Clone BO07810 Report

Search the DGRC for BO07810

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:78
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG9106-RA
Protein status:BO07810.pep: validated full length
Sequenced Size:463

Clone Sequence Records

BO07810.3prime Sequence

461 bp (460 high quality bases) assembled on 2006-01-06

> BO07810.3prime
ATGGTCTAGAAAGCTTGCGTCGAACAGAACGTCCATCGGTATGCCATAAA
TCTCGGCCAGCTGCAGTTTGGTGTAGGCAACAACGCCGCTGGGACAGTAG
GCCATCGCCTCCTCCAGAGTGACCCACTTGGAGCTTGACTCACCGGCACA
TACCACATGCAGATAGACGATACCATCGAACATCTCATGGCTGATGATGC
CCATCAGGTTGCTGGGGGTGCCGCTACTGACGTTTCCGGCGGTGTTGCCA
CTACCGTTACCATCACCGTTACCGTTACCGTTTCCGCTTCCGCTTCCGTT
TCCGCCAATGATGTTGCCGCTCTGGCTCCCAGCGCTGCTCATTCCATCGC
CGTTGCCACCGTCGCTGCCGCCACCGCTGCCGCCACCCACGCTGCTACCG
CTGGCATTGGCGTTCGAAGAGGTGGACGGATTCAGATTGATGACCATGTC
GACTGATAACT

BO07810.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG9106-PA 432 CG9106-RA 1..429 447..19 2145 100 Minus
CG9106-PB 432 CG9106-RB 1..429 447..19 2145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9106-RB 1298 CG9106-RB 504..932 447..19 2145 100 Minus
CG9106-RA 1240 CG9106-RA 446..874 447..19 2145 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:03:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15271402..15271830 19..447 2145 100 Plus
Blast to na_te.dros performed 2015-02-10 16:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 620..717 284..384 165 64.4 Plus
TART-A 13424 TART-A 13424bp 11098..11129 403..372 115 84.4 Minus

BO07810.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:43 Download gff for BO07810.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9106-PB 1..432 16..447 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:34 Download gff for BO07810.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9106-PB 1..432 16..447 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:08:59 Download gff for BO07810.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9106-RA 442..874 19..455 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:34:15 Download gff for BO07810.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9106-RA 442..874 19..455 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:34:15 Download gff for BO07810.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15271402..15271834 19..455 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:08:59 Download gff for BO07810.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15165435..15165867 19..455 99   Plus

BO07810.5prime Sequence

461 bp (460 high quality bases) assembled on 2006-01-06

> BO07810.5prime
GAAGTTATCAGTCGACATGGTCATCAATCTGAATCCGTCCACCTCTTCGA
ACGCCAATGCCAGCGGTAGCAGCGTGGGTGGCGGCAGCGGTGGCGGCAGC
GACGGTGGCAACGGCGATGGAATGAGCAGCGCTGGGAGCCAGAGCGGCAA
CATCATTGGCGGAAACGGAAGCGGAAGCGGAAACGGTAACGGTAACGGTG
ATGGTAACGGTAGTGGCAACACCGCCGGAAACGTCAGTAGCGGCACCCCC
AGCAACCTGATGGGCATCATCAGCCATGAGATGTTCGATGGTATCGTCTA
TCTGCATGTGGTATGTGCCGGTGAGTCAAGCTCCAAGTGGGTCACTCTGG
AGGAGGCGATGGCCTACTGTCCCAGCGGCGTTGTTGCCTACACCAAACTG
CAGCTGGCCGAGATTTATGGCATACCGATGGACGTTCTGTTCGACGCAAG
CTTTCTAGACC

BO07810.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:10:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG9106-PA 432 CG9106-RA 1..429 17..445 2145 100 Plus
CG9106-PB 432 CG9106-RB 1..429 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9106-RB 1298 CG9106-RB 504..932 17..445 2145 100 Plus
CG9106-RA 1240 CG9106-RA 446..874 17..445 2145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15271402..15271830 445..17 2145 100 Minus
Blast to na_te.dros performed 2015-02-12 10:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 620..717 180..80 165 64.4 Minus
TART-A 13424 TART-A 13424bp 11098..11129 61..92 115 84.4 Plus

BO07810.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:44 Download gff for BO07810.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9106-PB 1..432 17..448 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:34 Download gff for BO07810.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9106-PB 1..432 17..448 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:46:30 Download gff for BO07810.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9106-RA 442..874 9..445 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:03:53 Download gff for BO07810.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9106-RA 442..874 9..445 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:03:53 Download gff for BO07810.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15271402..15271834 9..445 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:46:30 Download gff for BO07810.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15165435..15165867 9..445 99   Minus

BO07810.complete Sequence

463 bp (463 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630940

> BO07810.complete
GAAGTTATCAGTCGACATGGTCATCAATCTGAATCCGTCCACCTCTTCGA
ACGCCAATGCCAGCGGTAGCAGCGTGGGTGGCGGCAGCGGTGGCGGCAGC
GACGGTGGCAACGGCGATGGAATGAGCAGCGCTGGGAGCCAGAGCGGCAA
CATCATTGGCGGAAACGGAAGCGGAAGCGGAAACGGTAACGGTAACGGTG
ATGGTAACGGTAGTGGCAACACCGCCGGAAACGTCAGTAGCGGCACCCCC
AGCAACCTGATGGGCATCATCAGCCATGAGATGTTCGATGGTATCGTCTA
TCTGCATGTGGTATGTGCCGGTGAGTCAAGCTCCAAGTGGGTCACTCTGG
AGGAGGCGATGGCCTACTGTCCCAGCGGCGTTGTTGCCTACACCAAACTG
CAGCTGGCCGAGATTTATGGCATACCGATGGACGTTCTGTTCGACGCAAG
CTTTCTAGACCAT

BO07810.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:50:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG9106-RB 432 CG9106-PB 1..429 17..445 2145 100 Plus
CG9106-RA 432 CG9106-PA 1..429 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9106-RB 1298 CG9106-RB 504..932 17..445 2145 100 Plus
CG9106-RA 1240 CG9106-RA 446..874 17..445 2145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15271402..15271830 445..17 2145 100 Minus
Blast to na_te.dros performed 2014-11-27 14:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 620..717 180..80 165 64.4 Minus
TART-A 13424 TART-A 13424bp 11098..11129 61..92 115 84.4 Plus

BO07810.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:37 Download gff for BO07810.complete
Subject Subject Range Query Range Percent Splice Strand
CG9106-RB 1..432 17..448 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:44 Download gff for BO07810.complete
Subject Subject Range Query Range Percent Splice Strand
CG9106-RA 442..874 9..445 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:54 Download gff for BO07810.complete
Subject Subject Range Query Range Percent Splice Strand
CG9106-RA 446..874 17..447 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:37 Download gff for BO07810.complete
Subject Subject Range Query Range Percent Splice Strand
CG9106-RA 442..874 9..445 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:56 Download gff for BO07810.complete
Subject Subject Range Query Range Percent Splice Strand
CG9106-RA 446..874 17..447 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:56 Download gff for BO07810.complete
Subject Subject Range Query Range Percent Splice Strand
X 15271399..15271830 17..447 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:54 Download gff for BO07810.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15165432..15165863 17..447 99   Minus

BO07810.pep Sequence

Translation from 16 to 463

> BO07810.pep
MVINLNPSTSSNANASGSSVGGGSGGGSDGGNGDGMSSAGSQSGNIIGGN
GSGSGNGNGNGDGNGSGNTAGNVSSGTPSNLMGIISHEMFDGIVYLHVVC
AGESSSKWVTLEEAMAYCPSGVVAYTKLQLAEIYGIPMDVLFDASFLDH

BO07810.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9106-PB 143 CG9106-PB 1..143 1..143 747 100 Plus
CG9106-PA 143 CG9106-PA 1..143 1..143 747 100 Plus
Cpr11A-PA 270 CG2560-PA 192..265 8..81 144 45.3 Plus