Clone Sequence Records
BO07817.3prime Sequence
971 bp (910 high quality bases) assembled on 2006-01-06
> BO07817.3prime
ATGGTCTAGAAAGCTTGCTGTCCCCTTCGAGGAATTGGTGCTGCCCAGCG
TGGGGGCGATGGGCGTGGTTGGAGAGTCAACCGCCTCCACTGCATCTCCA
TGTTTGAGCCAATATGGCGCCAACCGCAGCATGAGAATGGCGCCCAGCGG
GGCGGTGAATATAATCGCCAGCACCGAGATGATGAGCAAATTCCCGGCCA
GCGCAAGCTGTTCCGGACTGGCCACGCTGGCAGCACGTGCCATGTCCAAA
GCCACTGGACCCAAGGCGGCTTGGACAGTTGCTTTGGGAAAACCGGAAAT
TGTAATGTAGGCACGTTCCTTTCTCGACAGATTTCCGCCATATGTGGATA
AATATGCAAAAGCCAGGCGAAACAAACTTCCGACGAGCACCAACAATGCG
CCATAACCGATTACATGGCCCTGCAGCACGTTGAAATTAATTTCCTTGCC
AATGAGCGCAAACGAGACGGGCTTGAGGAACTTCCACATGAGGTCCAGTC
GCTTGGGCACACTCGCAATTTGCTGGGCCTGCAGCTGCTGGGGCGTCAGT
CTGGTCTCCTCCCGTCGCCAGCCAATCCTCGCAATAAAGGCGGTCGTTAC
ACAACCCAGGGCTCCGGCCGACGTATAACCGATGACGCGGCTGCCCATCA
CGGCGATGGTTCCGCCCAAGATGGTGAGTACGAAGCGGAGGCCATTTGCG
TACGTCGCGTTCCGGGATGGCAAGTACTGGAGCATCGAGCCGTAGAGATA
GCCAAAAACGAGTCCAATCCCGATGCCAATGGGACCCTGCAGCACTTGCT
GGGTAAGCGAAGTCGTTGAGAATATTACGCTGATTATCACGCCAAACATG
AAGATGGCTACCACATCGTTGCATGTGGTCATGGCATAGATGAGCGTATG
AATGCCGCTGTTCAGGCCGAGTCGATCCTCCTTCAACTTCAGCATCACGG
TGACGACCACATTCNGTGAAA
BO07817.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31052-PA | 1755 | CG31052-RA | 800..1752 | 971..19 | 4746 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:20:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nha2-RB | 2625 | CG43442-RB | 1538..2490 | 971..19 | 4754 | 99.9 | Minus |
Nha2-RA | 2162 | CG43442-RA | 1075..2027 | 971..19 | 4754 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:20:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22981594..22981845 | 19..270 | 1260 | 100 | Plus |
3R | 32079331 | 3R | 22983873..22984068 | 511..706 | 965 | 99.5 | Plus |
3R | 32079331 | 3R | 22986310..22986468 | 813..971 | 784 | 99.4 | Plus |
3R | 32079331 | 3R | 22983024..22983167 | 373..516 | 720 | 100 | Plus |
3R | 32079331 | 3R | 22986113..22986219 | 706..812 | 535 | 100 | Plus |
3R | 32079331 | 3R | 22982592..22982695 | 270..373 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:20:45 has no hits.
BO07817.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:55 Download gff for
BO07817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31052-PA | 803..1755 | 18..968 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:51 Download gff for
BO07817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31052-PA | 803..1755 | 18..968 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:49:18 Download gff for
BO07817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nha2-RA | 1078..2036 | 6..968 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:02:19 Download gff for
BO07817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nha2-RA | 1078..2036 | 6..968 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:02:19 Download gff for
BO07817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22981585..22981845 | 6..270 | 98 | <- | Plus |
3R | 22982593..22982694 | 271..372 | 100 | <- | Plus |
3R | 22983024..22983167 | 373..516 | 100 | <- | Plus |
3R | 22983879..22984067 | 517..705 | 100 | <- | Plus |
3R | 22986113..22986219 | 706..812 | 100 | <- | Plus |
3R | 22986310..22986465 | 813..968 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:49:18 Download gff for
BO07817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18807307..18807567 | 6..270 | 98 | <- | Plus |
arm_3R | 18808315..18808416 | 271..372 | 100 | <- | Plus |
arm_3R | 18808746..18808889 | 373..516 | 100 | <- | Plus |
arm_3R | 18809601..18809789 | 517..705 | 100 | <- | Plus |
arm_3R | 18811835..18811941 | 706..812 | 100 | <- | Plus |
arm_3R | 18812032..18812187 | 813..968 | 99 | | Plus |
BO07817.5prime Sequence
954 bp (922 high quality bases) assembled on 2006-01-06
> BO07817.5prime
GAAGTTATCAGTCGACATGACACAAGGTGCAGCGCCGCAGGACTCACAGG
GCGACATCCTGCCCACCCGCCCGCTGCATACCAAATTAGACATACAGAAA
ATCCCAGAGGATGAGGCTGGCGCTGACGCCACACAAAACGCTGCAACAAT
AATTTTAACGCCGACATCATTAAATTTAACAAATACAACAACACAAAATG
TTGCCGCCAACAATGCGGGCAACTCCAGCACCACCACCAGCACCAACACC
AACTACGGCCCAGGATCCGTCTCCGGCTACCCAACTCCGAACGCAACTCC
GGGCGACGAGTACAAAGGACCCAAATGGTGGCTATATATCCGTTCGCATT
GGGTGAACACTTCCGAGCTGGTGGCCCTACTGGCCATTTTCCTGGGCCTT
TGGGCCATGGGCTGGGTTCTGCTGCCGGAGTACTCCCAACCACCGACCGT
CATCATGCGCATTGCATTCCTCTTTGTGGGCGCCCAGATCTCCGGCATCC
TGGTCACCTTTGTCCATCTGCCCGACATGCTGGGCATGCTTTTCTTTGGC
GTACTTTATGCCAACCTGGGCCTGGCCAATTTCGAGGGCTATCAGAAGTT
TGAGCTGTTCCTCAGGGAAATGGCCCTGATCAACATCATGTTGCTGGCTG
GCCTCGGGCTGGATGGAGATGCCTTCAAGCGGCTGTGGTTCATGATACTC
CGGTTAACCCTGCTGCCCACAATTGTGGAGGTGGCAGCCATCGCCGGACT
GGCCAATCTTACACTCTCCATGCCCTGGCTGTGGGGCATTGCTTTGGGCC
TTGTCATCACCGCCGTTTCACCGAATGTGGTCGTCACCGTGATGCTGAAG
TTGAAGGAGGATCGACTCGGCCTGAACAGCGGCATTCATACGCTCATCTA
TGCCATGACCACATGCAACGATGTGGTAGCCATCTTCATGTTGGGCGTGA
TAAT
BO07817.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31052-PA | 1755 | CG31052-RA | 1..938 | 17..954 | 4665 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:31:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nha2-RB | 2625 | CG43442-RB | 737..1676 | 15..954 | 4685 | 99.9 | Plus |
Nha2-RA | 2162 | CG43442-RA | 274..1213 | 15..954 | 4685 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:31:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22991135..22991449 | 329..15 | 1575 | 100 | Minus |
3R | 32079331 | 3R | 22986803..22987092 | 616..327 | 1450 | 100 | Minus |
3R | 32079331 | 3R | 22986563..22986747 | 798..614 | 925 | 100 | Minus |
3R | 32079331 | 3R | 22986330..22986486 | 954..798 | 770 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-04 20:31:38 has no hits.
BO07817.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:56 Download gff for
BO07817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31052-PA | 1..938 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:52 Download gff for
BO07817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31052-PA | 1..938 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:26:27 Download gff for
BO07817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nha2-RA | 274..1213 | 15..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:51:00 Download gff for
BO07817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nha2-RA | 274..1213 | 15..954 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:51:00 Download gff for
BO07817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22986330..22986485 | 799..954 | 99 | <- | Minus |
3R | 22986563..22986745 | 616..798 | 100 | <- | Minus |
3R | 22986804..22987091 | 328..615 | 100 | <- | Minus |
3R | 22991137..22991449 | 15..327 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:26:27 Download gff for
BO07817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18812052..18812207 | 799..954 | 99 | <- | Minus |
arm_3R | 18812285..18812467 | 616..798 | 100 | <- | Minus |
arm_3R | 18812526..18812813 | 328..615 | 100 | <- | Minus |
arm_3R | 18816859..18817171 | 15..327 | 100 | | Minus |
BO07817.complete Sequence
1786 bp (1786 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ638654
> BO07817.complete
GAAGTTATCAGTCGACATGACACAAGGTGCAGCGCCGCAGGACTCACAGG
GCGACATCCTGCCCACCCGCCCGCTGCATACCAAATTAGACATACAGAAA
ATCCCAGAGGATGAGGCTGGCGCTGACGCCACACAAAACGCTGCAACAAT
AATTTTAACGCCGACATCATTAAATTTAACAAATACAACAACACAAAATG
TTGCCGCCAACAATGCGGGCAACTCCAGCACCACCACCAGCACCAACACC
AACTACGGCCCAGGATCCGTCTCCGGCTACCCAACTCCGAACGCAACTCC
GGGCGACGAGTACAAAGGACCCAAATGGTGGCTATATATCCGTTCGCATT
GGGTGAACACTTCCGAGCTGGTGGCCCTACTGGCCATTTTCCTGGGCCTT
TGGGCCATGGGCTGGGTTCTGCTGCCGGAGTACTCCCAACCACCGACCGT
CATCATGCGCATTGCATTCCTCTTTGTGGGCGCCCAGATCTCCGGCATCC
TGGTCACCTTTGTCCATCTGCCCGACATGCTGGGCATGCTTTTCTTTGGC
GTACTTTATGCCAACCTGGGCCTGGCCAATTTCGAGGGCTATCAGAAGTT
TGAGCTGTTCCTCAGGGAAATGGCCCTGATCAACATCATGTTGCTGGCTG
GCCTCGGGCTGGATGGAGATGCCTTCAAGCGGCTGTGGTTCATGATACTC
CGGTTAACCCTGCTGCCCACAATTGTGGAGGTGGCAGCCATCGCCGGACT
GGCCAATCTTACACTCTCCATGCCCTGGCTGTGGGGCATTGCTTTGGGCC
TTGTCATCACCGCCGTTTCACCGAATGTGGTCGTCACCGTGATGCTGAAG
TTGAAGGAGGATCGACTCGGCCTGAACAGCGGCATTCATACGCTCATCTA
TGCCATGACCACATGCAACGATGTGGTAGCCATCTTCATGTTTGGCGTGA
TAATCAGCGTAATATTCTCAACGACTTCGCTTACCCAGCAAGTGCTGCAG
GGTCCCATTGGCATCGGGATTGGACTCGTTTTTGGCTATCTCTACGGCTC
GATGCTCCAGTACTTGCCATCCCGGAACGCGACGTACGCAAATGGCCTCC
GCTTCGTACTCACCATCTTGGGCGGAACCATCGCCGTGATGGGCAGCCGC
GTCATCGGTTATACGTCGGCCGGAGCCCTGGGTTGTGTAACGACCGCCTT
TATTGCGAGGATTGGCTGGCGACGGGAGGAGACCAGACTGACGCCCCAGC
AGCTGCAGGCCCAGCAAATTGCGAGTGTGCCCAAGCGACTGGACCTCATG
TGGAAGTTCCTCAAGCCCGTCTCGTTTGCGCTCATTGGCAAGGAAATTAA
TTTCAACGTGCTGCAGGGCCATGTAATCGGTTATGGCGCATTGTTGGTGC
TCGTCGGAAGTTTGTTTCGCCTGGCTTTTGCATATTTATCCACATATGGC
GGAAATCTGTCGAGAAAGGAACGTGCCTACATTACAATTTCCGGTTTTCC
CAAAGCAACTGTCCAAGCCGCCTTGGGTCCAGTGGCTTTGGACATGGCAC
GTGCTGCCAGCGTGGCCAGTCCGGAACAGCTTGCGCTGGCCGGGAATTTG
CTCATCATCTCGGTGCTGGCGATTATATTCACCGCCCCGCTGGGCGCCAT
TCTCATGCTGCGGTTGGCGCCATATTGGCTCAAACATGGAGATGCAGTGG
AGGCGGTTGACTCTCCAACCACGCCCATCGCCCCCACGCTGGGCAGCACC
AATTCCTCGAAGGGGACAGCAAGCTTTCTAGACCAT
BO07817.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:30:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nha2-RB | 2145 | CG43442-PB | 389..2142 | 15..1768 | 8770 | 100 | Plus |
Nha2-RA | 1755 | CG43442-PA | 1..1752 | 17..1768 | 8760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:30:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nha2-RB | 2625 | CG43442-RB | 737..2490 | 15..1768 | 8770 | 100 | Plus |
Nha2-RA | 2162 | CG43442-RA | 274..2027 | 15..1768 | 8770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:30:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22991135..22991449 | 329..15 | 1575 | 100 | Minus |
3R | 32079331 | 3R | 22986803..22987092 | 616..327 | 1450 | 100 | Minus |
3R | 32079331 | 3R | 22981594..22981845 | 1768..1517 | 1260 | 100 | Minus |
3R | 32079331 | 3R | 22983873..22984068 | 1276..1081 | 965 | 99.5 | Minus |
3R | 32079331 | 3R | 22986563..22986747 | 798..614 | 925 | 100 | Minus |
3R | 32079331 | 3R | 22986310..22986486 | 974..798 | 885 | 100 | Minus |
3R | 32079331 | 3R | 22983024..22983167 | 1414..1271 | 720 | 100 | Minus |
3R | 32079331 | 3R | 22986113..22986219 | 1081..975 | 535 | 100 | Minus |
3R | 32079331 | 3R | 22982592..22982695 | 1517..1414 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:30:12 has no hits.
BO07817.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:42 Download gff for
BO07817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nha2-RA | 274..2036 | 15..1781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:32 Download gff for
BO07817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nha2-RA | 276..2027 | 17..1770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:02 Download gff for
BO07817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango12-RA | 274..2036 | 15..1781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:36 Download gff for
BO07817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nha2-RA | 276..2027 | 17..1770 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:36 Download gff for
BO07817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22982593..22982694 | 1415..1516 | 100 | <- | Minus |
3R | 22983024..22983167 | 1271..1414 | 100 | <- | Minus |
3R | 22983879..22984067 | 1082..1270 | 100 | <- | Minus |
3R | 22986113..22986219 | 975..1081 | 100 | <- | Minus |
3R | 22986310..22986485 | 799..974 | 100 | <- | Minus |
3R | 22986563..22986745 | 616..798 | 100 | <- | Minus |
3R | 22986804..22987091 | 328..615 | 100 | <- | Minus |
3R | 22981590..22981845 | 1517..1770 | 99 | <- | Minus |
3R | 22991137..22991447 | 17..327 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:32 Download gff for
BO07817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18807312..18807567 | 1517..1770 | 99 | <- | Minus |
arm_3R | 18808315..18808416 | 1415..1516 | 100 | <- | Minus |
arm_3R | 18808746..18808889 | 1271..1414 | 100 | <- | Minus |
arm_3R | 18809601..18809789 | 1082..1270 | 100 | <- | Minus |
arm_3R | 18811835..18811941 | 975..1081 | 100 | <- | Minus |
arm_3R | 18812032..18812207 | 799..974 | 100 | <- | Minus |
arm_3R | 18812285..18812467 | 616..798 | 100 | <- | Minus |
arm_3R | 18812526..18812813 | 328..615 | 100 | <- | Minus |
arm_3R | 18816859..18817169 | 17..327 | 100 | | Minus |
BO07817.pep Sequence
Translation from 16 to 1786
> BO07817.pep
MTQGAAPQDSQGDILPTRPLHTKLDIQKIPEDEAGADATQNAATIILTPT
SLNLTNTTTQNVAANNAGNSSTTTSTNTNYGPGSVSGYPTPNATPGDEYK
GPKWWLYIRSHWVNTSELVALLAIFLGLWAMGWVLLPEYSQPPTVIMRIA
FLFVGAQISGILVTFVHLPDMLGMLFFGVLYANLGLANFEGYQKFELFLR
EMALINIMLLAGLGLDGDAFKRLWFMILRLTLLPTIVEVAAIAGLANLTL
SMPWLWGIALGLVITAVSPNVVVTVMLKLKEDRLGLNSGIHTLIYAMTTC
NDVVAIFMFGVIISVIFSTTSLTQQVLQGPIGIGIGLVFGYLYGSMLQYL
PSRNATYANGLRFVLTILGGTIAVMGSRVIGYTSAGALGCVTTAFIARIG
WRREETRLTPQQLQAQQIASVPKRLDLMWKFLKPVSFALIGKEINFNVLQ
GHVIGYGALLVLVGSLFRLAFAYLSTYGGNLSRKERAYITISGFPKATVQ
AALGPVALDMARAASVASPEQLALAGNLLIISVLAIIFTAPLGAILMLRL
APYWLKHGDAVEAVDSPTTPIAPTLGSTNSSKGTASFLDH
BO07817.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:36:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nha2-PB | 714 | CG43442-PB | 131..714 | 1..584 | 2966 | 100 | Plus |
Nha2-PA | 584 | CG43442-PA | 1..584 | 1..584 | 2966 | 100 | Plus |
Nha1-PB | 708 | CG10806-PB | 216..638 | 116..547 | 661 | 32.8 | Plus |
Nha1-PA | 715 | CG10806-PA | 223..645 | 116..547 | 661 | 32.8 | Plus |