Clone BO07807 Report

Search the DGRC for BO07807

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:78
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG9162-RA
Protein status:BO07807.pep: validated full length
Sequenced Size:403

Clone Sequence Records

BO07807.3prime Sequence

401 bp (400 high quality bases) assembled on 2006-01-06

> BO07807.3prime
ATGGTCTAGAAAGCTTGCTTGACCGCCAACACGTGCATCGCAAACCATTG
CACGTCCTCTTCCATTTGCAATGGACATCGGATGTCGAAAACCCGTGCAC
TGCCTCCCCACATTACACGTTGCATTTATCGCCTGCACATGCTGGCTGCA
CCCCTCCCCCACACCACTTCGCTCGCTCACACTCCGTCGCCCAACTATAG
AACGGCTTATAATAGCTAGACAGCACTTCCCGGCACTCCGCCTCTCTGCA
TCCATGCTTCTCTGCAGTTGTTGCGGTCTTGCCGCCTGATTTTTCGATTT
TCCGCTGTTTGCCTTTCTGCTGCGCGTGGCCTGCACTTGTGTGTGTGCGT
GAGTGAGTGAATGAGTGTGTGCTCTCTTCTTCTTCATGTCGACTGATAAC
T

BO07807.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG9162-PA 372 CG9162-RA 1..369 387..19 1845 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 04:00:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6078800..6079168 387..19 1845 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:00:23 has no hits.

BO07807.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:39 Download gff for BO07807.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9162-PA 1..372 16..387 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:28 Download gff for BO07807.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9162-PA 1..372 16..387 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:40:31 Download gff for BO07807.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6078800..6079172 15..387 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:40:31 Download gff for BO07807.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6078800..6079172 15..387 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:57:12 Download gff for BO07807.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6078800..6079172 15..387 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:57:12 Download gff for BO07807.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6078800..6079172 15..387 99   Minus

BO07807.5prime Sequence

401 bp (400 high quality bases) assembled on 2006-01-06

> BO07807.5prime
GAAGTTATCAGTCGACATGAAGAAGAAGAGAGCACACACTCATTCACTCA
CTCACGCACACACACAAGTGCAGGCCACGCGCAGCAGAAAGGCAAACAGC
GGAAAATCGAAAAATCAGGCGGCAAGACCGCAACAACTGCAGAGAAGCAT
GGATGCAGAGAGGCGGAGTGCCGGGAAGTGCTGTCTAGCTATTATAAGCC
GTTCTATAGTTGGGCGACGGAGTGTGAGCGAGCGAAGTGGTGTGGGGGAG
GGGTGCAGCCAGCATGTGCAGGCGATAAATGCAACGTGTAATGTGGGGAG
GCAGTGCACGGGTTTTCGACATCCGATGTCCATTGCAAATGGAAGAGGAC
GTGCAATGGTTTGCGATGCACGTGTTGGCGGTCAAGCAAGCTTTCTAGAC
C

BO07807.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9162-PA 372 CG9162-RA 1..369 17..385 1845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-13 16:29:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6078800..6079168 17..385 1845 100 Plus
Blast to na_te.dros performed on 2015-02-13 16:29:09 has no hits.

BO07807.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:40 Download gff for BO07807.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9162-PA 1..372 17..388 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:29 Download gff for BO07807.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9162-PA 1..372 17..388 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:07:02 Download gff for BO07807.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6078800..6079172 17..389 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:07:02 Download gff for BO07807.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6078800..6079172 17..389 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:12:49 Download gff for BO07807.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6078800..6079172 17..389 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:12:49 Download gff for BO07807.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6078800..6079172 17..389 99   Plus

BO07807.complete Sequence

403 bp (403 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630939

> BO07807.complete
GAAGTTATCAGTCGACATGAAGAAGAAGAGAGCACACACTCATTCACTCA
CTCACGCACACACACAAGTGCAGGCCACGCGCAGCAGAAAGGCAAACAGC
GGAAAATCGAAAAATCAGGCGGCAAGACCGCAACAACTGCAGAGAAGCAT
GGATGCAGAGAGGCGGAGTGCCGGGAAGTGCTGTCTAGCTATTATAAGCC
GTTCTATAGTTGGGCGACGGAGTGTGAGCGAGCGAAGTGGTGTGGGGGAG
GGGTGCAGCCAGCATGTGCAGGCGATAAATGCAACGTGTAATGTGGGGAG
GCAGTGCACGGGTTTTCGACATCCGATGTCCATTGCAAATGGAAGAGGAC
GTGCAATGGTTTGCGATGCACGTGTTGGCGGTCAAGCAAGCTTTCTAGAC
CAT

BO07807.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 10:26:08 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 10:26:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6078800..6079168 17..385 1845 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:26:07 has no hits.

BO07807.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:02 Download gff for BO07807.complete
Subject Subject Range Query Range Percent Splice Strand
CG9162-RA 1..372 17..388 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:06:57 Download gff for BO07807.complete
Subject Subject Range Query Range Percent Splice Strand
CG9162-RA 303..675 17..389 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:02 Download gff for BO07807.complete
Subject Subject Range Query Range Percent Splice Strand
CG9162-RA 303..675 17..389 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:47 Download gff for BO07807.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6078800..6079168 17..387 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:47 Download gff for BO07807.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6078800..6079168 17..387 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:25 Download gff for BO07807.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6078800..6079168 17..387 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:25 Download gff for BO07807.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6078800..6079168 17..387 99   Plus

BO07807.pep Sequence

Translation from 16 to 403

> BO07807.pep
MKKKRAHTHSLTHAHTQVQATRSRKANSGKSKNQAARPQQLQRSMDAERR
SAGKCCLAIISRSIVGRRSVSERSGVGEGCSQHVQAINATCNVGRQCTGF
RHPMSIANGRGRAMVCDARVGGQASFLDH
Sequence BO07807.pep has no blast hits.