Clone Sequence Records
BO07812.3prime Sequence
932 bp (843 high quality bases) assembled on 2006-01-06
> BO07812.3prime
ATGGTCTAGAAAGCTTGCACACTCACTCTGCGACATGTCAATCTCTTTTT
TCACACTGCGCGATAATCGATCAAGCTCGGCGGCCGCATCTGTGCGCACG
GCCAGCTTTTCGGGCGTCATTACTGCATCCGTACCGTTGGCAGTGCGACC
CGGACCCGCCGGATTACCCGCTCCGCCGGGACCTCCGGTACCCGGACTGC
CCGACTTTTTGTGCAGCAGCGAGTTAAAGAAGTTGGCTAGAACGCCTTCG
GCGCCGGGCGTTGCTGGCGTCAGCTTGGGATCAATCTTTTTGGGCGAACT
CTGTCCGGTGGTGCCGGGCGTTCGGGGTCCGCTCTTATTGCTGCCTACGC
CCTGCGATCGCAGTGGTGACTCACCGCGCACCTGGTCGCCCTGCTTTAGG
ATCTCCTGCTGGCGTGCCAGGAATGCCTGCTCATCCTCCGTCTGCACTTC
CGCCTCGCGATTGGAAACCGCCTTTCTAGTTGGTGGCGATTTGATAATGT
CTGTGTAGGGATTCTCGGCCTTGACTCCATGCATATTCTCGTATAAAATA
CTAATCTTCTTCAGGCTATCCCAGCCAGCCGGAATGAGTACCGCATCCTT
CTCAACGACTAGCGCTGGCGTACGGAATGGTAGACCATAAATTCGATGCG
TCAGATACTTGTAGAGGACATCACAGTTCTTGTCTTCCTTGACGCTCGTG
TAGAAGAGCGAAGTGCCATGCCGCAGGCAGAAGTTACGTATCCACTGCTG
GATGAAGTCAAAGTGCTCGTCACGATACTCGTACTCCTTCTCTAGCGTGG
TCATGTAGTCCGTCTTTGTGACCACAACAACGATGTCGAGGCCCAGATTT
GTAATTAGTGCATCCTCCGTCAGCGGCAGCAGGTCATCCTCGTCGATCGA
GTTGTTGCGCATCGTCCGCTTGACGGGGGAGC
BO07812.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1938-PD | 1482 | Dlic2-RD | 566..1479 | 932..19 | 4570 | 100 | Minus |
| CG1938-PB | 1197 | Dlic2-RB | 281..1194 | 932..19 | 4570 | 100 | Minus |
| CG1938-PA | 1482 | Dlic2-RA | 566..1479 | 932..19 | 4570 | 100 | Minus |
| CG1938-PC | 1482 | Dlic2-RC | 566..1479 | 932..19 | 4570 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:19:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dlic-RA | 2241 | CG1938-RA | 914..1827 | 932..19 | 4570 | 100 | Minus |
| Dlic-RB | 3371 | CG1938-RB | 570..1483 | 932..19 | 4570 | 100 | Minus |
| Dlic-RD | 3715 | CG1938-RD | 914..1827 | 932..19 | 4570 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:19:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11162514..11162782 | 287..19 | 1345 | 100 | Minus |
| X | 23542271 | X | 11161781..11162012 | 815..584 | 1160 | 100 | Minus |
| X | 23542271 | X | 11162267..11162454 | 473..286 | 940 | 100 | Minus |
| X | 23542271 | X | 11161600..11161718 | 932..814 | 595 | 100 | Minus |
| X | 23542271 | X | 11162086..11162198 | 583..471 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:19:43 has no hits.
BO07812.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:47 Download gff for
BO07812.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dlic2-PC | 566..1482 | 16..932 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:39 Download gff for
BO07812.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1938-PC | 566..1482 | 16..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:49:15 Download gff for
BO07812.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dlic-RD | 914..1832 | 13..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:08 Download gff for
BO07812.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dlic-RD | 914..1832 | 13..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:08 Download gff for
BO07812.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11161600..11161718 | 814..932 | 100 | -> | Minus |
| X | 11161783..11162012 | 584..813 | 100 | -> | Minus |
| X | 11162086..11162197 | 472..583 | 100 | -> | Minus |
| X | 11162269..11162454 | 286..471 | 100 | -> | Minus |
| X | 11162516..11162787 | 13..285 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:49:15 Download gff for
BO07812.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11055633..11055751 | 814..932 | 100 | -> | Minus |
| arm_X | 11055816..11056045 | 584..813 | 100 | -> | Minus |
| arm_X | 11056119..11056230 | 472..583 | 100 | -> | Minus |
| arm_X | 11056302..11056487 | 286..471 | 100 | -> | Minus |
| arm_X | 11056549..11056820 | 13..285 | 98 | | Minus |
BO07812.5prime Sequence
885 bp (827 high quality bases) assembled on 2006-01-06
> BO07812.5prime
GAAGTTATCAGTCGACATGGCGATGAACAGTGGGACGCAAACGAATGCGC
TGACATCATCCTTTACCATGAAGAAAAAGGATGCGGCCGCGGAAAAGGAG
AACCTATGGTCGGCGATATTGAATGAAGTACAAACACAGGGCAGCACAAA
ACTTCCATCAAACAAATCTGTACTAGTATTAGGCGACAATGCCACCGGAA
AGACGACACTCATTGCCAAACTGCAGGGCGTCGAGGATCCGAAGAAGGGT
TCCGGCCTGGAGTATGCCTACATTGATGTCAAGGATGAGTACAGAGACGA
CATGACGCGTTTAGGCGTTTGGGTCCTGGACGGTGATCCAGGACACACAA
ACCTGCTACACTATGCGCTCAACGAAACGAACTATGCACACACACTCGTC
ATCCTCACCGTTTCGATGACGCAGCCGTGGGGCTGGCTGGAGCAGCTAAA
CCATTGGATCAAGGTCCTCGGCCAGCACATCGATAGCCTGCAGCTGGACG
CCAAAGAGAAGGAGGCGGCCCGCCAGCGACTGACCACCACGTGGCAGAGC
TACTGTGAGGTGGGCGACGATCTGGATCCAGGCTCCCCCGTCAAGCGGAC
GATGCGCAACAACTCGATCGACGAGGATGACCTGCTGCCGCTGACGGAGG
ATGCACTAATTACAAATCTGGGCCTCGACATCGTTGTTGTGGTCACAAAG
ACGGACTACATGACCACGCTAGAGAAGGAGTACGAGTATCGTGACGAGCA
CTTTGACTTCATCCAGCAGTGGATACGTAACTTCTGCCTGCGGCATGGCA
CTTCGCTCTTCTACACGAGCGTCAAGGAAGACAAGAACTGTGATGTCCTC
TACAAGTATCTGACGCATCGAATTTATGGTCTACC
BO07812.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1938-PD | 1482 | Dlic2-RD | 1..869 | 17..885 | 4345 | 100 | Plus |
| CG1938-PA | 1482 | Dlic2-RA | 1..869 | 17..885 | 4345 | 100 | Plus |
| CG1938-PC | 1482 | Dlic2-RC | 1..869 | 17..885 | 4345 | 100 | Plus |
| CG1938-PB | 1197 | Dlic2-RB | 1..584 | 302..885 | 2920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:40:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dlic-RA | 2241 | CG1938-RA | 347..1217 | 15..885 | 4355 | 100 | Plus |
| Dlic-RD | 3715 | CG1938-RD | 347..1217 | 15..885 | 4355 | 100 | Plus |
| Dlic-RB | 3371 | CG1938-RB | 97..873 | 109..885 | 3885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:40:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11161317..11161718 | 299..700 | 2010 | 100 | Plus |
| X | 23542271 | X | 11161060..11161251 | 108..299 | 960 | 100 | Plus |
| X | 23542271 | X | 11161781..11161967 | 699..885 | 935 | 100 | Plus |
| X | 23542271 | X | 11155135..11155230 | 15..110 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:40:21 has no hits.
BO07812.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:48 Download gff for
BO07812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dlic2-PC | 1..869 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:40 Download gff for
BO07812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1938-PC | 1..869 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:09:01 Download gff for
BO07812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dlic-RD | 342..1217 | 9..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:19:56 Download gff for
BO07812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dlic-RD | 342..1217 | 9..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:19:56 Download gff for
BO07812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11161061..11161251 | 109..299 | 100 | -> | Plus |
| X | 11155130..11155228 | 9..108 | 97 | -> | Plus |
| X | 11161318..11161718 | 300..700 | 100 | -> | Plus |
| X | 11161783..11161967 | 701..885 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:09:01 Download gff for
BO07812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11049163..11049261 | 9..108 | 97 | -> | Plus |
| arm_X | 11055094..11055284 | 109..299 | 100 | -> | Plus |
| arm_X | 11055351..11055751 | 300..700 | 100 | -> | Plus |
| arm_X | 11055816..11056000 | 701..885 | 100 | | Plus |
BO07812.complete Sequence
1513 bp (1513 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630941
> BO07812.complete
GAAGTTATCAGTCGACATGGCGATGAACAGTGGGACGCAAACGAATGCGC
TGACATCATCCTTTACCATGAAGAAAAAGGATGCGGCCGCGGAAAAGGAG
AACCTATGGTCGGCGATATTGAATGAAGTACAAACACAGGGCAGCACAAA
ACTTCCATCAAACAAATCTGTACTAGTATTAGGCGACAATGCCACCGGAA
AGACGACACTCATTGCCAAACTGCAGGGCGTCGAGGATCCGAAGAAGGGT
TCCGGCCTGGAGTATGCCTACATTGATGTCAAGGATGAGTACAGAGACGA
CATGACGCGTTTAGGCGTTTGGGTCCTGGACGGTGATCCAGGACACACAA
ACCTGCTACACTATGCGCTCAACGAAACGAACTATGCACACACACTCGTC
ATCCTCACCGTTTCGATGACGCAGCCGTGGGGCTGGCTGGAGCAGCTAAA
CCATTGGATCAAGGTCCTCGGCCAGCACATCGATAGCCTGCAGCTGGACG
CCAAAGAGAAGGAGGCGGCCCGCCAGCGACTGACCACCACGTGGCAGAGC
TACTGTGAGGTGGGCGACGATCTGGATCCAGGCTCCCCCGTCAAGCGGAC
GATGCGCAACAACTCGATCGACGAGGATGACCTGCTGCCGCTGACGGAGG
ATGCACTAATTACAAATCTGGGCCTCGACATCGTTGTTGTGGTCACAAAG
ACGGACTACATGACCACGCTAGAGAAGGAGTACGAGTATCGTGACGAGCA
CTTTGACTTCATCCAGCAGTGGATACGTAACTTCTGCCTGCGGCATGGCA
CTTCGCTCTTCTACACGAGCGTCAAGGAAGACAAGAACTGTGATGTCCTC
TACAAGTATCTGACGCATCGAATTTATGGTCTACCATTCCGTACGCCAGC
GCTAGTCGTTGAGAAGGATGCGGTACTCATTCCGGCTGGCTGGGATAGCC
TGAAGAAGATTAGTATTTTATACGAGAATATGCATGGAGTCAAGGCCGAG
AATCCCTACACAGACATTATCAAATCGCCACCAACTAGAAAGGCGGTTTC
CAATCGCGAGGCGGAAGTGCAGACGGAGGATGAGCAGGCATTCCTGGCAC
GCCAGCAGGAGATCCTAAAGCAGGGCGACCAGGTGCGCGGTGAGTCACCA
CTGCGATCGCAGGGCGTAGGCAGCAATAAGAGCGGACCCCGAACGCCCGG
CACCACCGGACAGAGTTCGCCCAAAAAGATTGATCCCAAGCTGACGCCAG
CAACGCCCGGCGCCGAAGGCGTTCTAGCCAACTTCTTTAACTCGCTGCTG
CACAAAAAGTCGGGCAGTCCGGGTACCGGAGGTCCCGGCGGAGCGGGTAA
TCCGGCGGGTCCGGGTCGCACTGCCAACGGTACGGATGCAGTAATGACGC
CCGAAAAGCTGGCCGTGCGCACAGATGCGGCCGCCGAGCTTGATCGATTA
TCGCGCAGTGTGAAAAAAGAGATTGACATGTCGCAGAGTGAGTGTGCAAG
CTTTCTAGACCAT
BO07812.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:56:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dlic-RA | 1482 | CG1938-PA | 1..1479 | 17..1495 | 7395 | 100 | Plus |
| Dlic-RD | 1482 | CG1938-PD | 1..1479 | 17..1495 | 7395 | 100 | Plus |
| Dlic-RB | 1197 | CG1938-PB | 1..1194 | 302..1495 | 5970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:56:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dlic-RA | 2241 | CG1938-RA | 347..1827 | 15..1495 | 7405 | 100 | Plus |
| Dlic-RD | 3715 | CG1938-RD | 347..1827 | 15..1495 | 7405 | 100 | Plus |
| Dlic-RB | 3371 | CG1938-RB | 97..1483 | 109..1495 | 6935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:56:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11161317..11161718 | 299..700 | 2010 | 100 | Plus |
| X | 23542271 | X | 11162514..11162782 | 1227..1495 | 1345 | 100 | Plus |
| X | 23542271 | X | 11161781..11162012 | 699..930 | 1160 | 100 | Plus |
| X | 23542271 | X | 11161060..11161251 | 108..299 | 960 | 100 | Plus |
| X | 23542271 | X | 11162267..11162454 | 1041..1228 | 940 | 100 | Plus |
| X | 23542271 | X | 11162086..11162198 | 931..1043 | 565 | 100 | Plus |
| X | 23542271 | X | 11155135..11155230 | 15..110 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:56:56 has no hits.
BO07812.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:38 Download gff for
BO07812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dlic2-RC | 1..1482 | 17..1498 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:13 Download gff for
BO07812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dlic2-RC | 387..1877 | 9..1501 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:55 Download gff for
BO07812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dlic-RD | 349..1827 | 17..1497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:38 Download gff for
BO07812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dlic2-RC | 387..1877 | 9..1501 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:00 Download gff for
BO07812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dlic-RD | 349..1827 | 17..1497 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:00 Download gff for
BO07812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11162086..11162197 | 931..1042 | 100 | -> | Plus |
| X | 11162269..11162454 | 1043..1228 | 100 | -> | Plus |
| X | 11162516..11162782 | 1229..1497 | 99 | | Plus |
| X | 11155137..11155228 | 17..108 | 100 | -> | Plus |
| X | 11161061..11161251 | 109..299 | 100 | -> | Plus |
| X | 11161318..11161718 | 300..700 | 100 | -> | Plus |
| X | 11161783..11162012 | 701..930 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:55 Download gff for
BO07812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11056119..11056230 | 931..1042 | 100 | -> | Plus |
| arm_X | 11056302..11056487 | 1043..1228 | 100 | -> | Plus |
| arm_X | 11049170..11049261 | 17..108 | 100 | -> | Plus |
| arm_X | 11055094..11055284 | 109..299 | 100 | -> | Plus |
| arm_X | 11055351..11055751 | 300..700 | 100 | -> | Plus |
| arm_X | 11055816..11056045 | 701..930 | 100 | -> | Plus |
| arm_X | 11056549..11056815 | 1229..1497 | 99 | | Plus |
BO07812.pep Sequence
Translation from 16 to 1513
> BO07812.pep
MAMNSGTQTNALTSSFTMKKKDAAAEKENLWSAILNEVQTQGSTKLPSNK
SVLVLGDNATGKTTLIAKLQGVEDPKKGSGLEYAYIDVKDEYRDDMTRLG
VWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLNHWIKV
LGQHIDSLQLDAKEKEAARQRLTTTWQSYCEVGDDLDPGSPVKRTMRNNS
IDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEHFDFIQ
QWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPALVVEK
DAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVSNREAE
VQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPGTTGQS
SPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPGTGGPGGAGNPAGPG
RTANGTDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECASFLDH
BO07812.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dlic-PA | 493 | CG1938-PA | 1..493 | 1..493 | 2578 | 100 | Plus |
| Dlic-PD | 493 | CG1938-PD | 1..493 | 1..493 | 2578 | 100 | Plus |
| Dlic-PB | 398 | CG1938-PB | 1..398 | 96..493 | 2100 | 100 | Plus |
