTGGTCATGTCGGATCCCACGCTGCCCTCG
GAGGCTACGCTAGTCAA

BO07805.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG11968-PA 936 CG11968-RA 1..851 17..867 4255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
RagA-B-RA 1408 CG11968-RA 92..942 17..867 4255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:58:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8983613..8983997 513..129 1925 100 Minus
3R 32079331 3R 8983198..8983551 867..514 1770 100 Minus
3R 32079331 3R 8984055..8984156 128..27 510 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:58:42 has no hits.

BO07805.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:39 Download gff for BO07805.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11968-PA 1..849 17..865 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:26 Download gff for BO07805.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11968-PA 1..849 17..865 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:08:10 Download gff for BO07805.5prime
Subject Subject Range Query Range Percent Splice Strand
RagA-B-RA 84..932 17..865 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:29:31 Download gff for BO07805.5prime
Subject Subject Range Query Range Percent Splice Strand
RagA-B-RA 92..940 17..865 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:29:31 Download gff for BO07805.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8983200..8983551 514..865 100 <- Minus
3R 8983613..8983997 129..513 100 <- Minus
3R 8984055..8984154 29..128 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:08:10 Download gff for BO07805.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4808922..4809273 514..865 100 <- Minus
arm_3R 4809335..4809719 129..513 100 <- Minus
arm_3R 4809777..4809876 29..128 100 <- Minus

BO07805.complete Sequence

967 bp (967 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630938

> BO07805.complete
GAAGTTATCAGTCGACATGAAGAAAAAGGTGTTACTGATGGGGAAGAGCG
GATCCGGAAAGACCAGCATGCGCTCCATTATCTTTGCTAACTATATCGCC
CGTGATACGACACGCCTCGGAGCAACAATCGATGTGGAGCACTCCCATGT
GCGGTTTCTGGGCAACCTGGTGCTTAATCTCTGGGACTGTGGCGGTCAGG
AGGGCTTCATGAAGCAGTACTTTGCCCAGCAGCGAGACAACATCTTTCGT
AATGTGGAAGTGCTGATTTATGTGTTTGATGTGGAGAGCCAGGAGATAGA
GCGCGACATCCATTACTACCAGAGCTGCCTGGAGGCACTGCTGCAGAATT
CGCCTGAGGCCAAGATATTCTGTCTGGTGCACAAAATGGACCTGGTGCCG
GAAGGCTTGCGCGAGAGTGTGTTTACTGAGCGCATGGAGGATCTCATAAA
ATTATCAAAGCCCGGAAATGTCACCTGTTTCCGTACCAGCATTTGGGATG
AAACATTATACAAAGCCTGGTCTTCCATTGTCACGATGCTGATACCAAAT
GTTGCCGCCCTGGAGAACTCTGTGACACATTTCGGAAATGTAATTGAGGC
GGACGAGGTGCTGTTGTTCGAAAAGGCTACCTTTTTGGTGATCTCCCATT
GCCAGAGCAAGAAGAACCGCGACTCGCACCGCTTTGAAAAGGTGTCCAAC
ATCATCAAGCAGTTCAAGCTGAGCTGTTCGAAGTTGGGCGCTAAGTTCCA
ATCGATGGAGGTGCGCAATAGCGCATTTGCCGCTTTCATTGACACCTTCA
CCAGCAACACCTACGTGATGGTGGTCATGTCGGATCCCACGCTGCCCTCG
GAGGCTACGCTAGTCAACATAAGGAACGCTCGGAAGTACTTTGAGGAGCT
GGAAAATCCAAGCAACAGTGCCATTAACCATCATGGCCAAAGGTACCATG
CAAGCTTTCTAGACCAT

BO07805.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
RagA-B-RA 936 CG11968-PA 1..933 17..949 4665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
RagA-B-RA 1408 CG11968-RA 92..1024 17..949 4665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:23:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8983116..8983551 949..514 2180 100 Minus
3R 32079331 3R 8983613..8983997 513..129 1925 100 Minus
3R 32079331 3R 8984055..8984156 128..27 510 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:23:52 has no hits.

BO07805.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:36 Download gff for BO07805.complete
Subject Subject Range Query Range Percent Splice Strand
CG11968-RA 1..936 17..952 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:11 Download gff for BO07805.complete
Subject Subject Range Query Range Percent Splice Strand
CG11968-RA 84..1016 17..949 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:40:29 Download gff for BO07805.complete
Subject Subject Range Query Range Percent Splice Strand
RagA-B-RA 84..1016 17..951 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:36 Download gff for BO07805.complete
Subject Subject Range Query Range Percent Splice Strand
CG11968-RA 84..1016 17..949 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:44 Download gff for BO07805.complete
Subject Subject Range Query Range Percent Splice Strand
RagA-B-RA 92..1024 17..951 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:44 Download gff for BO07805.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8983113..8983551 514..951 99 <- Minus
3R 8983613..8983997 129..513 100 <- Minus
3R 8984055..8984154 29..128 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:40:29 Download gff for BO07805.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4808835..4809273 514..951 99 <- Minus
arm_3R 4809335..4809719 129..513 100 <- Minus
arm_3R 4809777..4809876 29..128 100 <- Minus

BO07805.pep Sequence

Translation from 16 to 967

> BO07805.pep
MKKKVLLMGKSGSGKTSMRSIIFANYIARDTTRLGATIDVEHSHVRFLGN
LVLNLWDCGGQEGFMKQYFAQQRDNIFRNVEVLIYVFDVESQEIERDIHY
YQSCLEALLQNSPEAKIFCLVHKMDLVPEGLRESVFTERMEDLIKLSKPG
NVTCFRTSIWDETLYKAWSSIVTMLIPNVAALENSVTHFGNVIEADEVLL
FEKATFLVISHCQSKKNRDSHRFEKVSNIIKQFKLSCSKLGAKFQSMEVR
NSAFAAFIDTFTSNTYVMVVMSDPTLPSEATLVNIRNARKYFEELENPSN
SAINHHGQRYHASFLDH

BO07805.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
RagA-B-PA 311 CG11968-PA 1..311 1..311 1607 100 Plus