Clone Sequence Records
BO07818.3prime Sequence
936 bp (862 high quality bases) assembled on 2006-01-06
> BO07818.3prime
ATGGTCTAGAAAGCTTGCGAAGATCACCGTTAGCGGTCGTCGAAAGTCCG
CGGCGGTGGCGCCACCACTCCCACCGCCCGCCGAGCCCCCGGCTGCACCT
GCGGCCCCACCACCCACTGCACCACCCGCTGCCGCTGCCAATTGACCGCC
ATATTGCTGGGCATATTGGGCGTAGTCCAGACCCACATCACTGGGCGAAT
GCAGATGCGGCTTGGACTCAACCGCCTCCAATTGGGGTGTGGCATCGCGG
TCATCCAGCCCACTGCTGCTGTTGTTGTTGTGCGAGCTGGCACTGCCGCC
CCCGCCGCTGCCCCCACCACCGCTGAGCAGCAACTGTTGCTGCTGCTGCT
GCTGTTGCTGCTGCTGCTGCTGTTGCTGCTGGTGGTGGGCTGCTGCATGT
TGCTGGGCACCATAAATCTTGGATATGTCGAAGGCATAGTTGGCCGCCCG
ATCCTGGTACATCTTGGAGTCGAAATACGCCTTGGTCAGCACACTGGGGT
CCAAGTAGGCGCTGTAGGCACTCGCCTGCGAGGAGTTGCTCAGATACGAG
CTGCGCTCCAGGGCGAACTTGTCCATCTGACCGGAGAGGGTGGCCTGCGT
CGTGGTTGGCGTCGATGTCTGGCCGAGATGGCTGCCCAGGTGATAGGCAG
CCGCTGTGGGACCGGGCGCAAAGTAACCGGGCGTTATGCCCGCTCTTAAC
GCCTCCACGGGCACAGATGGATATGGCATTGGATAAGGATAGCCATCGCG
TCTCAGAGCTTTTGGCTTTCGTCGCGGTCTGTATTTATAGTCCGGATGTT
CCTTCATGTGCATGGCCCTCAATCGTTTGGCCTCATCGATGAACGGACGC
TTCTCCTCCTCGGTGAGCAACTTCCACTCGGCACCCAGCCTTTTGGATAT
CTCTGAATTGTGCATCTTAGGATTATCCTGAGCTAT
BO07818.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32139-PA | 1716 | Sox21b-RA | 796..1713 | 936..19 | 4590 | 100 | Minus |
| CG17888-PC | 1713 | Pdp1-RC | 112..164 | 381..329 | 165 | 92.4 | Minus |
| CG5893-PA | 1149 | D-RA | 571..626 | 843..788 | 155 | 91 | Minus |
| CG7391-PF | 2886 | Clk-RF | 2257..2308 | 378..330 | 140 | 90.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:23:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sox21b-RC | 3201 | CG32139-RC | 1662..2579 | 936..19 | 4590 | 100 | Minus |
| Sox21b-RB | 3201 | CG32139-RB | 1662..2579 | 936..19 | 4590 | 100 | Minus |
| Sox21b-RA | 2648 | CG32139-RA | 1109..2026 | 936..19 | 4590 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:23:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14113027..14113605 | 19..597 | 2895 | 100 | Plus |
| 3L | 28110227 | 3L | 14118444..14118574 | 689..819 | 655 | 100 | Plus |
| 3L | 28110227 | 3L | 14116265..14116361 | 594..690 | 485 | 100 | Plus |
| 3L | 28110227 | 3L | 14176689..14176854 | 764..929 | 425 | 83.7 | Plus |
| 3L | 28110227 | 3L | 14118630..14118698 | 817..885 | 345 | 100 | Plus |
| 2L | 23513712 | 2L | 8827090..8827265 | 928..753 | 310 | 78.4 | Minus |
| 3L | 28110227 | 3L | 14106544..14106654 | 820..930 | 285 | 83.8 | Plus |
| 3L | 28110227 | 3L | 14125084..14125137 | 883..936 | 270 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 13:23:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2422 | 381..264 | 198 | 64.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6819 | 362..264 | 146 | 62 | Minus |
BO07818.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:57 Download gff for
BO07818.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32139-PA | 796..1716 | 16..936 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:54 Download gff for
BO07818.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32139-PA | 796..1716 | 16..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:08:22 Download gff for
BO07818.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox21b-RA | 1109..2026 | 19..936 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:54:18 Download gff for
BO07818.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox21b-RA | 1109..2026 | 19..936 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:54:18 Download gff for
BO07818.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14113027..14113602 | 19..594 | 100 | <- | Plus |
| 3L | 14116266..14116360 | 595..689 | 100 | <- | Plus |
| 3L | 14118445..14118572 | 690..817 | 100 | <- | Plus |
| 3L | 14118631..14118697 | 818..884 | 100 | <- | Plus |
| 3L | 14125086..14125137 | 885..936 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:08:22 Download gff for
BO07818.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14106127..14106702 | 19..594 | 100 | <- | Plus |
| arm_3L | 14109366..14109460 | 595..689 | 100 | <- | Plus |
| arm_3L | 14111545..14111672 | 690..817 | 100 | <- | Plus |
| arm_3L | 14111731..14111797 | 818..884 | 100 | <- | Plus |
| arm_3L | 14118186..14118237 | 885..936 | 100 | | Plus |
BO07818.5prime Sequence
891 bp (829 high quality bases) assembled on 2006-01-06
> BO07818.5prime
GAAGTTATCAGTCGACATGATGGAACGTCTGTCCACGCACCTGTCGCTCA
CCGGCCTATCGCTAGCTCATCCCCTGCAAACTCACCTGGGTTCCGGCGGC
GGAACGCACCACCTTGGTCAACTGGCGGCGGCGGTGCATCAGCAGCAACA
GCAGCAGCAACAATCTGACCAGGGTCTCGGCCACTCGCACCACCTGCACG
GCCAGCAGTTGTCGCTGAACCACCAGCACCACCATCCCCACCAGTCGCCA
CAGCATCAGCAGCAGCATCAGCACCACCCGTGCAGTAGCAACAGCAGCAA
CGGATCCCCCAACGGCTCCACCGGCCTGGGCCTGCATCCCCACTCGGCGC
TCCACCTGGCACACCATCACTCGCAGCTGCATCAGCACCACCCGGCGGGT
CAGCAGCAGCAGCACAGCCAACCGCCGGTTTCCTCCTCCTCGACCTCGCA
CCACAGCCAGTCGCAGGCGCTGAGCCATCAGACGCACAGCAACGGCAGCT
CCCAGCTGGGCGGTGGTTCGGCCAGTGGTGCGGGATCAGTGGCCGGCGGT
GCAGCCAACAGCCACCACAGTGCTCCAGCCTCCAGCAGCGTGATGGCGGC
CGCAGCAGCCGCCCACCTGCATCACAACTCGCAGGCATCGCCCATCAGCA
ATCTGCACCAAAACATGGGCAGTCTCATGAACAGCGGAAGCAGCGCGAGC
GATGTCTTCTTTAGTCTGATGATCCAGAACACAACAAAGCGCCAAAACGA
GGAGCACATAANACGTCCAATGAACGCTTTCATGGTCTGGTCGAGACTTC
AGCGGCGCAAGATAGCTCANGATAATCCTAAGATGCACAATTCAGAGATA
TCCAAAAGGCTGGGGTGCCGAGTGGAAGTTGCTCACCGAGG
BO07818.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32139-PA | 1716 | Sox21b-RA | 1..848 | 17..864 | 4202 | 99.7 | Plus |
| CG32139-PA | 1716 | Sox21b-RA | 846..874 | 863..891 | 145 | 100 | Plus |
| CG7345-PA | 1167 | Sox21a-RA | 370..396 | 767..793 | 135 | 100 | Plus |
| CG33141-PA | 4440 | sns-RA | 45..71 | 136..162 | 135 | 100 | Plus |
| CG33141-PB | 4629 | sns-RB | 45..71 | 136..162 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:21:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sox21b-RC | 3201 | CG32139-RC | 863..1740 | 13..891 | 4333 | 99.5 | Plus |
| Sox21b-RB | 3201 | CG32139-RB | 863..1740 | 13..891 | 4333 | 99.5 | Plus |
| Sox21b-RA | 2648 | CG32139-RA | 310..1187 | 13..891 | 4333 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:21:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14125390..14126076 | 699..13 | 3420 | 99.9 | Minus |
| 3L | 28110227 | 3L | 14125085..14125251 | 864..698 | 813 | 98.8 | Minus |
| 3L | 28110227 | 3L | 14176784..14176909 | 890..764 | 259 | 81.9 | Minus |
| 3L | 28110227 | 3L | 14106584..14106705 | 889..767 | 254 | 82.1 | Minus |
Blast to na_te.dros performed 2015-02-12 00:21:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6911 | 137..325 | 290 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2539 | 130..381 | 263 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6923 | 136..325 | 255 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6923 | 136..301 | 252 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2541 | 137..344 | 237 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6959 | 219..428 | 234 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2354..2642 | 136..427 | 218 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2502 | 137..325 | 214 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6964 | 136..316 | 212 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6952 | 137..297 | 198 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2607..2922 | 107..422 | 193 | 53.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2536 | 137..279 | 185 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2382..2539 | 137..296 | 183 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6817..6944 | 136..260 | 182 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2778..2961 | 119..301 | 180 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2436..2622 | 129..313 | 155 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6830..7007 | 134..301 | 147 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2831..2989 | 136..296 | 144 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2785..3031 | 141..387 | 137 | 53 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6826 | 353..420 | 135 | 68.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1124..1150 | 137..163 | 126 | 96.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6893..7059 | 137..305 | 120 | 55.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1099..1137 | 125..162 | 120 | 82.1 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7941..7977 | 127..162 | 119 | 83.8 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9385..9421 | 127..162 | 119 | 83.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2354..2427 | 349..422 | 118 | 62.2 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 641..705 | 413..346 | 117 | 66.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2370 | 362..418 | 116 | 69 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1058..1128 | 91..162 | 114 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1585 | 137..198 | 112 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6802 | 361..427 | 108 | 65.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1090..1116 | 136..162 | 108 | 88.9 | Plus |
BO07818.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:29:58 Download gff for
BO07818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32139-PA | 1..874 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:55 Download gff for
BO07818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32139-PA | 1..874 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:49:21 Download gff for
BO07818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox21b-RA | 305..1187 | 7..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:03:51 Download gff for
BO07818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox21b-RA | 305..1187 | 7..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:03:51 Download gff for
BO07818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14118671..14118697 | 864..891 | 96 | <- | Minus |
| 3L | 14125086..14125249 | 700..863 | 98 | <- | Minus |
| 3L | 14125390..14126081 | 7..699 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:49:21 Download gff for
BO07818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14111771..14111797 | 864..891 | 96 | <- | Minus |
| arm_3L | 14118186..14118349 | 700..863 | 98 | <- | Minus |
| arm_3L | 14118490..14119181 | 7..699 | 99 | | Minus |
BO07818.complete Sequence
1747 bp assembled on 2007-10-26
GenBank Submission: FJ630942
> BO07818.complete
GAAGTTATCAGTCGACATGATGGAACGTCTGTCCACGCACCTGTCGCTCA
CCGGCCTATCGCTAGCTCATCCCCTGCAAACTCACCTGGGTTCCGGCGGC
GGAACGCACCACCTTGGTCAACTGGCGGCGGCGGTGCATCAGCAGCAACA
GCAGCAGCAACAATCTGACCAGGGTCTCGGCCACTCGCACCACCTGCACG
GCCAGCAGTTGTCGCTGAACCACCAGCACCACCATCCCCACCAGTCGCCA
CAGCATCAGCAGCAGCATCAGCACCACCCGTGCAGTAGCAACAGCAGCAA
CGGATCCCCCAACGGCTCCACCGGCCTGGGCCTGCATCCCCACTCGGCGC
TCCACCTGGCACACCATCACTCGCAGCTGCATCAGCACCACCCGGCGGGT
CAGCAGCAGCAGCACAGCCAACCGCCGGTTTCCTCCTCCTCGACCTCGCA
CCACAGCCAGTCGCAGGCGCTGAGCCATCAGACGCACAGCAACGGCAGCT
CCCAGCTGGGCGGTGGTTCGGCCAGTGGTGCGGGATCAGTGGCCGGCGGT
GCAGCCAACAGCCACCACAGTGCTCCAGCCTCCAGCAGCGTGATGGCGGC
CGCAGCAGCCGCCCACCTGCATCACAACTCGCAGGCATCGCCCATCAGCA
ATCTGCACCAAAACATGGGCAGTCTCATGAACAGCGGAAGCAGCGCGAGC
GATGTCTTCTTTAGTCTGATGATCCAGAACACAACAAAGCGCCAAAACGA
GGAGCACATAAAACGTCCAATGAACGCTTTCATGGTCTGGTCGAGACTTC
AGCGGCGCAAGATAGCTCAGGATAATCCTAAGATGCACAATTCAGAGATA
TCCAAAAGGCTGGGTGCCGAGTGGAAGTTGCTCACCGAGGAGGAGAAGCG
TCCGTTCATCGATGAGGCCAAACGATTGAGGGCCATGCACATGAAGGAAC
ATCCGGACTATAAATACAGACCGCGACGAAAGCCAAAAGCTCTGAGACGC
GATGGCTATCCTTATCCAATGCCATATCCATCTGTGCCCGTGGAGGCGTT
AAGAGCGGGCATAACGCCCGGTTACTTTGCGCCCGGTCCCACAGCGGCTG
CCTATCACCTGGGCAGCCATCTCGGCCAGACATCGACGCCAACCACGACG
CAGGCCACCCTCTCCGGTCAGATGGACAAGTTCGCCCTGGAGCGCAGCTC
GTATCTGAGCAACTCCTCGCAGGCGAGTGCCTACAGCGCCTACTTGGACC
CCAGTGTGCTGACCAAGGCGTATTTCGACTCCAAGATGTACCAGGATCGG
GCGGCCAACTATGCCTTCGACATATCCAAGATTTATGGTGCCCAGCAACA
TGCAGCAGCCCACCACCAGCAGCAACAGCAGCAGCAGCAGCAACAGCAGC
AGCAGCAGCAACAGTTGCTGCTCAGCGGTGGTGGGGGCAGCGGCGGGGGC
GGCAGTGCCAGCTCGCACAACAACAACAGCAGCAGTGGGCTGGATGACCG
CGATGCCACACCCCAATTGGAGGCGGTTGAGTCCAAGCCGCATCTGCATT
CGCCCAGTGATGTGGGTCTGGACTACGCCCAATATGCCCAGCAATATGGC
GGTCAATTGGCAGCGGCAGCGGGTGGTGCAGTGGGTGGTGGGGCCGCAGG
TGCAGCCGGGGGCTCGGCGGGCGGTGGGAGTGGTGGCGCCACCGCCGCGG
ACTTTCGACGACCGCTAACGGTGATCTTCGCAAGCTTTCTAGACCAT
BO07818.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:07:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sox21b-RC | 1764 | CG32139-PC | 1..1713 | 17..1729 | 8565 | 100 | Plus |
| Sox21b-RB | 1716 | CG32139-PB | 1..1713 | 17..1729 | 8565 | 100 | Plus |
| Sox21b-RA | 1716 | CG32139-PA | 1..1713 | 17..1729 | 8565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sox21b-RC | 3201 | CG32139-RC | 863..2579 | 13..1729 | 8570 | 99.9 | Plus |
| Sox21b-RB | 3201 | CG32139-RB | 863..2579 | 13..1729 | 8570 | 99.9 | Plus |
| Sox21b-RA | 2648 | CG32139-RA | 310..2026 | 13..1729 | 8570 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:07:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14125390..14126076 | 699..13 | 3420 | 99.9 | Minus |
| 3L | 28110227 | 3L | 14113027..14113605 | 1729..1151 | 2895 | 100 | Minus |
| 3L | 28110227 | 3L | 14125084..14125251 | 865..698 | 840 | 100 | Minus |
| 3L | 28110227 | 3L | 14118444..14118574 | 1059..929 | 655 | 100 | Minus |
| 3L | 28110227 | 3L | 14176689..14176918 | 984..755 | 550 | 82.6 | Minus |
| 3L | 28110227 | 3L | 14116265..14116361 | 1154..1058 | 485 | 100 | Minus |
| 3L | 28110227 | 3L | 14106544..14106717 | 928..755 | 420 | 82.8 | Minus |
| 3L | 28110227 | 3L | 14118630..14118698 | 931..863 | 345 | 100 | Minus |
| 2L | 23513712 | 2L | 8827040..8827265 | 770..995 | 335 | 76.5 | Plus |
Blast to na_te.dros performed 2014-11-26 22:07:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6911 | 137..325 | 290 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2539 | 130..381 | 263 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6923 | 136..325 | 255 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6923 | 136..301 | 252 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2541 | 137..344 | 237 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6959 | 219..428 | 234 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2354..2642 | 136..427 | 218 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2502 | 137..325 | 214 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6964 | 136..316 | 212 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6952 | 137..297 | 198 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2607..2922 | 107..422 | 193 | 53.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2536 | 137..279 | 185 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2382..2539 | 137..296 | 183 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6817..6944 | 136..260 | 182 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2778..2961 | 119..301 | 180 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2436..2622 | 129..313 | 155 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6830..7007 | 134..301 | 147 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2831..2989 | 136..296 | 144 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2785..3031 | 141..387 | 137 | 53 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6826 | 353..420 | 135 | 68.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1124..1150 | 137..163 | 126 | 96.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6893..7059 | 137..305 | 120 | 55.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1099..1137 | 125..162 | 120 | 82.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2354..2427 | 349..422 | 118 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2370 | 362..418 | 116 | 69 | Plus |
BO07818.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:23 Download gff for
BO07818.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox21b-RA | 1..1716 | 17..1732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:05:37 Download gff for
BO07818.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox21b-RA | 305..2026 | 7..1729 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:47:40 Download gff for
BO07818.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox21b-RA | 314..2026 | 17..1731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:44:05 Download gff for
BO07818.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox21b-RA | 314..2026 | 17..1731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:52:02 Download gff for
BO07818.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox21b-RA | 314..2026 | 17..1731 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:52:02 Download gff for
BO07818.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14113023..14113602 | 1154..1731 | 99 | <- | Minus |
| 3L | 14116266..14116360 | 1059..1153 | 100 | <- | Minus |
| 3L | 14118445..14118572 | 931..1058 | 100 | <- | Minus |
| 3L | 14118631..14118697 | 864..930 | 100 | <- | Minus |
| 3L | 14125086..14125249 | 700..863 | 100 | <- | Minus |
| 3L | 14125390..14126072 | 17..699 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:47:40 Download gff for
BO07818.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14106123..14106702 | 1154..1731 | 99 | <- | Minus |
| arm_3L | 14109366..14109460 | 1059..1153 | 100 | <- | Minus |
| arm_3L | 14111545..14111672 | 931..1058 | 100 | <- | Minus |
| arm_3L | 14111731..14111797 | 864..930 | 100 | <- | Minus |
| arm_3L | 14118186..14118349 | 700..863 | 100 | <- | Minus |
| arm_3L | 14118490..14119172 | 17..699 | 100 | | Minus |
BO07818.pep Sequence
Translation from 16 to 1747
> BO07818.pep
MMERLSTHLSLTGLSLAHPLQTHLGSGGGTHHLGQLAAAVHQQQQQQQQS
DQGLGHSHHLHGQQLSLNHQHHHPHQSPQHQQQHQHHPCSSNSSNGSPNG
STGLGLHPHSALHLAHHHSQLHQHHPAGQQQQHSQPPVSSSSTSHHSQSQ
ALSHQTHSNGSSQLGGGSASGAGSVAGGAANSHHSAPASSSVMAAAAAAH
LHHNSQASPISNLHQNMGSLMNSGSSASDVFFSLMIQNTTKRQNEEHIKR
PMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTEEEKRPFIDE
AKRLRAMHMKEHPDYKYRPRRKPKALRRDGYPYPMPYPSVPVEALRAGIT
PGYFAPGPTAAAYHLGSHLGQTSTPTTTQATLSGQMDKFALERSSYLSNS
SQASAYSAYLDPSVLTKAYFDSKMYQDRAANYAFDISKIYGAQQHAAAHH
QQQQQQQQQQQQQQQQLLLSGGGGSGGGGSASSHNNNSSSGLDDRDATPQ
LEAVESKPHLHSPSDVGLDYAQYAQQYGGQLAAAAGGAVGGGAAGAAGGS
AGGGSGGATAADFRRPLTVIFASFLDH
BO07818.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:44:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sox21b-PC | 587 | CG32139-PC | 1..571 | 1..571 | 3014 | 100 | Plus |
| Sox21b-PB | 571 | CG32139-PB | 1..571 | 1..571 | 3014 | 100 | Plus |
| Sox21b-PA | 571 | CG32139-PA | 1..571 | 1..571 | 3014 | 100 | Plus |
| SoxN-PA | 572 | CG18024-PA | 14..487 | 73..542 | 520 | 32.5 | Plus |
| SoxN-PB | 761 | CG18024-PB | 14..487 | 73..542 | 520 | 32.5 | Plus |
