Clone Sequence Records
BO07830.3prime Sequence
922 bp (863 high quality bases) assembled on 2006-01-06
> BO07830.3prime
ATGGTCTAGAAAGCTTGCCTAAAGGAAGTTAGTGGATGGTGCTTCGGGGC
GGCCACAGGCGCCGTAGTAGTTGACGTTCACCGTCTGGTTCGCCCTGCAG
TTTTCGATCTCCAGGAAGCAGTCGTTCAGATACGTTTTATTGTCGCTGCC
GCAAACAGGCTCGAATTCCCTGGGACAGATGCGGGCACATCCTTTAAGCT
GAAAGGCGGCAAGGCAGCGCTTCAGTGGCACCACGAAAACATGCTTGCCA
CAATTCTCCTTGCGCATGTGGCACTCGGACTTGTACAAGTTGTTGTCCGA
TCCGCAGACGAAACTTGGCGGCTGGGCATCACAATCCGATTCGCAGTCGG
CGGTTAAAGCGCAATTCTTTAGCGAAACGGGCACCACACGCAGATCGCAA
GTGCGCCGCTTGAACTCGCACATGGAGGCGAAGGTGTTGCCATCCGAGCC
GCACACTGGCTGCTGTTCCAGATCCGCCCGAGTACAGGCATCCCCGCAAT
CCTTGGTGGGCGAATTGAGATCCGTGCAGGGACCAATGTGGGCCAGATTC
ACGCCGCGTAGGCAGGTGGCGTGGGCCAGTTCGCACTCATTGTTATAAGT
CTTGGCGTCCGTGCCGCAGAGCTTGTCATTTCGCTTCGAGCTGAAGATGG
AACCGAACAAGCTATTGAAGTCCTTGCAAGGAGGCAGCTGTTTGCAGCGG
GTCAGTCGATTCTTGCACTTGTCCATGCTCACTTTTTGAATGGACTTGCG
CTGTGGACCGCAATTGAGCATTTTGAGTTCACACAGCGAAGAGTATATGT
TGCCATCACTGCCGCACACGTACTGCGACGAGGAATCCGTATCCGATTTG
GGACACTCCGTGGGACAGGCATCGGAGGCTCCGTGCCTCTCCTGCGACAT
GCAGTANGATAAGGGAACCTCA
BO07830.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32354-PA | 1989 | CG32354-RA | 1083..1985 | 922..20 | 4496 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:59:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32354-RA | 3251 | CG32354-RA | 2222..3124 | 922..20 | 4504 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:59:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8415984..8416523 | 20..559 | 2700 | 100 | Plus |
| 3L | 28110227 | 3L | 8416585..8416783 | 560..758 | 995 | 100 | Plus |
| 3L | 28110227 | 3L | 8416839..8417003 | 758..922 | 814 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:59:10 has no hits.
BO07830.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:19 Download gff for
BO07830.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32354-PA | 1084..1989 | 14..921 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:24 Download gff for
BO07830.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32354-PA | 1084..1989 | 14..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:23:33 Download gff for
BO07830.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32354-RA | 2223..3128 | 14..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:24:14 Download gff for
BO07830.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32354-RA | 2223..3128 | 14..921 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:24:14 Download gff for
BO07830.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8415980..8416523 | 14..559 | 99 | <- | Plus |
| 3L | 8416585..8416782 | 560..757 | 100 | <- | Plus |
| 3L | 8416839..8417002 | 758..921 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:23:33 Download gff for
BO07830.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8409080..8409623 | 14..559 | 99 | <- | Plus |
| arm_3L | 8409685..8409882 | 560..757 | 100 | <- | Plus |
| arm_3L | 8409939..8410102 | 758..921 | 99 | | Plus |
BO07830.5prime Sequence
870 bp (771 high quality bases) assembled on 2006-01-06
> BO07830.5prime
GAAGTTATCAGTCGACATGCACCACAAACAGCATCTGCATCTGCATCTGC
AGCCCCCCGCCCCAAACGCCACCCAAACACAGGCCCACGGACTTGGCCAG
ACTCCAAGCCAGATCGCCAGATGCAGCCATAACCACAGCCCCAGTCTGGG
CCTCAGCTTTGGCGGCACCAAGAGCCAGCGACAGCTGTTTGGCGCACTCT
TGGCCATGTTCACGTTGGCGGCATTTGCGTCAACCACCAGTGGCGCTGTG
ACAGACTCACCCATCAAGATTATCCGGCTGCCGGCGCAGGCGCCAGTTAT
CCGCTATCGCAGTGCAGATGCGGCGCCCAACTCATTGCTGATCAACTATC
GTCAGGATGCGCGACCGGAGCTGTCGTCCACATTGATGCAGGCACCCGGA
GCGGCGGCAGCTGCCTTGGAGTCGCTGCTGCGCGAGGAGACGGAGCAACA
GCAGCTGTCACAGATGGGCAGACGGAATAGGGCTAGTAACACCGGCACCG
GCAACTGTCCTCGATCCTGTCCACCGAGCATCACCGTGGGAGCTGAGCCC
GTGTGCGGCAGCGATGGTCTGATCTATGCGAATATCTGCGAGCTGCGCAA
GAAGACTTGCTCCCGCAGTGGAGTGTCGCTGATCAAGGACGTGCGGGATG
GCTGCGAGAGGTCGAAGGGTTCGGACTGCAAGCACCGCTGCAGCACGGAG
AAGGATCCAGTGTGTGGTACAGACGGAAGGACCTATCTGAATCGCTGCAT
GCTGAGGGTGCAATCGTGTCGCGTGGGATTGGCTGCAGTGAAGCTATCGC
ATGTGGGTCCCTGCAGCAACACGAGTGCCGTGCGTGAGTCCTGTCCGGTT
GACTGCAACAGTGCGCCGAA
BO07830.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32354-PA | 1989 | CG32354-RA | 1..854 | 17..870 | 4270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:30:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32354-RA | 3251 | CG32354-RA | 1140..1993 | 17..870 | 4270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:30:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8417232..8417860 | 870..242 | 3145 | 100 | Minus |
| 3L | 28110227 | 3L | 8420840..8421066 | 243..17 | 1135 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:30:06 has no hits.
BO07830.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:20 Download gff for
BO07830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32354-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:25 Download gff for
BO07830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32354-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:12:58 Download gff for
BO07830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32354-RA | 1132..1993 | 9..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:09:51 Download gff for
BO07830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32354-RA | 1132..1993 | 9..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:09:51 Download gff for
BO07830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8417232..8417859 | 243..870 | 100 | <- | Minus |
| 3L | 8420841..8421074 | 9..242 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:12:58 Download gff for
BO07830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8410332..8410959 | 243..870 | 100 | <- | Minus |
| arm_3L | 8413941..8414174 | 9..242 | 98 | | Minus |
BO07830.complete Sequence
2020 bp assembled on 2008-08-14
GenBank Submission: FJ630946
> BO07830.complete
GAAGTTATCAGTCGACATGCACCACAAACAGCATCTGCATCTGCATCTGC
AGCCCCCCGCCCCAAACGCCACCCAAACACAGGCCCACGGACTTGGCCAG
ACTCCAAGCCAGATCGCCAGATGCAGCCATAACCACAGCCCCAGTCTGGG
CCTCAGCTTTGGCGGCACCAAGAGCCAGCGACAGCTGTTTGGCGCACTCT
TGGCCATGTTCACGTTGGCGGCATTTGCGTCAACCACCAGTGGCGCTGTG
ACAGACTCACCCATCAAGATTATCCGGCTGCCGGCGCAGGCGCCAGTTAT
CCGCTATCGCAGTGCAGATGCGGCGCCCAACTCATTGCTGATCAACTATC
GTCAGGATGCGCGACCGGAGCTGTCGTCCACATTGATGCAGGCACCCGGA
GCGGCGGCAGCTGCCTTGGAGTCGCTGCTGCGCGAGGAGACGGAGCAACA
GCAGCTGTCACAGATGGGCAGACGGAATAGGGCTAGTAACACCGGCACCG
GCAACTGTCCTCGATCCTGTCCACCGAGCATCACCGTGGGAGCTGAGCCC
GTGTGCGGCAGCGATGGTCTGATCTATGCGAATATCTGCGAGCTGCGCAA
GAAGACTTGCTCCCGCAGTGGAGTGTCGCTGATCAAGGACGTGCGGGATG
GCTGCGAGAGGTCGAAGGGTTCGGACTGCAAGCACCGCTGCAGCACGGAG
AAGGATCCAGTGTGTGGTACAGACGGAAGGACCTATCTGAATCGCTGCAT
GCTGAGGGTGCAATCGTGTCGCGTGGGATTGGCTGCAGTGAAGCTATCGC
ATGTGGGTCCCTGCAGCAACACGAGTGCCGTGCGTGAGTCCTGTCCGGTT
GACTGCAACAGTGCGCCGAAGGATGGACCAGTTTGCTCATCGGATGGCAA
TGTATACAACTCCACGTGCGAGATGAAGCTGAAGACGTGTGGACAGGGTG
TGGTGAAAACCAGCCGGAAGCACTGTCAGTCCACACGAATGTGCAGGGAA
TCCTGCTGGCGTGTGGCGAGGCCCACTTGCGGATCAGATGGCAGACTGTA
TGCCAGTCCGTGCAAGATGCGCTCTTCCAATTGCGGCAAGCACGTCTTTG
AGGTTCCCTTATCCTACTGCATGTCGCAGGAGAGGCACGGAGCCTCCGAT
GCCTGTCCCACGGAGTGTCCCAAATCGGATACGGATTCCTCGTCGCAGTA
CGTGTGCGGCAGTGATGGCAACATATACTCTTCGCTGTGTGAACTCAAAA
TGCTCAATTGCGGTCCACAGCGCAAGTCCATTCAAAAAGTGAGCATGGAC
AAGTGCAAGAATCGACTGACCCGCTGCAAACAGCTGCCTCCTTGCAAGGA
CTTCAATAGCTTGTTCGGTTCCATCTTCAGCTCGAAGCGAAATGACAAGC
TCTGCGGCACGGACGCCAAGACTTATAACAATGAGTGCGAACTGGCCCAC
GCCACCTGCCTACGCGGCGTGAATCTGGCCCACATTGGTCCCTGCACGGA
TCTCAATTCGCCCACCAAGGATTGCGGGGATGCCTGTACTCGGGCGGATC
TGGAACAGCAGCCAGTGTGCGGCTCGGATGGCAACACCTTCGCCTCCATG
TGCGAGTTCAAGCGGCGCACTTGCGATCTGCGTGTGGTGCCCGTTTCGCT
AAAGAATTGCGCTTTAACCGCCGACTGCGAATCGGATTGTGATGCCCAGC
CGCCAAGTTTCGTCTGCGGATCGGACAACAACTTGTACAAGTCCGAGTGC
CACATGCGCAAGGAGAATTGTGGCAAGCATGTTTTCGTGGTGCCACTGAA
GCGCTGCCTTGCCGCCTTTCAGCTTAAAGGATGTGCCCGCATCTGTCCCA
GGGAATTCGAGCCTGTTTGCGGCAGCGACAATAAAACGTATCTGAACGAC
TGCTTCCTGGAGATCGAAAACTGCAGGGCGAACCAGACGGTGAACGTCAA
CTACTACGGCGCCTGTGGCCGCCCCGAAGCACCATCCACTAACTTCCTTT
ACGCAAGCTTTCTAGACCAT
BO07830.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:49:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32354-RA | 1989 | CG32354-PA | 1..1986 | 17..2002 | 9930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:49:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32354-RA | 3251 | CG32354-RA | 1140..3125 | 17..2002 | 9930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:49:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8416839..8417860 | 1263..242 | 5110 | 100 | Minus |
| 3L | 28110227 | 3L | 8415983..8416523 | 2002..1462 | 2705 | 100 | Minus |
| 3L | 28110227 | 3L | 8420840..8421066 | 243..17 | 1135 | 100 | Minus |
| 3L | 28110227 | 3L | 8416585..8416783 | 1461..1263 | 995 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:49:41 has no hits.
BO07830.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:06 Download gff for
BO07830.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32354-RA | 207..2200 | 9..2002 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:39:09 Download gff for
BO07830.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32354-RA | 1140..3125 | 17..2004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:39 Download gff for
BO07830.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32354-RA | 215..2200 | 17..2004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:11 Download gff for
BO07830.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32354-RA | 1140..3125 | 17..2004 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:11 Download gff for
BO07830.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8415981..8416523 | 1462..2004 | 99 | <- | Minus |
| 3L | 8416585..8416782 | 1264..1461 | 100 | <- | Minus |
| 3L | 8416839..8417859 | 243..1263 | 100 | <- | Minus |
| 3L | 8420841..8421066 | 17..242 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:39:09 Download gff for
BO07830.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8409081..8409623 | 1462..2004 | 99 | <- | Minus |
| arm_3L | 8409685..8409882 | 1264..1461 | 100 | <- | Minus |
| arm_3L | 8409939..8410959 | 243..1263 | 100 | <- | Minus |
| arm_3L | 8413941..8414166 | 17..242 | 100 | | Minus |
BO07830.pep Sequence
Translation from 16 to 2020
> BO07830.pep
MHHKQHLHLHLQPPAPNATQTQAHGLGQTPSQIARCSHNHSPSLGLSFGG
TKSQRQLFGALLAMFTLAAFASTTSGAVTDSPIKIIRLPAQAPVIRYRSA
DAAPNSLLINYRQDARPELSSTLMQAPGAAAAALESLLREETEQQQLSQM
GRRNRASNTGTGNCPRSCPPSITVGAEPVCGSDGLIYANICELRKKTCSR
SGVSLIKDVRDGCERSKGSDCKHRCSTEKDPVCGTDGRTYLNRCMLRVQS
CRVGLAAVKLSHVGPCSNTSAVRESCPVDCNSAPKDGPVCSSDGNVYNST
CEMKLKTCGQGVVKTSRKHCQSTRMCRESCWRVARPTCGSDGRLYASPCK
MRSSNCGKHVFEVPLSYCMSQERHGASDACPTECPKSDTDSSSQYVCGSD
GNIYSSLCELKMLNCGPQRKSIQKVSMDKCKNRLTRCKQLPPCKDFNSLF
GSIFSSKRNDKLCGTDAKTYNNECELAHATCLRGVNLAHIGPCTDLNSPT
KDCGDACTRADLEQQPVCGSDGNTFASMCEFKRRTCDLRVVPVSLKNCAL
TADCESDCDAQPPSFVCGSDNNLYKSECHMRKENCGKHVFVVPLKRCLAA
FQLKGCARICPREFEPVCGSDNKTYLNDCFLEIENCRANQTVNVNYYGAC
GRPEAPSTNFLYASFLDH
BO07830.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32354-PA | 662 | CG32354-PA | 1..662 | 1..662 | 3607 | 100 | Plus |
