Clone BO07817 Report

Search the DGRC for BO07817

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:78
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptNha2-RA
Protein status:BO07817.pep: validated full length
Sequenced Size:1786

Clone Sequence Records

BO07817.3prime Sequence

971 bp (910 high quality bases) assembled on 2006-01-06

> BO07817.3prime
ATGGTCTAGAAAGCTTGCTGTCCCCTTCGAGGAATTGGTGCTGCCCAGCG
TGGGGGCGATGGGCGTGGTTGGAGAGTCAACCGCCTCCACTGCATCTCCA
TGTTTGAGCCAATATGGCGCCAACCGCAGCATGAGAATGGCGCCCAGCGG
GGCGGTGAATATAATCGCCAGCACCGAGATGATGAGCAAATTCCCGGCCA
GCGCAAGCTGTTCCGGACTGGCCACGCTGGCAGCACGTGCCATGTCCAAA
GCCACTGGACCCAAGGCGGCTTGGACAGTTGCTTTGGGAAAACCGGAAAT
TGTAATGTAGGCACGTTCCTTTCTCGACAGATTTCCGCCATATGTGGATA
AATATGCAAAAGCCAGGCGAAACAAACTTCCGACGAGCACCAACAATGCG
CCATAACCGATTACATGGCCCTGCAGCACGTTGAAATTAATTTCCTTGCC
AATGAGCGCAAACGAGACGGGCTTGAGGAACTTCCACATGAGGTCCAGTC
GCTTGGGCACACTCGCAATTTGCTGGGCCTGCAGCTGCTGGGGCGTCAGT
CTGGTCTCCTCCCGTCGCCAGCCAATCCTCGCAATAAAGGCGGTCGTTAC
ACAACCCAGGGCTCCGGCCGACGTATAACCGATGACGCGGCTGCCCATCA
CGGCGATGGTTCCGCCCAAGATGGTGAGTACGAAGCGGAGGCCATTTGCG
TACGTCGCGTTCCGGGATGGCAAGTACTGGAGCATCGAGCCGTAGAGATA
GCCAAAAACGAGTCCAATCCCGATGCCAATGGGACCCTGCAGCACTTGCT
GGGTAAGCGAAGTCGTTGAGAATATTACGCTGATTATCACGCCAAACATG
AAGATGGCTACCACATCGTTGCATGTGGTCATGGCATAGATGAGCGTATG
AATGCCGCTGTTCAGGCCGAGTCGATCCTCCTTCAACTTCAGCATCACGG
TGACGACCACATTCNGTGAAA

BO07817.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG31052-PA 1755 CG31052-RA 800..1752 971..19 4746 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
Nha2-RB 2625 CG43442-RB 1538..2490 971..19 4754 99.9 Minus
Nha2-RA 2162 CG43442-RA 1075..2027 971..19 4754 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22981594..22981845 19..270 1260 100 Plus
3R 32079331 3R 22983873..22984068 511..706 965 99.5 Plus
3R 32079331 3R 22986310..22986468 813..971 784 99.4 Plus
3R 32079331 3R 22983024..22983167 373..516 720 100 Plus
3R 32079331 3R 22986113..22986219 706..812 535 100 Plus
3R 32079331 3R 22982592..22982695 270..373 520 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:20:45 has no hits.

BO07817.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:55 Download gff for BO07817.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31052-PA 803..1755 18..968 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:51 Download gff for BO07817.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31052-PA 803..1755 18..968 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:49:18 Download gff for BO07817.3prime
Subject Subject Range Query Range Percent Splice Strand
Nha2-RA 1078..2036 6..968 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:02:19 Download gff for BO07817.3prime
Subject Subject Range Query Range Percent Splice Strand
Nha2-RA 1078..2036 6..968 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:02:19 Download gff for BO07817.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22981585..22981845 6..270 98 <- Plus
3R 22982593..22982694 271..372 100 <- Plus
3R 22983024..22983167 373..516 100 <- Plus
3R 22983879..22984067 517..705 100 <- Plus
3R 22986113..22986219 706..812 100 <- Plus
3R 22986310..22986465 813..968 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:49:18 Download gff for BO07817.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18807307..18807567 6..270 98 <- Plus
arm_3R 18808315..18808416 271..372 100 <- Plus
arm_3R 18808746..18808889 373..516 100 <- Plus
arm_3R 18809601..18809789 517..705 100 <- Plus
arm_3R 18811835..18811941 706..812 100 <- Plus
arm_3R 18812032..18812187 813..968 99   Plus

BO07817.5prime Sequence

954 bp (922 high quality bases) assembled on 2006-01-06

> BO07817.5prime
GAAGTTATCAGTCGACATGACACAAGGTGCAGCGCCGCAGGACTCACAGG
GCGACATCCTGCCCACCCGCCCGCTGCATACCAAATTAGACATACAGAAA
ATCCCAGAGGATGAGGCTGGCGCTGACGCCACACAAAACGCTGCAACAAT
AATTTTAACGCCGACATCATTAAATTTAACAAATACAACAACACAAAATG
TTGCCGCCAACAATGCGGGCAACTCCAGCACCACCACCAGCACCAACACC
AACTACGGCCCAGGATCCGTCTCCGGCTACCCAACTCCGAACGCAACTCC
GGGCGACGAGTACAAAGGACCCAAATGGTGGCTATATATCCGTTCGCATT
GGGTGAACACTTCCGAGCTGGTGGCCCTACTGGCCATTTTCCTGGGCCTT
TGGGCCATGGGCTGGGTTCTGCTGCCGGAGTACTCCCAACCACCGACCGT
CATCATGCGCATTGCATTCCTCTTTGTGGGCGCCCAGATCTCCGGCATCC
TGGTCACCTTTGTCCATCTGCCCGACATGCTGGGCATGCTTTTCTTTGGC
GTACTTTATGCCAACCTGGGCCTGGCCAATTTCGAGGGCTATCAGAAGTT
TGAGCTGTTCCTCAGGGAAATGGCCCTGATCAACATCATGTTGCTGGCTG
GCCTCGGGCTGGATGGAGATGCCTTCAAGCGGCTGTGGTTCATGATACTC
CGGTTAACCCTGCTGCCCACAATTGTGGAGGTGGCAGCCATCGCCGGACT
GGCCAATCTTACACTCTCCATGCCCTGGCTGTGGGGCATTGCTTTGGGCC
TTGTCATCACCGCCGTTTCACCGAATGTGGTCGTCACCGTGATGCTGAAG
TTGAAGGAGGATCGACTCGGCCTGAACAGCGGCATTCATACGCTCATCTA
TGCCATGACCACATGCAACGATGTGGTAGCCATCTTCATGTTGGGCGTGA
TAAT

BO07817.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31052-PA 1755 CG31052-RA 1..938 17..954 4665 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
Nha2-RB 2625 CG43442-RB 737..1676 15..954 4685 99.9 Plus
Nha2-RA 2162 CG43442-RA 274..1213 15..954 4685 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:31:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22991135..22991449 329..15 1575 100 Minus
3R 32079331 3R 22986803..22987092 616..327 1450 100 Minus
3R 32079331 3R 22986563..22986747 798..614 925 100 Minus
3R 32079331 3R 22986330..22986486 954..798 770 99.4 Minus
Blast to na_te.dros performed on 2015-02-04 20:31:38 has no hits.

BO07817.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:56 Download gff for BO07817.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31052-PA 1..938 17..954 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:52 Download gff for BO07817.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31052-PA 1..938 17..954 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:26:27 Download gff for BO07817.5prime
Subject Subject Range Query Range Percent Splice Strand
Nha2-RA 274..1213 15..954 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:51:00 Download gff for BO07817.5prime
Subject Subject Range Query Range Percent Splice Strand
Nha2-RA 274..1213 15..954 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:51:00 Download gff for BO07817.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22986330..22986485 799..954 99 <- Minus
3R 22986563..22986745 616..798 100 <- Minus
3R 22986804..22987091 328..615 100 <- Minus
3R 22991137..22991449 15..327 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:26:27 Download gff for BO07817.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18812052..18812207 799..954 99 <- Minus
arm_3R 18812285..18812467 616..798 100 <- Minus
arm_3R 18812526..18812813 328..615 100 <- Minus
arm_3R 18816859..18817171 15..327 100   Minus

BO07817.complete Sequence

1786 bp (1786 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ638654

> BO07817.complete
GAAGTTATCAGTCGACATGACACAAGGTGCAGCGCCGCAGGACTCACAGG
GCGACATCCTGCCCACCCGCCCGCTGCATACCAAATTAGACATACAGAAA
ATCCCAGAGGATGAGGCTGGCGCTGACGCCACACAAAACGCTGCAACAAT
AATTTTAACGCCGACATCATTAAATTTAACAAATACAACAACACAAAATG
TTGCCGCCAACAATGCGGGCAACTCCAGCACCACCACCAGCACCAACACC
AACTACGGCCCAGGATCCGTCTCCGGCTACCCAACTCCGAACGCAACTCC
GGGCGACGAGTACAAAGGACCCAAATGGTGGCTATATATCCGTTCGCATT
GGGTGAACACTTCCGAGCTGGTGGCCCTACTGGCCATTTTCCTGGGCCTT
TGGGCCATGGGCTGGGTTCTGCTGCCGGAGTACTCCCAACCACCGACCGT
CATCATGCGCATTGCATTCCTCTTTGTGGGCGCCCAGATCTCCGGCATCC
TGGTCACCTTTGTCCATCTGCCCGACATGCTGGGCATGCTTTTCTTTGGC
GTACTTTATGCCAACCTGGGCCTGGCCAATTTCGAGGGCTATCAGAAGTT
TGAGCTGTTCCTCAGGGAAATGGCCCTGATCAACATCATGTTGCTGGCTG
GCCTCGGGCTGGATGGAGATGCCTTCAAGCGGCTGTGGTTCATGATACTC
CGGTTAACCCTGCTGCCCACAATTGTGGAGGTGGCAGCCATCGCCGGACT
GGCCAATCTTACACTCTCCATGCCCTGGCTGTGGGGCATTGCTTTGGGCC
TTGTCATCACCGCCGTTTCACCGAATGTGGTCGTCACCGTGATGCTGAAG
TTGAAGGAGGATCGACTCGGCCTGAACAGCGGCATTCATACGCTCATCTA
TGCCATGACCACATGCAACGATGTGGTAGCCATCTTCATGTTTGGCGTGA
TAATCAGCGTAATATTCTCAACGACTTCGCTTACCCAGCAAGTGCTGCAG
GGTCCCATTGGCATCGGGATTGGACTCGTTTTTGGCTATCTCTACGGCTC
GATGCTCCAGTACTTGCCATCCCGGAACGCGACGTACGCAAATGGCCTCC
GCTTCGTACTCACCATCTTGGGCGGAACCATCGCCGTGATGGGCAGCCGC
GTCATCGGTTATACGTCGGCCGGAGCCCTGGGTTGTGTAACGACCGCCTT
TATTGCGAGGATTGGCTGGCGACGGGAGGAGACCAGACTGACGCCCCAGC
AGCTGCAGGCCCAGCAAATTGCGAGTGTGCCCAAGCGACTGGACCTCATG
TGGAAGTTCCTCAAGCCCGTCTCGTTTGCGCTCATTGGCAAGGAAATTAA
TTTCAACGTGCTGCAGGGCCATGTAATCGGTTATGGCGCATTGTTGGTGC
TCGTCGGAAGTTTGTTTCGCCTGGCTTTTGCATATTTATCCACATATGGC
GGAAATCTGTCGAGAAAGGAACGTGCCTACATTACAATTTCCGGTTTTCC
CAAAGCAACTGTCCAAGCCGCCTTGGGTCCAGTGGCTTTGGACATGGCAC
GTGCTGCCAGCGTGGCCAGTCCGGAACAGCTTGCGCTGGCCGGGAATTTG
CTCATCATCTCGGTGCTGGCGATTATATTCACCGCCCCGCTGGGCGCCAT
TCTCATGCTGCGGTTGGCGCCATATTGGCTCAAACATGGAGATGCAGTGG
AGGCGGTTGACTCTCCAACCACGCCCATCGCCCCCACGCTGGGCAGCACC
AATTCCTCGAAGGGGACAGCAAGCTTTCTAGACCAT

BO07817.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
Nha2-RB 2145 CG43442-PB 389..2142 15..1768 8770 100 Plus
Nha2-RA 1755 CG43442-PA 1..1752 17..1768 8760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
Nha2-RB 2625 CG43442-RB 737..2490 15..1768 8770 100 Plus
Nha2-RA 2162 CG43442-RA 274..2027 15..1768 8770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22991135..22991449 329..15 1575 100 Minus
3R 32079331 3R 22986803..22987092 616..327 1450 100 Minus
3R 32079331 3R 22981594..22981845 1768..1517 1260 100 Minus
3R 32079331 3R 22983873..22984068 1276..1081 965 99.5 Minus
3R 32079331 3R 22986563..22986747 798..614 925 100 Minus
3R 32079331 3R 22986310..22986486 974..798 885 100 Minus
3R 32079331 3R 22983024..22983167 1414..1271 720 100 Minus
3R 32079331 3R 22986113..22986219 1081..975 535 100 Minus
3R 32079331 3R 22982592..22982695 1517..1414 520 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:30:12 has no hits.

BO07817.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:42 Download gff for BO07817.complete
Subject Subject Range Query Range Percent Splice Strand
Nha2-RA 274..2036 15..1781 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:32 Download gff for BO07817.complete
Subject Subject Range Query Range Percent Splice Strand
Nha2-RA 276..2027 17..1770 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:02 Download gff for BO07817.complete
Subject Subject Range Query Range Percent Splice Strand
Tango12-RA 274..2036 15..1781 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:36 Download gff for BO07817.complete
Subject Subject Range Query Range Percent Splice Strand
Nha2-RA 276..2027 17..1770 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:36 Download gff for BO07817.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22982593..22982694 1415..1516 100 <- Minus
3R 22983024..22983167 1271..1414 100 <- Minus
3R 22983879..22984067 1082..1270 100 <- Minus
3R 22986113..22986219 975..1081 100 <- Minus
3R 22986310..22986485 799..974 100 <- Minus
3R 22986563..22986745 616..798 100 <- Minus
3R 22986804..22987091 328..615 100 <- Minus
3R 22981590..22981845 1517..1770 99 <- Minus
3R 22991137..22991447 17..327 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:32 Download gff for BO07817.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18807312..18807567 1517..1770 99 <- Minus
arm_3R 18808315..18808416 1415..1516 100 <- Minus
arm_3R 18808746..18808889 1271..1414 100 <- Minus
arm_3R 18809601..18809789 1082..1270 100 <- Minus
arm_3R 18811835..18811941 975..1081 100 <- Minus
arm_3R 18812032..18812207 799..974 100 <- Minus
arm_3R 18812285..18812467 616..798 100 <- Minus
arm_3R 18812526..18812813 328..615 100 <- Minus
arm_3R 18816859..18817169 17..327 100   Minus

BO07817.pep Sequence

Translation from 16 to 1786

> BO07817.pep
MTQGAAPQDSQGDILPTRPLHTKLDIQKIPEDEAGADATQNAATIILTPT
SLNLTNTTTQNVAANNAGNSSTTTSTNTNYGPGSVSGYPTPNATPGDEYK
GPKWWLYIRSHWVNTSELVALLAIFLGLWAMGWVLLPEYSQPPTVIMRIA
FLFVGAQISGILVTFVHLPDMLGMLFFGVLYANLGLANFEGYQKFELFLR
EMALINIMLLAGLGLDGDAFKRLWFMILRLTLLPTIVEVAAIAGLANLTL
SMPWLWGIALGLVITAVSPNVVVTVMLKLKEDRLGLNSGIHTLIYAMTTC
NDVVAIFMFGVIISVIFSTTSLTQQVLQGPIGIGIGLVFGYLYGSMLQYL
PSRNATYANGLRFVLTILGGTIAVMGSRVIGYTSAGALGCVTTAFIARIG
WRREETRLTPQQLQAQQIASVPKRLDLMWKFLKPVSFALIGKEINFNVLQ
GHVIGYGALLVLVGSLFRLAFAYLSTYGGNLSRKERAYITISGFPKATVQ
AALGPVALDMARAASVASPEQLALAGNLLIISVLAIIFTAPLGAILMLRL
APYWLKHGDAVEAVDSPTTPIAPTLGSTNSSKGTASFLDH

BO07817.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
Nha2-PB 714 CG43442-PB 131..714 1..584 2966 100 Plus
Nha2-PA 584 CG43442-PA 1..584 1..584 2966 100 Plus
Nha1-PB 708 CG10806-PB 216..638 116..547 661 32.8 Plus
Nha1-PA 715 CG10806-PA 223..645 116..547 661 32.8 Plus