Clone Sequence Records
BO07826.3prime Sequence
816 bp (781 high quality bases) assembled on 2006-01-06
> BO07826.3prime
ATGGTCTAGAAAGCTTGCTGGAGAGCCCTCAAATGAATCGTACAGAAATC
CCAAGCCTAACAGGGCCTTATCCAATTGAGGCACTTTCAGTTCTTCAGGT
TGAGGCTCCAAAACCAGCAGTTGGTCGATGCTATAGCGCTGCACGATCTT
TCCATTTTTATTGCACAGGTTGTTCAATGGTACCGGCGGATTTCGACGGA
TTGTCCAGTTTTGAAGGGGTCGGAAGTGTGTGAGATTTCCCCTGCGCTTC
TCCGTATCGCATTGTTTAGCAGGTGGACTAAAGCGATCGCACAGACGAAT
AACTCCCGACGGAGATATGTTCACCACATTGGAGGTCACCAATGGTTTTG
GTGGCACAGCAGATTGCGAAGGGTTCGCATCCTGAACACCCATCTGATTT
TTCTTTTCAGCTTCCATCTTAGCCAAATGTTTGGCACGACATCGCTCGTC
CCATTCCTTGGTGGTTGGTATGTACCTCTTTTTGGTAACTATGGGCACTT
CATTTGTCTTCTCCGGATGCTGAGGCATAGGTTTAGCAGGTTCATTAGGC
TTATTAGATTCATTGGGTGCATTATCAAAACAAATCTTCTCCTCCTTGAG
CTGCTCTTTCTTCACTTGCGACTGCTTGCTGTTTGTCATTTCGCGAAGGA
TACGCTCGATACGCTCTCTCTTCGCTGCCCTTAAACGGTCCACTCTGATC
CTTTCATTTGGCGTGAACTTTATTGGAGATCGTGAGATATTTATAATTGG
CGGCACGTTCTTTGAGTTTTCATTGCCCTCCGTGGGGGCAATGACAGGAT
CCCTCATTCTACGCTG
BO07826.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6304-PA | 1269 | CG6304-RA | 469..1266 | 816..19 | 3990 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:36:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6304-RB | 1657 | CG6304-RB | 727..1524 | 816..19 | 3990 | 100 | Minus |
| CG6304-RA | 1526 | CG6304-RA | 668..1465 | 816..19 | 3990 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:36:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17011609..17012406 | 19..816 | 3990 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:36:34 has no hits.
BO07826.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:11 Download gff for
BO07826.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6304-PA | 469..1269 | 15..816 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:13 Download gff for
BO07826.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6304-PA | 469..1269 | 15..816 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:05:07 Download gff for
BO07826.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6304-RA | 588..1388 | 15..816 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:50:46 Download gff for
BO07826.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6304-RA | 668..1468 | 15..816 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:50:46 Download gff for
BO07826.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17011610..17012406 | 20..816 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:05:07 Download gff for
BO07826.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17011610..17012406 | 20..816 | 100 | | Plus |
BO07826.5prime Sequence
813 bp (787 high quality bases) assembled on 2006-01-06
> BO07826.5prime
GAAGTTATCAGTCGACATGTACAACAATATTAAGGGCCTACACATAAATG
AATACCAGAGGGAGAATGGAGATAATACCAGAAAGCTGGCGTGTGAAGGT
ACAGTGAAGCTAAACGCCAATGCCCAAGAATTTGTGCCACGTTACAAGAG
GGAACAACCAGCAAAAGATGATGCTATAGTTGGTAACAGTAACATGAGCA
ACACCAATAACGACGACCAAAAACCAAAATCTAACCTTATGTTGCCGTGG
AAAGGATTTCCGAATAAATCTCAAAAACCTTCTCGCAATGTGGACTACAT
AGTTCTACCGAGCACCAAAAGATTTAAAAAGCCCATTGGCCAACAACTCG
TGGAAAATGTTTCCACTACGCCCTCAAAAGTCCATTTAAATGATCCTGTT
CCAGCTGGAAATCGCATTGATCACGAGGAAAGGCGCCGCGAACACGATAG
AAAAATCGCTGTGGAAGCCTTAAAGTTGGCCGAACAGCGTAGAATGAGGG
ATCCTGTCATTGCCCCCACGGAGGGCAATGAAAACTCAAAGAACGTGCCG
CCAATTATAAATATCTCACGATCTCCAATAAAGTTCACGCCAAATGAAAG
GATCAGAGTGGACCGTTTAAGGGCAGCGAAGAGAGAGCGTATCGAGCGTA
TCCTTCGCGAAATGACAAACAGCAAGCAGTCGCAAGTGAAGAAAGAGCAG
CTCAAGGAGGAGAAGATTTGTTTTGATAATGCACCCAATGAATCTAATAA
GCCTAATGAACCTGCTAAACCTATGCCTCAGCATCCGGAGAAGACAAATG
AAGTGCCCATAGT
BO07826.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6304-PA | 1269 | CG6304-RA | 1..797 | 17..813 | 3985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:29:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6304-RB | 1657 | CG6304-RB | 258..1055 | 16..813 | 3990 | 100 | Plus |
| CG6304-RA | 1526 | CG6304-RA | 199..996 | 16..813 | 3990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:29:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17012078..17012612 | 813..279 | 2675 | 100 | Minus |
| 2L | 23513712 | 2L | 17012674..17012936 | 278..16 | 1315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:29:50 has no hits.
BO07826.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:12 Download gff for
BO07826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6304-PA | 1..797 | 17..813 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:14 Download gff for
BO07826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6304-PA | 1..797 | 17..813 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:12:55 Download gff for
BO07826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6304-RA | 115..916 | 10..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:09:31 Download gff for
BO07826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6304-RA | 195..996 | 10..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:09:31 Download gff for
BO07826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17012078..17012612 | 279..813 | 100 | <- | Minus |
| 2L | 17012674..17012940 | 10..278 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:12:55 Download gff for
BO07826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17012674..17012940 | 10..278 | 98 | | Minus |
| arm_2L | 17012078..17012612 | 279..813 | 100 | <- | Minus |
BO07826.complete Sequence
1300 bp (1300 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630944
> BO07826.complete
GAAGTTATCAGTCGACATGTACAACAATATTAAGGGCCTACACATAAATG
AATACCAGAGGGAGAATGGAGATAATACCAGAAAGCTGGCGTGTGAAGGT
ACAGTGAAGCTAAACGCCAATGCCCAAGAATTTGTGCCACGTTACAAGAG
GGAACAACCAGCAAAAGATGATGCTATAGTTGGTAACAGTAACATGAGCA
ACACCAATAACGACGACCAAAAACCAAAATCTAACCTTATGTTGCCGTGG
AAAGGATTTCCGAATAAATCTCAAAAACCTTCTCGCAATGTGGACTACAT
AGTTCTACCGAGCACCAAAAGATTTAAAAAGCCCATTGGCCAACAACTCG
TGGAAAATGTTTCCACTACGCCCTCAAAAGTCCATTTAAATGATCCTGTT
CCAGCTGGAAATCGCATTGATCACGAGGAAAGGCGCCGCGAACACGATAG
AAAAATCGCTGTGGAAGCCTTAAAGTTGGCCGAACAGCGTAGAATGAGGG
ATCCTGTCATTGCCCCCACGGAGGGCAATGAAAACTCAAAGAACGTGCCG
CCAATTATAAATATCTCACGATCTCCAATAAAGTTCACGCCAAATGAAAG
GATCAGAGTGGACCGTTTAAGGGCAGCGAAGAGAGAGCGTATCGAGCGTA
TCCTTCGCGAAATGACAAACAGCAAGCAGTCGCAAGTGAAGAAAGAGCAG
CTCAAGGAGGAGAAGATTTGTTTTGATAATGCACCCAATGAATCTAATAA
GCCTAATGAACCTGCTAAACCTATGCCTCAGCATCCGGAGAAGACAAATG
AAGTGCCCATAGTTACCAAAAAGAGGTACATACCAACCACCAAGGAATGG
GACGAGCGATGTCGTGCCAAACATTTGGCTAAGATGGAAGCTGAAAAGAA
AAATCAGATGGGTGTTCAGGATGCGAACCCTTCGCAATCTGCTGTGCCAC
CAAAACCATTGGTGACCTCCAATGTGGTGAACATATCTCCGTCGGGAGTT
ATTCGTCTGTGCGATCGCTTTAGTCCACCTGCTAAACAATGCGATACGGA
GAAGCGCAGGGGAAATCTCACACACTTCCGACCCCTTCAAAACTGGACAA
TCCGTCGAAATCCGCCGGTACCATTGAACAACCTGTGCAATAAAAATGGA
AAGATCGTGCAGCGCTATAGCATCGACCAACTGCTGGTTTTGGAGCCTCA
ACCTGAAGAACTGAAAGTGCCTCAATTGGATAAGGCCCTGTTAGGCTTGG
GATTTCTGTACGATTCATTTGAGGGCTCTCCAGCAAGCTTTCTAGACCAT
BO07826.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:56:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6304-RB | 1269 | CG6304-PB | 1..1266 | 17..1282 | 6330 | 100 | Plus |
| CG6304-RA | 1269 | CG6304-PA | 1..1266 | 17..1282 | 6330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:56:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6304-RB | 1657 | CG6304-RB | 258..1524 | 16..1282 | 6335 | 100 | Plus |
| CG6304-RA | 1526 | CG6304-RA | 199..1465 | 16..1282 | 6335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:56:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17011609..17012612 | 1282..279 | 5020 | 100 | Minus |
| 2L | 23513712 | 2L | 17012674..17012936 | 278..16 | 1315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:56:22 has no hits.
BO07826.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:41 Download gff for
BO07826.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6304-RA | 1..1269 | 17..1286 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:16 Download gff for
BO07826.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6304-RA | 115..1388 | 10..1286 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:24 Download gff for
BO07826.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6304-RA | 120..1385 | 17..1284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:41 Download gff for
BO07826.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6304-RA | 115..1388 | 10..1286 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:34:40 Download gff for
BO07826.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6304-RA | 200..1465 | 17..1284 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:34:40 Download gff for
BO07826.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17011607..17012612 | 279..1284 | 99 | <- | Minus |
| 2L | 17012674..17012935 | 17..278 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:24 Download gff for
BO07826.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17011607..17012612 | 279..1284 | 99 | <- | Minus |
| arm_2L | 17012674..17012935 | 17..278 | 100 | | Minus |
BO07826.pep Sequence
Translation from 16 to 1300
> BO07826.pep
MYNNIKGLHINEYQRENGDNTRKLACEGTVKLNANAQEFVPRYKREQPAK
DDAIVGNSNMSNTNNDDQKPKSNLMLPWKGFPNKSQKPSRNVDYIVLPST
KRFKKPIGQQLVENVSTTPSKVHLNDPVPAGNRIDHEERRREHDRKIAVE
ALKLAEQRRMRDPVIAPTEGNENSKNVPPIINISRSPIKFTPNERIRVDR
LRAAKRERIERILREMTNSKQSQVKKEQLKEEKICFDNAPNESNKPNEPA
KPMPQHPEKTNEVPIVTKKRYIPTTKEWDERCRAKHLAKMEAEKKNQMGV
QDANPSQSAVPPKPLVTSNVVNISPSGVIRLCDRFSPPAKQCDTEKRRGN
LTHFRPLQNWTIRRNPPVPLNNLCNKNGKIVQRYSIDQLLVLEPQPEELK
VPQLDKALLGLGFLYDSFEGSPASFLDH
BO07826.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6304-PB | 422 | CG6304-PB | 1..422 | 1..422 | 2228 | 100 | Plus |
| CG6304-PA | 422 | CG6304-PA | 1..422 | 1..422 | 2228 | 100 | Plus |
| CG9777-PA | 413 | CG9777-PA | 76..410 | 46..409 | 320 | 30.3 | Plus |
