Clone Sequence Records
BO07810.3prime Sequence
461 bp (460 high quality bases) assembled on 2006-01-06
> BO07810.3prime
ATGGTCTAGAAAGCTTGCGTCGAACAGAACGTCCATCGGTATGCCATAAA
TCTCGGCCAGCTGCAGTTTGGTGTAGGCAACAACGCCGCTGGGACAGTAG
GCCATCGCCTCCTCCAGAGTGACCCACTTGGAGCTTGACTCACCGGCACA
TACCACATGCAGATAGACGATACCATCGAACATCTCATGGCTGATGATGC
CCATCAGGTTGCTGGGGGTGCCGCTACTGACGTTTCCGGCGGTGTTGCCA
CTACCGTTACCATCACCGTTACCGTTACCGTTTCCGCTTCCGCTTCCGTT
TCCGCCAATGATGTTGCCGCTCTGGCTCCCAGCGCTGCTCATTCCATCGC
CGTTGCCACCGTCGCTGCCGCCACCGCTGCCGCCACCCACGCTGCTACCG
CTGGCATTGGCGTTCGAAGAGGTGGACGGATTCAGATTGATGACCATGTC
GACTGATAACT
BO07810.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9106-PA | 432 | CG9106-RA | 1..429 | 447..19 | 2145 | 100 | Minus |
CG9106-PB | 432 | CG9106-RB | 1..429 | 447..19 | 2145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:03:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9106-RB | 1298 | CG9106-RB | 504..932 | 447..19 | 2145 | 100 | Minus |
CG9106-RA | 1240 | CG9106-RA | 446..874 | 447..19 | 2145 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:03:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15271402..15271830 | 19..447 | 2145 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 16:03:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 620..717 | 284..384 | 165 | 64.4 | Plus |
TART-A | 13424 | TART-A 13424bp | 11098..11129 | 403..372 | 115 | 84.4 | Minus |
BO07810.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:43 Download gff for
BO07810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9106-PB | 1..432 | 16..447 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:34 Download gff for
BO07810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9106-PB | 1..432 | 16..447 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:08:59 Download gff for
BO07810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9106-RA | 442..874 | 19..455 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:34:15 Download gff for
BO07810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9106-RA | 442..874 | 19..455 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:34:15 Download gff for
BO07810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15271402..15271834 | 19..455 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:08:59 Download gff for
BO07810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15165435..15165867 | 19..455 | 99 | | Plus |
BO07810.5prime Sequence
461 bp (460 high quality bases) assembled on 2006-01-06
> BO07810.5prime
GAAGTTATCAGTCGACATGGTCATCAATCTGAATCCGTCCACCTCTTCGA
ACGCCAATGCCAGCGGTAGCAGCGTGGGTGGCGGCAGCGGTGGCGGCAGC
GACGGTGGCAACGGCGATGGAATGAGCAGCGCTGGGAGCCAGAGCGGCAA
CATCATTGGCGGAAACGGAAGCGGAAGCGGAAACGGTAACGGTAACGGTG
ATGGTAACGGTAGTGGCAACACCGCCGGAAACGTCAGTAGCGGCACCCCC
AGCAACCTGATGGGCATCATCAGCCATGAGATGTTCGATGGTATCGTCTA
TCTGCATGTGGTATGTGCCGGTGAGTCAAGCTCCAAGTGGGTCACTCTGG
AGGAGGCGATGGCCTACTGTCCCAGCGGCGTTGTTGCCTACACCAAACTG
CAGCTGGCCGAGATTTATGGCATACCGATGGACGTTCTGTTCGACGCAAG
CTTTCTAGACC
BO07810.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9106-PA | 432 | CG9106-RA | 1..429 | 17..445 | 2145 | 100 | Plus |
CG9106-PB | 432 | CG9106-RB | 1..429 | 17..445 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:05:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9106-RB | 1298 | CG9106-RB | 504..932 | 17..445 | 2145 | 100 | Plus |
CG9106-RA | 1240 | CG9106-RA | 446..874 | 17..445 | 2145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:05:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15271402..15271830 | 445..17 | 2145 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 10:05:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 620..717 | 180..80 | 165 | 64.4 | Minus |
TART-A | 13424 | TART-A 13424bp | 11098..11129 | 61..92 | 115 | 84.4 | Plus |
BO07810.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:44 Download gff for
BO07810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9106-PB | 1..432 | 17..448 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:34 Download gff for
BO07810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9106-PB | 1..432 | 17..448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:46:30 Download gff for
BO07810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9106-RA | 442..874 | 9..445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:03:53 Download gff for
BO07810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9106-RA | 442..874 | 9..445 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:03:53 Download gff for
BO07810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15271402..15271834 | 9..445 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:46:30 Download gff for
BO07810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15165435..15165867 | 9..445 | 99 | | Minus |
BO07810.complete Sequence
463 bp (463 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630940
> BO07810.complete
GAAGTTATCAGTCGACATGGTCATCAATCTGAATCCGTCCACCTCTTCGA
ACGCCAATGCCAGCGGTAGCAGCGTGGGTGGCGGCAGCGGTGGCGGCAGC
GACGGTGGCAACGGCGATGGAATGAGCAGCGCTGGGAGCCAGAGCGGCAA
CATCATTGGCGGAAACGGAAGCGGAAGCGGAAACGGTAACGGTAACGGTG
ATGGTAACGGTAGTGGCAACACCGCCGGAAACGTCAGTAGCGGCACCCCC
AGCAACCTGATGGGCATCATCAGCCATGAGATGTTCGATGGTATCGTCTA
TCTGCATGTGGTATGTGCCGGTGAGTCAAGCTCCAAGTGGGTCACTCTGG
AGGAGGCGATGGCCTACTGTCCCAGCGGCGTTGTTGCCTACACCAAACTG
CAGCTGGCCGAGATTTATGGCATACCGATGGACGTTCTGTTCGACGCAAG
CTTTCTAGACCAT
BO07810.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:50:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9106-RB | 432 | CG9106-PB | 1..429 | 17..445 | 2145 | 100 | Plus |
CG9106-RA | 432 | CG9106-PA | 1..429 | 17..445 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9106-RB | 1298 | CG9106-RB | 504..932 | 17..445 | 2145 | 100 | Plus |
CG9106-RA | 1240 | CG9106-RA | 446..874 | 17..445 | 2145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:50:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15271402..15271830 | 445..17 | 2145 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:50:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 620..717 | 180..80 | 165 | 64.4 | Minus |
TART-A | 13424 | TART-A 13424bp | 11098..11129 | 61..92 | 115 | 84.4 | Plus |
BO07810.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:37 Download gff for
BO07810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9106-RB | 1..432 | 17..448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:44 Download gff for
BO07810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9106-RA | 442..874 | 9..445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:54 Download gff for
BO07810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9106-RA | 446..874 | 17..447 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:37 Download gff for
BO07810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9106-RA | 442..874 | 9..445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:56 Download gff for
BO07810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9106-RA | 446..874 | 17..447 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:56 Download gff for
BO07810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15271399..15271830 | 17..447 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:54 Download gff for
BO07810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15165432..15165863 | 17..447 | 99 | | Minus |
BO07810.pep Sequence
Translation from 16 to 463
> BO07810.pep
MVINLNPSTSSNANASGSSVGGGSGGGSDGGNGDGMSSAGSQSGNIIGGN
GSGSGNGNGNGDGNGSGNTAGNVSSGTPSNLMGIISHEMFDGIVYLHVVC
AGESSSKWVTLEEAMAYCPSGVVAYTKLQLAEIYGIPMDVLFDASFLDH
BO07810.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9106-PB | 143 | CG9106-PB | 1..143 | 1..143 | 747 | 100 | Plus |
CG9106-PA | 143 | CG9106-PA | 1..143 | 1..143 | 747 | 100 | Plus |
Cpr11A-PA | 270 | CG2560-PA | 192..265 | 8..81 | 144 | 45.3 | Plus |