Clone Sequence Records
BO07821.3prime Sequence
920 bp (821 high quality bases) assembled on 2006-01-06
> BO07821.3prime
ATGGTCTAGAAAGCTTGCGCGGGTTGAGAGCGGGGTGCGAATCTGGAGGC
TGGAGGTGGGGCCCAGCAGGACGACCAGCAGGACCGCCAGGAGCAACAGG
GGCAGAGGGGGCAGGAGCAGCCTCGAGCCCAGCTCGTGCTGCATGGCCGC
GTGCTGCTCACTTTTAATGATATGCACAAAGACGCTGTCAGAATTCGAGT
TGTCCGCGGAGCAGGTGTAGTTGCCCGAGTCCGTGTGCTGGACTCGCGAT
ATCACCAGGTTGCTGGTCTTCATCTGCTGCTCGGACTCTACGCGGATGCC
ACCCCGCGCCGAGTCGCTTACCAGCTCCGTGTCCTTGTGCCACAGCATGT
GCGTGTAGGGTCCTGGAGCCTGGGGTGCGATGCACGTCAGATTGATGTCG
CTGCCACTCTGGATGAACAGCTCGCGGTTGGCCAGGATCTGAGCCTTGGA
GGTCACGACGACCAGCTTGTAGGCCAGACTGATCTTGGGCTCCGTGGACA
CCTGGCACTCGTAGACGCCCGCATCTCTCTGCTGCACCGAAACGATCTTG
AGCACCCACTCGTCGGAGTTGTCGATGTGCCGCGCCAGAAAGCGCTGATC
GTTCGTGTAGGTCATGATGCCGATGGTCAGGATGTGGAGATCCCGTTGTC
GTATCCAGGACACCGCCCTGTCGCCCAGGTGGCGAACGCGGCAGTGGAGA
CGGGCGGTGGTGCCCAAAGCTGCAATAACCTCCCGATCTGTTGTGTTGTC
AAACACGGGATCGATGGCATCGTAATTATCTGGTATCAAGTTGGACAATT
CCTCGGCGGCGGCCAGATGGCCGAAGTATTGGCTGCTGCGCCGGCTCTGC
TTGTCGACTGGAGCGGGTAATCCCATGATCACGAGCAGCGCCATAAAGTA
TTCCACCAACATTTCATGCG
BO07821.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5308-PA | 1011 | dpr5-RA | 107..1008 | 920..19 | 4485 | 99.8 | Minus |
CG5308-PB | 897 | dpr5-RB | 1..894 | 912..19 | 4445 | 99.8 | Minus |
CG33512-PA | 891 | dpr4-RA | 297..332 | 514..479 | 155 | 97.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:45:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr5-RB | 1419 | CG5308-RB | 78..979 | 920..19 | 4495 | 99.9 | Minus |
dpr5-RA | 1817 | CG5308-RA | 476..1377 | 920..19 | 4495 | 99.9 | Minus |
dpr4-RB | 2994 | CG33512-RB | 1201..1515 | 696..382 | 330 | 74.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:44:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11503411..11503780 | 822..453 | 1850 | 100 | Minus |
3R | 32079331 | 3R | 11504295..11504552 | 452..195 | 1290 | 100 | Minus |
3R | 32079331 | 3R | 11505274..11505449 | 194..19 | 880 | 100 | Minus |
3R | 32079331 | 3R | 11501147..11501246 | 920..821 | 485 | 99 | Minus |
3R | 32079331 | 3R | 11535995..11536180 | 479..664 | 255 | 75.8 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:45:02 has no hits.
BO07821.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:01 Download gff for
BO07821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr5-PA | 107..1011 | 15..920 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:16:59 Download gff for
BO07821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5308-PA | 107..1011 | 15..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:10:47 Download gff for
BO07821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr5-RA | 476..1382 | 13..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:21:28 Download gff for
BO07821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr5-RA | 476..1382 | 13..920 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:21:28 Download gff for
BO07821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11501147..11501245 | 822..920 | 98 | -> | Minus |
3R | 11503412..11503780 | 453..821 | 100 | -> | Minus |
3R | 11504295..11504552 | 195..452 | 100 | -> | Minus |
3R | 11505274..11505454 | 13..194 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:10:47 Download gff for
BO07821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7326869..7326967 | 822..920 | 98 | -> | Minus |
arm_3R | 7329134..7329502 | 453..821 | 100 | -> | Minus |
arm_3R | 7330017..7330274 | 195..452 | 100 | -> | Minus |
arm_3R | 7330996..7331176 | 13..194 | 98 | | Minus |
BO07821.5prime Sequence
955 bp (892 high quality bases) assembled on 2006-01-06
> BO07821.5prime
GAAGTTATCAGTCGACATGAGATGGCGGCACGCAGTTCGCGCTACATTTA
CTTCGACCACGGCCACCGAATCTAGTCCGCTCATAGGAAAAGTTATAAGT
AATTCGAGAGCCCCACAAATTGCGCATGAAATGTTGGTGGAATACTTTAT
GGCGCTGCTCGTGATCATGGGATTAACCGCTCCAGTCGACAAGCAGAGCC
GGCGCAGCAGCCAATACTTCGGCCATCTGGCCGCCGCCGAGGAATTGTCC
AACTTGATACCAGATAATTACGATGCCATCGATCCCGTGTTTGACAACAC
AACAGATCGGGAGGTTATTGCAGCTTTGGGCACCACCGCCCGTCTCCACT
GCCGCGTTCGCCACCTGGGCGACAGGGCGGTGTCCTGGATACGACAACGG
GATCTCCACATCCTGACCATCGGCATCATGACCTACACGAACGATCAGCG
CTTTCTGGCGCGGCACATCGACAACTCCGACGAGTGGGTGCTCAAGATCG
TTTCGGTGCAGCAGAGAGATGCGGGCGTCTACGAGTGCCAGGTGTCCACG
GAGCCCAAGATCAGTCTGGCCTACAAGCTGGTCGTCGTGACCTCCAAGGC
TCAGATCCTGGCCAACCGCGAGCTGTTCATCCAGAGTGGCAGCGACATCA
ATCTGACGTGCATCGCACCCCAGGCTCCAGGACCCTACACGCACATGCTG
TGGCACAAGGACACGGAGCTGGTAAGCGACTCGGCGCGGGGTGGCATCCG
CGTAGAGTCCGAGCAGCAGATGAAGACCAGCAACCTGGTGATATCGCGAG
TCCAGCACACGGACTCGGGGCACTACACCTGCTCCGCGGACAACTCGAAT
TCTGACAGCGTCTTTGTGCATATCATTAAAAGTGAGCAGCACGCGGCCAT
GCAGCACGAGCTGGGCTCGAGGCTGCTCCTGCCCCCTCTGCCCCTGTTGC
TCCTG
BO07821.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5308-PA | 1011 | dpr5-RA | 1..939 | 17..955 | 4645 | 99.7 | Plus |
CG5308-PB | 897 | dpr5-RB | 1..825 | 131..955 | 4075 | 99.7 | Plus |
CG33512-PA | 891 | dpr4-RA | 297..332 | 529..564 | 155 | 97.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:10:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr5-RA | 1817 | CG5308-RA | 369..1308 | 16..955 | 4670 | 99.8 | Plus |
dpr5-RB | 1419 | CG5308-RB | 46..910 | 91..955 | 4295 | 99.8 | Plus |
dpr4-RB | 2994 | CG33512-RB | 1201..1515 | 347..661 | 330 | 74.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:10:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11503411..11503780 | 221..590 | 1850 | 100 | Plus |
3R | 32079331 | 3R | 11504295..11504552 | 591..848 | 1260 | 99.2 | Plus |
3R | 32079331 | 3R | 11501115..11501246 | 91..222 | 660 | 100 | Plus |
3R | 32079331 | 3R | 11505274..11505380 | 849..955 | 535 | 100 | Plus |
3R | 32079331 | 3R | 11500352..11500428 | 16..92 | 385 | 100 | Plus |
3R | 32079331 | 3R | 11535995..11536180 | 564..379 | 255 | 75.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:10:15 has no hits.
BO07821.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:02 Download gff for
BO07821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr5-PA | 1..939 | 17..955 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:00 Download gff for
BO07821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5308-PA | 1..939 | 17..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:09:08 Download gff for
BO07821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr5-RA | 367..1308 | 13..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:30 Download gff for
BO07821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr5-RA | 367..1308 | 13..955 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:30 Download gff for
BO07821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11505274..11505380 | 849..955 | 100 | | Plus |
3R | 11500350..11500428 | 13..92 | 98 | -> | Plus |
3R | 11501117..11501245 | 93..221 | 100 | -> | Plus |
3R | 11503412..11503780 | 222..590 | 100 | -> | Plus |
3R | 11504295..11504552 | 591..848 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:09:08 Download gff for
BO07821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7326839..7326967 | 93..221 | 100 | -> | Plus |
arm_3R | 7329134..7329502 | 222..590 | 100 | -> | Plus |
arm_3R | 7326072..7326150 | 13..92 | 98 | -> | Plus |
arm_3R | 7330017..7330274 | 591..848 | 99 | -> | Plus |
arm_3R | 7330996..7331102 | 849..955 | 100 | | Plus |
BO07821.complete Sequence
1042 bp (1042 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630943
> BO07821.complete
GAAGTTATCAGTCGACATGAGATGGCGGCACGCAGTTCGCGCTACATTTA
CTTCGACCACGGCCACCGAATCTAGTCCGCTCATAGGAAAAGTTATAAGT
AATTCGAGAGCCCCACAAATTGCGCATGAAATGTTGGTGGAATACTTTAT
GGCGCTGCTCGTGATCATGGGATTAACCGCTCCAGTCGACAAGCAGAGCC
GGCGCAGCAGCCAATACTTCGGCCATCTGGCCGCCGCCGAGGAATTGTCC
AACTTGATACCAGATAATTACGATGCCATCGATCCCGTGTTTGACAACAC
AACAGATCGGGAGGTTATTGCAGCTTTGGGCACCACCGCCCGTCTCCACT
GCCGCGTTCGCCACCTGGGCGACAGGGCGGTGTCCTGGATACGACAACGG
GATCTCCACATCCTGACCATCGGCATCATGACCTACACGAACGATCAGCG
CTTTCTGGCGCGGCACATCGACAACTCCGACGAGTGGGTGCTCAAGATCG
TTTCGGTGCAGCAGAGAGATGCGGGCGTCTACGAGTGCCAGGTGTCCACG
GAGCCCAAGATCAGTCTGGCCTACAAGCTGGTCGTCGTGACCTCCAAGGC
TCAGATCCTGGCCAACCGCGAGCTGTTCATCCAGAGTGGCAGCGACATCA
ATCTGACGTGCATCGCACCCCAGGCTCCAGGACCCTACACGCACATGCTG
TGGCACAAGGACACGGAGCTGGTAAGCGACTCGGCGCGGGGTGGCATCCG
CGTAGAGTCCGAGCAGCAGATGAAGACCAGCAACCTGGTGATATCGCGAG
TCCAGCACACGGACTCGGGCAACTACACCTGCTCCGCGGACAACTCGAAT
TCTGACAGCGTCTTTGTGCATATCATTAAAAGTGAGCAGCACGCGGCCAT
GCAGCACGAGCTGGGCTCGAGGCTGCTCCTGCCCCCTCTGCCCCTGTTGC
TCCTGGCGGTCCTGCTGGTCGTCCTGCTGGGCCCCACCTCCAGCCTCCAG
ATTCGCACCCCGCTCTCAACCCGCGCAAGCTTTCTAGACCAT
BO07821.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:09:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr5-RA | 1011 | CG5308-PA | 1..1008 | 17..1024 | 5040 | 100 | Plus |
dpr5-RB | 897 | CG5308-PB | 1..894 | 131..1024 | 4470 | 100 | Plus |
dpr4-RB | 972 | CG33512-PB | 196..510 | 347..661 | 330 | 73.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:09:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr5-RA | 1817 | CG5308-RA | 369..1377 | 16..1024 | 5045 | 100 | Plus |
dpr5-RB | 1419 | CG5308-RB | 46..979 | 91..1024 | 4670 | 100 | Plus |
dpr4-RB | 2994 | CG33512-RB | 1201..1515 | 347..661 | 330 | 73.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:09:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11503411..11503780 | 221..590 | 1850 | 100 | Plus |
3R | 32079331 | 3R | 11504295..11504552 | 591..848 | 1290 | 100 | Plus |
3R | 32079331 | 3R | 11505274..11505449 | 849..1024 | 880 | 100 | Plus |
3R | 32079331 | 3R | 11501115..11501246 | 91..222 | 660 | 100 | Plus |
3R | 32079331 | 3R | 11500352..11500428 | 16..92 | 385 | 100 | Plus |
3R | 32079331 | 3R | 11535995..11536180 | 564..379 | 255 | 75.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:09:22 has no hits.
BO07821.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:39 Download gff for
BO07821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr5-RA | 1..1011 | 17..1028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:15 Download gff for
BO07821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr5-RA | 367..1382 | 13..1030 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:23 Download gff for
BO07821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr5-RA | 370..1377 | 17..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:40 Download gff for
BO07821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr5-RA | 367..1382 | 13..1030 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:00 Download gff for
BO07821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr5-RA | 370..1377 | 17..1026 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:00 Download gff for
BO07821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11500353..11500428 | 17..92 | 100 | -> | Plus |
3R | 11501117..11501245 | 93..221 | 100 | -> | Plus |
3R | 11503412..11503780 | 222..590 | 100 | -> | Plus |
3R | 11504295..11504552 | 591..848 | 100 | -> | Plus |
3R | 11505274..11505449 | 849..1026 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:23 Download gff for
BO07821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7326075..7326150 | 17..92 | 100 | -> | Plus |
arm_3R | 7326839..7326967 | 93..221 | 100 | -> | Plus |
arm_3R | 7329134..7329502 | 222..590 | 100 | -> | Plus |
arm_3R | 7330017..7330274 | 591..848 | 100 | -> | Plus |
arm_3R | 7330996..7331171 | 849..1026 | 98 | | Plus |
BO07821.pep Sequence
Translation from 16 to 1042
> BO07821.pep
MRWRHAVRATFTSTTATESSPLIGKVISNSRAPQIAHEMLVEYFMALLVI
MGLTAPVDKQSRRSSQYFGHLAAAEELSNLIPDNYDAIDPVFDNTTDREV
IAALGTTARLHCRVRHLGDRAVSWIRQRDLHILTIGIMTYTNDQRFLARH
IDNSDEWVLKIVSVQQRDAGVYECQVSTEPKISLAYKLVVVTSKAQILAN
RELFIQSGSDINLTCIAPQAPGPYTHMLWHKDTELVSDSARGGIRVESEQ
QMKTSNLVISRVQHTDSGNYTCSADNSNSDSVFVHIIKSEQHAAMQHELG
SRLLLPPLPLLLLAVLLVVLLGPTSSLQIRTPLSTRASFLDH
BO07821.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr5-PA | 336 | CG5308-PA | 1..336 | 1..336 | 1708 | 100 | Plus |
dpr5-PB | 298 | CG5308-PB | 1..298 | 39..336 | 1515 | 100 | Plus |
dpr4-PB | 323 | CG33512-PB | 45..279 | 90..324 | 670 | 56.2 | Plus |
dpr8-PB | 344 | CG32600-PB | 42..297 | 90..336 | 485 | 41.8 | Plus |
dpr8-PA | 344 | CG32600-PA | 42..297 | 90..336 | 485 | 41.8 | Plus |