Clone Sequence Records
BO07832.3prime Sequence
912 bp (801 high quality bases) assembled on 2006-01-06
> BO07832.3prime
ATGGTCTAGAAAGCTTGCTTTGACTTTGCGCTGGTGCAGACTAGAACTAC
TGCTGTCCGGGTTGAAGATGGCATCGTTGTTGGATAACACGCCCTCCTTG
AAGAAGCCCTCCTTGTAGGCACCATTCGATTGCCCCTTGCTTTTGACGTA
CTCGTCCTCCATCACCGGCATGCAAGCCCCAGTATTGCAACCGTTTGCAA
TCAGGGCGTCACCCTCTCCAAGATGCTTGCTGTGCCCATTCGAAGCCGAG
CCGTTGGCATAGCCATTGGCCTTGACCGCCTGCCGGCGACGTCGAGCTGC
GTTGAGATATTTCGCTTTGTAAAAGTCGGAGAACAGGAACAGGAACATAA
CGCCGTGCAATCCGATCCAGACCATGAAGCCCTTGGGGTAATCACATTCG
CGGAACAAAAGCTGGAACTGGTGGGTGAAAATGGCCACGAATTGAACCAT
TTGGAAGGTGGTCAGGTACTTCTTCCACCAGATGTACTTCTGGTACTTTG
GACCCATGGCGGCGATCATGTAGTAGAAATACATTACAATGTGCACAAAC
GAGTTGAGAAGGGCAAAGAAAGTGCTATGACCGCCTGGCGCAAACTTCAG
ACCCATCCAGACGGAGAACGGCATGCAGCCGTGATGGATGACGTGTAGTG
TGGAGACGTGCTCGTTCTTTTTTCGCAGAATGAAGAAGAGTGTGTCGAAG
AACTCGGTGAACTTAGATATGTAGTACCACCAGCAAATGTTGACCATCCG
CATGGCCAAGCCAGTGGTGCTATAGTCAACGGGCTGACACTTTAAGCTGT
AGTGGCCCCACCATCCGCTCATTAAGTACTCATAAAAGATCCACGCGCTA
AATATTGTTTGTATCGCGTTGTATACAACTAAAACAGATCGCAACTCCCT
CGGGTTTCGTTT
BO07832.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31523-PC | 1065 | CG31523-RC | 183..1062 | 898..19 | 4400 | 100 | Minus |
CG31523-PB | 1065 | CG31523-RB | 183..1062 | 898..19 | 4400 | 100 | Minus |
CG31523-PA | 1065 | CG31523-RA | 183..1062 | 898..19 | 4400 | 100 | Minus |
CG31523-PD | 1065 | CG31523-RD | 183..1062 | 898..19 | 4400 | 100 | Minus |
CG31522-PA | 1095 | CG31522-RA | 552..620 | 526..458 | 195 | 91.3 | Minus |
CG31522-PD | 1098 | CG31522-RD | 555..623 | 526..458 | 195 | 91.3 | Minus |
CG31522-PB | 1098 | CG31522-RB | 555..623 | 526..458 | 195 | 91.3 | Minus |
CG31522-PA | 1095 | CG31522-RA | 425..458 | 653..620 | 145 | 97 | Minus |
CG31522-PD | 1098 | CG31522-RD | 428..461 | 653..620 | 145 | 97 | Minus |
CG31522-PB | 1098 | CG31522-RB | 428..461 | 653..620 | 145 | 97 | Minus |
CG2781-PA | 990 | CG2781-RA | 343..386 | 735..692 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:22:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31523-RF | 2585 | CG31523-RF | 419..1312 | 912..19 | 4425 | 99.7 | Minus |
CG31523-RE | 3232 | CG31523-RE | 1066..1959 | 912..19 | 4425 | 99.7 | Minus |
CG31523-RG | 2576 | CG31523-RG | 410..1303 | 912..19 | 4425 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:22:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4467294..4467573 | 169..448 | 1400 | 100 | Plus |
3R | 32079331 | 3R | 4467843..4468007 | 584..748 | 825 | 100 | Plus |
3R | 32079331 | 3R | 4466694..4466844 | 19..169 | 755 | 100 | Plus |
3R | 32079331 | 3R | 4467630..4467771 | 446..587 | 710 | 100 | Plus |
3R | 32079331 | 3R | 4468066..4468148 | 748..830 | 415 | 100 | Plus |
3R | 32079331 | 3R | 7982860..7983134 | 461..735 | 415 | 76.7 | Plus |
3R | 32079331 | 3R | 4468214..4468297 | 829..912 | 375 | 96.4 | Plus |
3R | 32079331 | 3R | 4444122..4444251 | 458..587 | 335 | 83.8 | Plus |
3R | 32079331 | 3R | 22555672..22555780 | 560..452 | 290 | 84.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:22:11 has no hits.
BO07832.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:21 Download gff for
BO07832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31523-PA | 169..1065 | 15..912 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:26 Download gff for
BO07832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31523-PB | 169..1065 | 15..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:49:26 Download gff for
BO07832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31523-RD | 278..1179 | 8..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:07:22 Download gff for
BO07832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31523-RG | 410..1311 | 8..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:07:22 Download gff for
BO07832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4467844..4468006 | 585..747 | 100 | <- | Plus |
3R | 4468066..4468146 | 748..828 | 100 | <- | Plus |
3R | 4468214..4468297 | 829..912 | 96 | | Plus |
3R | 4466686..4466843 | 8..168 | 96 | <- | Plus |
3R | 4467294..4467572 | 169..447 | 100 | <- | Plus |
3R | 4467632..4467768 | 448..584 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:49:26 Download gff for
BO07832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 292408..292565 | 8..168 | 96 | <- | Plus |
arm_3R | 293016..293294 | 169..447 | 100 | <- | Plus |
arm_3R | 293354..293490 | 448..584 | 100 | <- | Plus |
arm_3R | 293566..293728 | 585..747 | 100 | <- | Plus |
arm_3R | 293788..293868 | 748..828 | 100 | <- | Plus |
arm_3R | 293936..294019 | 829..912 | 96 | | Plus |
BO07832.5prime Sequence
841 bp (825 high quality bases) assembled on 2006-01-06
> BO07832.5prime
GAAGTTATCAGTCGACATGGCAATCATACTGCAAGAAGCCCAGAAGTGGT
ATCGGGACCTAATGGACAATAAAAGCGATCCTCGCGTTAACGACTTCTTT
CTGCTATCCTCGCCACTGCCCACACTTTGTATGTGCATATTCTATGCCTA
CTTCAGCAAATCCCTGGGGCCCAGGCTGATGGCCAAACGGAAACCGATGG
AGTTGCGATCTGTTTTAGTTGTATACAACGCGATACAAACAATATTTAGC
GCGTGGATCTTTTATGAGTACTTAATGAGCGGATGGTGGGGCCACTACAG
CTTAAAGTGTCAGCCCGTTGACTATAGCACCACTGGCTTGGCCATGCGGA
TGGTCAACATTTGCTGGTGGTACTACATATCTAAGTTCACCGAGTTCTTC
GACACACTCTTCTTCATTCTGCGAAAAAAGAACGAGCACGTCTCCACACT
ACACGTCATCCATCACGGCTGCATGCCGTTCTCCGTCTGGATGGGTCTGA
AGTTTGCGCCAGGCGGTCATAGCACTTTCTTTGCCCTTCTCAACTCGTTT
GTGCACATTGTAATGTATTTCTACTACATGATCGCCGCCATGGGTCCAAA
GTACCAGAAGTACATCTGGTGGAAGAAGTACCTGACCACCTTCCAAATGG
TTCAATTCGTGGCCATTTTCACCCACCAGTTCCAGCTTTTGTTCCGCGAA
TGTGATTACCCCAAGGGCTTCATGGTCTGGATCGGATTGCACGGCGTTAT
GTTCCTGTTCCTGTTCTCCGACTTTTACAAAGCGAAATATCTCAACGCAG
CTCGACGTCGCCGGCAGGCGGTCAAGGCCAATGGCTATGCC
BO07832.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31523-PC | 1065 | CG31523-RC | 1..825 | 17..841 | 4125 | 100 | Plus |
CG31523-PB | 1065 | CG31523-RB | 1..825 | 17..841 | 4125 | 100 | Plus |
CG31523-PA | 1065 | CG31523-RA | 1..825 | 17..841 | 4125 | 100 | Plus |
CG31523-PD | 1065 | CG31523-RD | 1..825 | 17..841 | 4125 | 100 | Plus |
CG31522-PA | 1095 | CG31522-RA | 552..620 | 571..639 | 195 | 91.3 | Plus |
CG31522-PD | 1098 | CG31522-RD | 555..623 | 571..639 | 195 | 91.3 | Plus |
CG31522-PB | 1098 | CG31522-RB | 555..623 | 571..639 | 195 | 91.3 | Plus |
CG31522-PA | 1095 | CG31522-RA | 425..458 | 444..477 | 145 | 97 | Plus |
CG31522-PD | 1098 | CG31522-RD | 428..461 | 444..477 | 145 | 97 | Plus |
CG31522-PB | 1098 | CG31522-RB | 428..461 | 444..477 | 145 | 97 | Plus |
CG2781-PA | 990 | CG2781-RA | 343..386 | 362..405 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:02:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31523-RF | 2585 | CG31523-RF | 251..1075 | 17..841 | 4125 | 100 | Plus |
CG31523-RE | 3232 | CG31523-RE | 898..1722 | 17..841 | 4125 | 100 | Plus |
CG31523-RG | 2576 | CG31523-RG | 242..1066 | 17..841 | 4125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:02:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4467381..4467573 | 841..649 | 965 | 100 | Minus |
3R | 32079331 | 3R | 4468214..4468405 | 268..77 | 960 | 100 | Minus |
3R | 32079331 | 3R | 4467843..4468007 | 513..349 | 825 | 100 | Minus |
3R | 32079331 | 3R | 4467630..4467771 | 651..510 | 710 | 100 | Minus |
3R | 32079331 | 3R | 4468066..4468148 | 349..267 | 415 | 100 | Minus |
3R | 32079331 | 3R | 7982860..7983134 | 636..362 | 415 | 76.7 | Minus |
3R | 32079331 | 3R | 4444122..4444251 | 639..510 | 335 | 83.8 | Minus |
3R | 32079331 | 3R | 4468464..4468524 | 77..17 | 305 | 100 | Minus |
3R | 32079331 | 3R | 22555672..22555780 | 537..645 | 290 | 84.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:02:51 has no hits.
BO07832.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:23 Download gff for
BO07832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31523-PA | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:28 Download gff for
BO07832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31523-PB | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:46:35 Download gff for
BO07832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31523-RD | 103..934 | 9..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:53:08 Download gff for
BO07832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31523-RG | 235..1066 | 9..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:53:08 Download gff for
BO07832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4467381..4467572 | 650..841 | 100 | <- | Minus |
3R | 4467632..4467768 | 513..649 | 100 | <- | Minus |
3R | 4467844..4468006 | 350..512 | 100 | <- | Minus |
3R | 4468066..4468146 | 269..349 | 100 | <- | Minus |
3R | 4468214..4468404 | 78..268 | 100 | <- | Minus |
3R | 4468464..4468531 | 9..77 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:46:35 Download gff for
BO07832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 293103..293294 | 650..841 | 100 | <- | Minus |
arm_3R | 293354..293490 | 513..649 | 100 | <- | Minus |
arm_3R | 293566..293728 | 350..512 | 100 | <- | Minus |
arm_3R | 293788..293868 | 269..349 | 100 | <- | Minus |
arm_3R | 293936..294126 | 78..268 | 100 | <- | Minus |
arm_3R | 294186..294253 | 9..77 | 94 | | Minus |
BO07832.complete Sequence
1096 bp (1096 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630947
> BO07832.complete
GAAGTTATCAGTCGACATGGCAATCATACTGCAAGAAGCCCAGAAGTGGT
ATCGGGACCTAATGGACAATAAAAGCGATCCTCGCGTTAACGACTTCTTT
CTGCTATCCTCGCCACTGCCCACACTTTGTATGTGCATATTCTATGCCTA
CTTCAGCAAATCCCTGGGGCCCAGGCTGATGGCCAAACGGAAACCGATGG
AGTTGCGATCTGTTTTAGTTGTATACAACGCGATACAAACAATATTTAGC
GCGTGGATCTTTTATGAGTACTTAATGAGCGGATGGTGGGGCCACTACAG
CTTAAAGTGTCAGCCCGTTGACTATAGCACCACTGGCTTGGCCATGCGGA
TGGTCAACATTTGCTGGTGGTACTACATATCTAAGTTCACCGAGTTCTTC
GACACACTCTTCTTCATTCTGCGAAAAAAGAACGAGCACGTCTCCACACT
ACACGTCATCCATCACGGCTGCATGCCGTTCTCCGTCTGGATGGGTCTGA
AGTTTGCGCCAGGCGGTCATAGCACTTTCTTTGCCCTTCTCAACTCGTTT
GTGCACATTGTAATGTATTTCTACTACATGATCGCCGCCATGGGTCCAAA
GTACCAGAAGTACATCTGGTGGAAGAAGTACCTGACCACCTTCCAAATGG
TTCAATTCGTGGCCATTTTCACCCACCAGTTCCAGCTTTTGTTCCGCGAA
TGTGATTACCCCAAGGGCTTCATGGTCTGGATCGGATTGCACGGCGTTAT
GTTCCTGTTCCTGTTCTCCGACTTTTACAAAGCGAAATATCTCAACGCAG
CTCGACGTCGCCGGCAGGCGGTCAAGGCCAATGGCTATGCCAACGGCTCG
GCTTCGAATGGGCACAGCAAGCATCTTGGAGAGGGTGACGCCCTGATTGC
AAACGGTTGCAATACTGGGGCTTGCATGCCGGTGATGGAGGACGAGTACG
TCAAAAGCAAGGGGCAATCGAATGGTGCCTACAAGGAGGGCTTCTTCAAG
GAGGGCGTGTTATCCAACAACGATGCCATCTTCAACCCGGACAGCAGTAG
TTCTAGTCTGCACCAGCGCAAAGTCAAAGCAAGCTTTCTAGACCAT
BO07832.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:33:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31523-RF | 1065 | CG31523-PF | 1..1062 | 17..1078 | 5310 | 100 | Plus |
CG31523-RE | 1065 | CG31523-PE | 1..1062 | 17..1078 | 5310 | 100 | Plus |
CG31523-RG | 1065 | CG31523-PG | 1..1062 | 17..1078 | 5310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:33:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31523-RF | 2585 | CG31523-RF | 251..1312 | 17..1078 | 5310 | 100 | Plus |
CG31523-RE | 3232 | CG31523-RE | 898..1959 | 17..1078 | 5310 | 100 | Plus |
CG31523-RG | 2576 | CG31523-RG | 242..1303 | 17..1078 | 5310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:33:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4467294..4467573 | 928..649 | 1400 | 100 | Minus |
3R | 32079331 | 3R | 4468214..4468405 | 268..77 | 960 | 100 | Minus |
3R | 32079331 | 3R | 4467843..4468007 | 513..349 | 825 | 100 | Minus |
3R | 32079331 | 3R | 4466694..4466844 | 1078..928 | 755 | 100 | Minus |
3R | 32079331 | 3R | 4467630..4467771 | 651..510 | 710 | 100 | Minus |
3R | 32079331 | 3R | 4468066..4468148 | 349..267 | 415 | 100 | Minus |
3R | 32079331 | 3R | 7982860..7983134 | 636..362 | 415 | 76.7 | Minus |
3R | 32079331 | 3R | 4444122..4444251 | 639..510 | 335 | 83.8 | Minus |
3R | 32079331 | 3R | 4468464..4468524 | 77..17 | 305 | 100 | Minus |
3R | 32079331 | 3R | 22555672..22555780 | 537..645 | 290 | 84.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:33:50 has no hits.
BO07832.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:24 Download gff for
BO07832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31523-RA | 1..1065 | 17..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:00 Download gff for
BO07832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31523-RA | 555..1631 | 9..1089 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:56 Download gff for
BO07832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31523-RD | 110..1171 | 17..1080 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:25 Download gff for
BO07832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31523-RA | 555..1631 | 9..1089 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:21 Download gff for
BO07832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31523-RG | 242..1303 | 17..1080 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:21 Download gff for
BO07832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4466692..4466843 | 929..1080 | 98 | <- | Minus |
3R | 4467844..4468006 | 350..512 | 100 | <- | Minus |
3R | 4468066..4468146 | 269..349 | 100 | <- | Minus |
3R | 4468214..4468404 | 78..268 | 100 | <- | Minus |
3R | 4468464..4468524 | 17..77 | 100 | | Minus |
3R | 4467294..4467572 | 650..928 | 100 | <- | Minus |
3R | 4467632..4467768 | 513..649 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:56 Download gff for
BO07832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 292414..292565 | 929..1080 | 98 | <- | Minus |
arm_3R | 293016..293294 | 650..928 | 100 | <- | Minus |
arm_3R | 293354..293490 | 513..649 | 100 | <- | Minus |
arm_3R | 293566..293728 | 350..512 | 100 | <- | Minus |
arm_3R | 293788..293868 | 269..349 | 100 | <- | Minus |
arm_3R | 293936..294126 | 78..268 | 100 | <- | Minus |
arm_3R | 294186..294246 | 17..77 | 100 | | Minus |
BO07832.pep Sequence
Translation from 16 to 1096
> BO07832.pep
MAIILQEAQKWYRDLMDNKSDPRVNDFFLLSSPLPTLCMCIFYAYFSKSL
GPRLMAKRKPMELRSVLVVYNAIQTIFSAWIFYEYLMSGWWGHYSLKCQP
VDYSTTGLAMRMVNICWWYYISKFTEFFDTLFFILRKKNEHVSTLHVIHH
GCMPFSVWMGLKFAPGGHSTFFALLNSFVHIVMYFYYMIAAMGPKYQKYI
WWKKYLTTFQMVQFVAIFTHQFQLLFRECDYPKGFMVWIGLHGVMFLFLF
SDFYKAKYLNAARRRRQAVKANGYANGSASNGHSKHLGEGDALIANGCNT
GACMPVMEDEYVKSKGQSNGAYKEGFFKEGVLSNNDAIFNPDSSSSSLHQ
RKVKASFLDH
BO07832.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31523-PF | 354 | CG31523-PF | 1..354 | 1..354 | 1929 | 100 | Plus |
CG31523-PE | 354 | CG31523-PE | 1..354 | 1..354 | 1929 | 100 | Plus |
CG31523-PG | 354 | CG31523-PG | 1..354 | 1..354 | 1929 | 100 | Plus |
CG31523-PD | 354 | CG31523-PD | 1..354 | 1..354 | 1929 | 100 | Plus |
CG31523-PA | 354 | CG31523-PA | 1..354 | 1..354 | 1929 | 100 | Plus |