Clone Sequence Records
BO07828.3prime Sequence
956 bp (810 high quality bases) assembled on 2006-01-06
> BO07828.3prime
ATGGTCTAGAAAGCTTGCCTTGCTCTCGATGTTCTTGAGCGGCACCATTT
GCTCCGGATCGTCGGGATATACGCTATTCTGGCGCTTTTTGCGACCAGCA
CACTGACTGAACCAAGTATCTCCCTTTCCGAAGTTCTCTCCATCCTCAAT
GGACTCGGGCATGGGCTGGTTCATTGTCTCCGGCAGGAACATAACCCAGA
AGCCCGAGATCAGGGCCACCACGCCGAACAGCACGGCCGGTATCTTCGGA
TCAAATGAGTCCAGCAATGTAATGAGCGGAGTAAGGGCTCCCGACAAACG
GGCACACATCGATCCCAATCCCATGGCCGAGTTCCGCACCACGGTGGGAA
ACAGTTCGGCTGAGTAATTGTAGATTACGGCAAAGGAACCGGCGATGAGG
AGCTTTCCTGCCATTACCACCGCCGTGGAGGTGGTGCTGCCCTGGGCAAT
GTAGGCGGCCACAATGCAGCATAGACCGCCACCCAACATCAGGGTGGAGG
TGATCGATCGACGACCCAGGCGATCTAGGACGAACACAATGGTTATGTAG
CTGGGGAACTCCACGAGGCCCATGATGAACAGGATCAGGTAGGGATTTCC
ATACAGCTTGCCGGCACTGAGCGATAGTCCGTAATAAACCAGAGAATTGG
CGAACCAGCAGAGGCACACGTTCAAAGTCTTCATCCTCAAGTTGGGCGTG
CGGAAGAGGTCGCTCAATCCGGCGCTGGATTTTTCTTCGGCCGCCGCCTG
CTGTTTGGCTTTCTGCACATAGTACTCCTTGTCCACCGGGATGCCCGATC
CGTTGATTCTCANGCCCTTGGCCACAATATCCACCGCCTCGGCGGCACGT
CCCTGCATCCACAGCCAGCGCGGAGATTCATCGAGCCACCACCAGTGGCC
CAGGAACAGACAGCCATGCAGTCCGTAGATCACTTGGAGCCACTGGCGGT
CAGGGA
BO07828.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6126-PA | 1668 | CG6126-RA | 728..1665 | 956..19 | 4671 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:34:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6126-RA | 2126 | CG6126-RA | 978..1915 | 956..19 | 4679 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:33:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16198211..16199148 | 19..956 | 4679 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:34:00 has no hits.
BO07828.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:15 Download gff for
BO07828.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6126-PA | 729..1668 | 18..955 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:19 Download gff for
BO07828.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6126-PA | 729..1668 | 18..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:37:34 Download gff for
BO07828.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6126-RA | 976..1912 | 19..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:53 Download gff for
BO07828.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6126-RA | 979..1915 | 19..955 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:53 Download gff for
BO07828.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16198211..16199147 | 19..955 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:37:34 Download gff for
BO07828.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12023933..12024869 | 19..955 | 99 | | Plus |
BO07828.5prime Sequence
861 bp (844 high quality bases) assembled on 2006-01-06
> BO07828.5prime
GAAGTTATCAGTCGACATGGCTGTGGATTATGTACTGGAGGACCTGATGG
GGAAACTTGGGGAGTTTGGAAAGTACCAGTTCCTGCAGTTCTTCCTGCAG
GTGCTCTCCGGCCTGACCGCTGGCATGCACATGCTATCGCTGGTCACGGT
GGCCGCCGTGCCTGAGCATCGCTGCTTCATCGAGGGCGTGGATAACAGCA
GCTTGTCGGTGACACCATGGAACTCGAGCGCTATCCTGGCCGCCATTCCG
CTGAAGCCCAATGGCGAGCTAGAGTCCTGCCTCATGTTCGATCCCAGTAG
TCCTGGCACCAATACCACCATCAATTGCGAACGTTACGTATACGACACGA
CGTACTACAAGACTTCGCGCACCATCGACTGGAACTTTGTGTGCGATCGC
CGCTGGATGGGAGCCATTGTGCAGACCGTGTTCATGCTGGGCGTGTTCAC
AGGCGCAGTCACCCTTGGCGGACTCGCCGACAAAGTGGGTCGGAAAACCG
TGTTCTGCTGGTCGGCCCTGTTCCAATTGATCATCGGTGTGGGTGTGGCC
TTCATTCCCGAGTACTTCTCATTCATGGTGGCTCGCTACCTGCTGGGCAT
TGTGGGATCAGCGGGTGCCTACATCTGTGGGTTCGTGCTGACCATGGAAC
TGGTGGGACCTACCAAGCGTACTGTGTGCGGCATTACCTTCCAGGCTGTT
TTCGCTGGTGGCATCATGTTGGTGGCCGGATGGGGAGCACTCATCCCTGA
CCGCCAGTGGCTCCAAGTGATCTACGGACTGCATGGCTGTCTGTTCCTGG
GCCACTGGTGGTGGCTCGATGAATCTCCGCGCTGGCTGTGGATGCAGGGA
CGTGCCGCCGA
BO07828.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6126-PA | 1668 | CG6126-RA | 1..845 | 17..861 | 4225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:36:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6126-RA | 2126 | CG6126-RA | 249..1095 | 15..861 | 4235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:36:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16199259..16199895 | 695..59 | 3185 | 100 | Minus |
| 3R | 32079331 | 3R | 16199031..16199199 | 861..693 | 845 | 100 | Minus |
| 3R | 32079331 | 3R | 16202785..16202835 | 65..15 | 240 | 98 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:36:37 has no hits.
BO07828.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:17 Download gff for
BO07828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6126-PA | 1..844 | 17..860 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:20 Download gff for
BO07828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6126-PA | 1..844 | 17..860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:05:10 Download gff for
BO07828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6126-RA | 241..1091 | 7..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:50:50 Download gff for
BO07828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6126-RA | 244..1094 | 7..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:50:50 Download gff for
BO07828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16199032..16199197 | 695..860 | 100 | <- | Minus |
| 3R | 16199260..16199894 | 60..694 | 100 | <- | Minus |
| 3R | 16202791..16202840 | 7..59 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:05:10 Download gff for
BO07828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12024754..12024919 | 695..860 | 100 | <- | Minus |
| arm_3R | 12024982..12025616 | 60..694 | 100 | <- | Minus |
| arm_3R | 12028513..12028562 | 7..59 | 92 | | Minus |
BO07828.complete Sequence
1699 bp assembled on 2007-03-23
GenBank Submission: FJ630945
> BO07828.complete
GAAGTTATCAGTCGACATGGCTGTGGATTATGTACTGGAGGACCTGATGG
GGAAACTTGGGGAGTTTGGAAAGTACCAGTTCCTGCAGTTCTTCCTGCAG
GTGCTCTCCGGCCTGACCGCTGGCATGCACATGCTATCGCTGGTCACGGT
GGCCGCCGTGCCTGAGCATCGCTGCTTCATCGAGGGCGTGGATAACAGCA
GCTTGTCGGTGACACCATGGAACTCGAGCGCTATCCTGGCCGCCATTCCG
CTGAAGCCCAATGGCGAGCTAGAGTCCTGCCTCATGTTCGATCCCAGTAG
TCCTGGCACCAATACCACCATCAATTGCGAACGTTACGTATACGACACGA
CGTACTACAAGACTTCGCGCACCATCGACTGGAACTTTGTGTGCGATCGC
CGCTGGATGGGAGCCATTGTGCAGACCGTGTTCATGCTGGGCGTGTTCAC
AGGCGCAGTCACCCTTGGCGGACTCGCCGACAAAGTGGGTCGGAAAACCG
TGTTCTGCTGGTCGGCCCTGTTCCAATTGATCATCGGTGTGGGTGTGGCC
TTCATTCCCGAGTACTTCTCATTCATGGTGGCTCGCTACCTGCTGGGCAT
TGTGGGATCAGCGGGTGCCTACATCTGTGGGTTCGTGCTGACCATGGAAC
TGGTGGGACCTACCAAGCGTACTGTGTGCGGCATTACCTTCCAGGCTGTT
TTCGCTGGTGGCATCATGTTGGTGGCCGGATGGGGAGCACTCATCCCTGA
CCGCCAGTGGCTCCAAGTGATCTACGGACTGCATGGCTGTCTGTTCCTGG
GCCACTGGTGGTGGCTCGATGAATCTCCGCGCTGGCTGTGGATGCAGGGA
CGTGCCGCCGAGGCGGTGGATATTGTGGCCAAGGGCCTGAGAATCAACGG
ATCGGGCATCCCGGTGGACAAGGAGTACTATGTGCAGAAAGCCAAACAGC
AGGCGGCGGCCGAAGAAAAATCCAGCGCCGGATTGAGCGACCTCTTCCGC
ACGCCCAACTTGAGGATGAAGACTTTGAACGTGTGCCTCTGCTGGTTCGC
CAATTCTCTGGTTTATTACGGACTATCGCTCAGTGCCGGCAAGCTGTATG
GAAATCCCTACCTGATCCTGTTCATCATGGGCCTCGTGGAGTTCCCCAGC
TACATAACCATTGTGTTCGTCCTAGATCGCCTGGGTCGTCGATCGATCAC
CTCCACCCTGATGTTGGGTGGCGGTCTATGCTGCATTGTGGCCGCCTACA
TTGCCCAGGGCAGCACCACCTCCACGGCGGTGGTAATGGCAGGAAAGCTC
CTCATCGCCGGTTCCTTTGCCGTAATCTACAATTACTCAGCCGAACTGTT
TCCCACCGTGGTGCGGAACTCGGCCATGGGATTGGGATCGATGTGTGCCC
GTTTGTCGGGAGCCCTTACTCCGCTCATTACATTGCTGGACTCATTTGAT
CCGAAGATACCGGCCGTGCTGTTCGGCGTGGTGGCCCTGATCTCGGGCTT
CTGGGTTATGTTCCTGCCGGAGACAATGAACCAGCCCATGCCCGAGTCCA
TTGAGGATGGAGAGAACTTCGGAAAGGGAGATACTTGGTTCAGTCAGTGT
GCTGGTCGCAAAAAGCGCCAGAATAGCGTATATCCCGACGATCCGGAGCA
AATGGTGCCGCTCAAGAACATCGAGAGCAAGGCAAGCTTTCTAGACCAT
BO07828.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:06:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6126-RA | 1668 | CG6126-PA | 1..1665 | 17..1681 | 8325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6126-RA | 2126 | CG6126-RA | 249..1915 | 15..1681 | 8335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16198211..16199199 | 1681..693 | 4945 | 100 | Minus |
| 3R | 32079331 | 3R | 16199259..16199895 | 695..59 | 3185 | 100 | Minus |
| 3R | 32079331 | 3R | 16202785..16202835 | 65..15 | 240 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:06:42 has no hits.
BO07828.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:30 Download gff for
BO07828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6126-RA | 1..1668 | 17..1682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:43 Download gff for
BO07828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6126-RA | 241..1912 | 7..1681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:54 Download gff for
BO07828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6126-RA | 248..1912 | 17..1683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:30 Download gff for
BO07828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6126-RA | 241..1912 | 7..1681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:33 Download gff for
BO07828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6126-RA | 251..1915 | 17..1683 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:33 Download gff for
BO07828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16198209..16199197 | 695..1683 | 99 | <- | Minus |
| 3R | 16199260..16199894 | 60..694 | 100 | <- | Minus |
| 3R | 16202791..16202833 | 17..59 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:54 Download gff for
BO07828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12023931..12024919 | 695..1683 | 99 | <- | Minus |
| arm_3R | 12024982..12025616 | 60..694 | 100 | <- | Minus |
| arm_3R | 12028513..12028555 | 17..59 | 100 | | Minus |
BO07828.pep Sequence
Translation from 16 to 1699
> BO07828.pep
MAVDYVLEDLMGKLGEFGKYQFLQFFLQVLSGLTAGMHMLSLVTVAAVPE
HRCFIEGVDNSSLSVTPWNSSAILAAIPLKPNGELESCLMFDPSSPGTNT
TINCERYVYDTTYYKTSRTIDWNFVCDRRWMGAIVQTVFMLGVFTGAVTL
GGLADKVGRKTVFCWSALFQLIIGVGVAFIPEYFSFMVARYLLGIVGSAG
AYICGFVLTMELVGPTKRTVCGITFQAVFAGGIMLVAGWGALIPDRQWLQ
VIYGLHGCLFLGHWWWLDESPRWLWMQGRAAEAVDIVAKGLRINGSGIPV
DKEYYVQKAKQQAAAEEKSSAGLSDLFRTPNLRMKTLNVCLCWFANSLVY
YGLSLSAGKLYGNPYLILFIMGLVEFPSYITIVFVLDRLGRRSITSTLML
GGGLCCIVAAYIAQGSTTSTAVVMAGKLLIAGSFAVIYNYSAELFPTVVR
NSAMGLGSMCARLSGALTPLITLLDSFDPKIPAVLFGVVALISGFWVMFL
PETMNQPMPESIEDGENFGKGDTWFSQCAGRKKRQNSVYPDDPEQMVPLK
NIESKASFLDH
BO07828.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:35:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6126-PA | 555 | CG6126-PA | 1..555 | 1..555 | 2916 | 100 | Plus |
| Orct-PB | 548 | CG6331-PB | 4..523 | 8..520 | 907 | 39 | Plus |
| Orct-PA | 548 | CG6331-PA | 4..523 | 8..520 | 907 | 39 | Plus |
| Orct2-PB | 567 | CG13610-PB | 10..529 | 14..520 | 830 | 37.5 | Plus |
| Orct2-PA | 567 | CG13610-PA | 10..529 | 14..520 | 830 | 37.5 | Plus |
