Clone Sequence Records
BO07833.3prime Sequence
931 bp (787 high quality bases) assembled on 2006-01-06
> BO07833.3prime
ATGGTCTAGAAAGCTTGCCTCTGGTCCCTCCAAAAGCCAGTAGGTCTCCA
TCTCGCCCTTGCCCTTGACCTTGACAAATCCCCGCGCTTCAACCTTATAG
CCCACCTTTTGCACCTTCAGCGCAGTATAGTTGGACAGCTGGATCATCCA
GGGATCGCTGCTGCTCTCCATTCGCGAGGCGGTGTTAACGGTGTCTCCAA
AGAGACAGTATCGAGGAACCTTCATCCCAACCACGCCGGCGACGACGGGT
CCCGAGTTAATGCCCACCCGTATAGCCACCCCGGGAAGAGCATGGGCTTT
GACCTTCTTCATCACCCTTAAGGCCAAATCGCAGGCGTGTTCGGCATGCA
GGGGATTCACATCAGGAGCACCCGAAACAGCCATGTAAACCATGCCCACG
GTCTCCACTTTGTAAACAAACGGGGAAATGATCTCTTCGTCCAATGCCGA
AAACACTTTGTTTAAGGTGGTCACCGCCTGCATGGCATCCTGGATGTTGT
TGGACCCACTGTCATAGATATTCATTACCTCGATGAAAATGACGGATACC
TCCTCGAAACTCTGACACACGTGCTCCTCGCTCTTTCTCATTCGCTCGGC
AATGGGTCGCGGTATCATGGAATACAGTAGCTCATCTCCCTGCCGCTTCC
AGGAATCTGCCAGTTCCAGCGACTTTTCCAGCTCATCCGATCGCTGCTCC
TCCTTCTCAAACATTATCTCCAGCTTGGAGCAGTGCTGCCATCCCGCCAT
CACAAGCTCTCTACTCAGTCCATGCGGATTAAGATCGTTCAAATAGAGAC
CGATTCCATGCAGCTCATCGAGATTTTCGATTAGAGGACTGCACAGGAAG
ATCAGCGAGTCCACATCTTTGATATAGAACATTTGTCCCTTCAACAGGAT
AGATCGGAGGCCCACCGAATGGCGTCTCTGT
BO07833.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14886-PA | 2010 | Gyc-89Db-RA | 1095..2007 | 931..19 | 4565 | 100 | Minus |
CG14885-PB | 2004 | Gyc-89Da-RB | 1117..1421 | 900..596 | 1175 | 95.4 | Minus |
CG14885-PC | 2004 | Gyc-89Da-RC | 1117..1421 | 900..596 | 1175 | 95.4 | Minus |
CG14885-PB | 2004 | Gyc-89Da-RB | 1582..1709 | 435..308 | 565 | 97.6 | Minus |
CG14885-PC | 2004 | Gyc-89Da-RC | 1582..1709 | 435..308 | 565 | 97.6 | Minus |
CG14885-PB | 2004 | Gyc-89Da-RB | 1795..1880 | 222..137 | 330 | 95.3 | Minus |
CG14885-PC | 2004 | Gyc-89Da-RC | 1795..1880 | 222..137 | 330 | 95.3 | Minus |
CG14885-PB | 2004 | Gyc-89Da-RB | 1946..1982 | 71..35 | 135 | 94.5 | Minus |
CG14885-PC | 2004 | Gyc-89Da-RC | 1946..1982 | 71..35 | 135 | 94.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:45:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gyc-89Db-RA | 2784 | CG14886-RA | 1635..2547 | 931..19 | 4565 | 100 | Minus |
Gyc-89Da-RC | 2339 | CG14885-RC | 1348..2230 | 900..18 | 2615 | 86.5 | Minus |
Gyc-89Da-RB | 2274 | CG14885-RB | 1283..2165 | 900..18 | 2615 | 86.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:45:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16479921..16480833 | 931..19 | 4565 | 100 | Minus |
3R | 32079331 | 3R | 16474486..16475368 | 900..18 | 2600 | 86.3 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:45:30 has no hits.
BO07833.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:24 Download gff for
BO07833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14886-PA | 1095..2010 | 18..931 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:29 Download gff for
BO07833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14886-PA | 1095..2010 | 18..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:10:53 Download gff for
BO07833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gyc-89Db-RA | 1635..2547 | 19..931 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:21:31 Download gff for
BO07833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gyc-89Db-RA | 1635..2547 | 19..931 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:21:31 Download gff for
BO07833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16479921..16480833 | 19..931 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:10:53 Download gff for
BO07833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12305643..12306555 | 19..931 | 100 | | Minus |
BO07833.5prime Sequence
938 bp (809 high quality bases) assembled on 2006-01-06
> BO07833.5prime
GAAGTTATCAGTCGACATGTACGGAATGCTGTACGAGAGCGTGCAGCACT
ATATCCAGCAGGAGTATGGCATGGAGACCTGGCGAAAGGTCTGCCAGATT
GTCGACTGCAAGCATCAGAGCTTCAAGACACATCAGATCTATCCGGACAA
GCTGATGCCGGACTTTGCGGCAGCCCTGTCCGCCAGCACGGGCGAGTCCT
TCGACTTCTGCATGAACTTCTTCGGGCGCTGTTTTGTGCGATTCTTCAGC
AACTTCGGCTACGACAAGATGATCCGCTCCACAGGGCGATACTTCTGCGA
CTTCCTGCAGTCCATCGACAACATTCACGTGCAGATGCGTTTCACCTATC
CCAAGATGAAGTCGCCCAGCATGCAGTTGACCAACATGGATGACGATGGG
GCTGTGATCCTGTACCGCAGCGGCCGAACTGGCATGTCCAAGTACCTGAT
TGGCCAGATGACCGAGGTGGCCAAGGAGTTCTACGGCCTAGACATGACTG
CCTATGTCCTGGAGAGCCAAAATGACATATGCGGTGGCACAGCCGGTCCC
ATCAAGCTTACGGAGGGTCCTCTGACCGTGATTGTCAAGTATCGGCTGGA
CTTCGATAATCGCGATTATATGGCCAAGCGGGTCAATGTCATCGCGCATC
CTTCGCAGCTGAAGATGCCGTCGGTGGACCTGAATGTGTTCCTCGAGCTG
TTTCCCTTCACCATTGTGCTGGATCACGACATGAAAATCACACTTGCGGG
CGAGAAGATTGTCGAGACGTGGATTCTGCATAATCCTGGAGTGAACCCAA
AGACCTTTATTGGCAGTCACATATTGGAGCGGTTCAAGTGCCGTCGTCCC
AAGGACACTCAGATCCAATGGGAGACCATCTGCAAATGCGTACAGTTCTC
TTCGAGTTTGAGCTCATCCGTACGGNTCACAATCGTGC
BO07833.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14886-PA | 2010 | Gyc-89Db-RA | 1..863 | 17..879 | 4315 | 100 | Plus |
CG14885-PB | 2004 | Gyc-89Da-RB | 161..312 | 177..328 | 710 | 98.6 | Plus |
CG14885-PC | 2004 | Gyc-89Da-RC | 161..312 | 177..328 | 710 | 98.6 | Plus |
CG14886-PA | 2010 | Gyc-89Db-RA | 864..923 | 879..938 | 281 | 98.3 | Plus |
CG14885-PB | 2004 | Gyc-89Da-RB | 319..377 | 335..393 | 270 | 98.3 | Plus |
CG14885-PC | 2004 | Gyc-89Da-RC | 319..377 | 335..393 | 270 | 98.3 | Plus |
CG14885-PB | 2004 | Gyc-89Da-RB | 103..146 | 119..162 | 170 | 95.4 | Plus |
CG14885-PC | 2004 | Gyc-89Da-RC | 103..146 | 119..162 | 170 | 95.4 | Plus |
CG14885-PB | 2004 | Gyc-89Da-RB | 529..621 | 545..637 | 165 | 87 | Plus |
CG14885-PC | 2004 | Gyc-89Da-RC | 529..621 | 545..637 | 165 | 87 | Plus |
CG14885-PB | 2004 | Gyc-89Da-RB | 412..456 | 428..472 | 150 | 93.3 | Plus |
CG14885-PC | 2004 | Gyc-89Da-RC | 412..456 | 428..472 | 150 | 93.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:31:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gyc-89Db-RA | 2784 | CG14886-RA | 540..1463 | 16..938 | 4584 | 99.8 | Plus |
Gyc-89Da-RC | 2339 | CG14885-RC | 231..1151 | 16..935 | 2229 | 83 | Plus |
Gyc-89Da-RB | 2274 | CG14885-RB | 166..1086 | 16..935 | 2229 | 83 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:31:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16478826..16479749 | 16..938 | 4559 | 99.8 | Plus |
3R | 32079331 | 3R | 16473369..16474211 | 16..858 | 2205 | 84.1 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:31:47 has no hits.
BO07833.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:25 Download gff for
BO07833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14886-PA | 1..923 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:30 Download gff for
BO07833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14886-PA | 1..923 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:26:30 Download gff for
BO07833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gyc-89Db-RA | 537..1463 | 9..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:51:03 Download gff for
BO07833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gyc-89Db-RA | 537..1463 | 9..938 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:51:03 Download gff for
BO07833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16478823..16479749 | 9..938 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:26:30 Download gff for
BO07833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12304545..12305471 | 9..938 | 99 | | Plus |
BO07833.complete Sequence
2041 bp (2041 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630948
> BO07833.complete
GAAGTTATCAGTCGACATGTACGGAATGCTGTACGAGAGCGTGCAGCACT
ATATCCAGCAGGAGTATGGCATGGAGACCTGGCGAAAGGTCTGCCAGATT
GTCGACTGCAAGCATCAGAGCTTCAAGACACATCAGATCTATCCGGACAA
GCTGATGCCGGACTTTGCGGCAGCCCTGTCCGCCAGCACGGGCGAGTCCT
TCGACTTCTGCATGAACTTCTTCGGGCGCTGTTTTGTGCGATTCTTCAGC
AACTTCGGCTACGACAAGATGATCCGCTCCACAGGGCGATACTTCTGCGA
CTTCCTGCAGTCCATCGACAACATTCACGTGCAGATGCGTTTCACCTATC
CCAAGATGAAGTCGCCCAGCATGCAGTTGACCAACATGGATGACGATGGG
GCTGTGATCCTGTACCGCAGCGGCCGAACTGGCATGTCCAAGTACCTGAT
TGGCCAGATGACCGAGGTGGCCAAGGAGTTCTACGGCCTAGACATGACTG
CCTATGTCCTGGAGAGCCAAAATGACATATGCGGTGGCACAGCCGGTCCC
ATCAAGCTTACGGAGGGTCCTCTGACCGTGATTGTCAAGTATCGGCTGGA
CTTCGATAATCGCGATTATATGGCCAAGCGGGTCAATGTCATCGCGCATC
CTTCGCAGCTGAAGATGCCGTCGGTGGACCTGAATGTGTTCCTCGAGCTG
TTTCCCTTCACCATTGTGCTGGATCACGACATGAAAATCACACTTGCGGG
CGAGAAGATTGTCGAGACGTGGATTCTGCATAATCCTGGAGTGAACCCAA
AGACCTTTATTGGCAGTCACATATTGGAGCGGTTCAAGTGCCGTCGTCCC
AAGGACACTCAGATCCAATGGGAGACCATTCTGCAAATGCGTACAGTTCT
CTTCGAGTTTGAGCTCATCCGTACGGGTCACAATCGTGCCGCCTATGATG
CGGCCTTGAACTTTGACTTTGAAAACTTTGATGAAGCCAGCAGCCTGAAC
GAGGCGCAGGCCATGGCTTTGGCCAGTGCCAAGGAGTTTAGTGCGGAGAA
CGCCAAGGAAGAGGCAGCAGCGGCAGCCACCTCCAAGGACGAAATCGATC
CCGCCACGGGACAGAGACGCCATTCGGTGGGCCTCCGATCTATCCTGTTG
AAGGGACAAATGTTCTATATCAAAGATGTGGACTCGCTGATCTTCCTGTG
CAGTCCTCTAATCGAAAATCTCGATGAGCTGCATGGAATCGGTCTCTATT
TGAACGATCTTAATCCGCATGGACTGAGTAGAGAGCTTGTGATGGCGGGA
TGGCAGCACTGCTCCAAGCTGGAGATAATGTTTGAGAAGGAGGAGCAGCG
ATCGGATGAGCTGGAAAAGTCGCTGGAACTGGCAGATTCCTGGAAGCGGC
AGGGAGATGAGCTACTGTATTCCATGATACCGCGACCCATTGCCGAGCGA
ATGAGAAAGAGCGAGGAGCACGTGTGTCAGAGTTTCGAGGAGGTATCCGT
CATTTTCATCGAGGTAATGAATATCTATGACAGTGGGTCCAACAACATCC
AGGATGCCATGCAGGCGGTGACCACCTTAAACAAAGTGTTTTCGGCATTG
GACGAAGAGATCATTTCCCCGTTTGTTTACAAAGTGGAGACCGTGGGCAT
GGTTTACATGGCTGTTTCGGGTGCTCCTGATGTGAATCCCCTGCATGCCG
AACACGCCTGCGATTTGGCCTTAAGGGTGATGAAGAAGGTCAAAGCCCAT
GCTCTTCCCGGGGTGGCTATACGGGTGGGCATTAACTCGGGACCCGTCGT
CGCCGGCGTGGTTGGGATGAAGGTTCCTCGATACTGTCTCTTTGGAGACA
CCGTTAACACCGCCTCGCGAATGGAGAGCAGCAGCGATCCCTGGATGATC
CAGCTGTCCAACTATACTGCGCTGAAGGTGCAAAAGGTGGGCTATAAGGT
TGAAGCGCGGGGATTTGTCAAGGTCAAGGGCAAGGGCGAGATGGAGACCT
ACTGGCTTTTGGAGGGACCAGAGGCAAGCTTTCTAGACCAT
BO07833.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:35:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gyc-89Db-RA | 2010 | CG14886-PA | 1..2007 | 17..2023 | 10035 | 100 | Plus |
Gyc-89Da-RC | 2004 | CG14885-PC | 1117..1999 | 1142..2024 | 2600 | 86.3 | Plus |
Gyc-89Da-RB | 2004 | CG14885-PB | 1117..1999 | 1142..2024 | 2600 | 86.3 | Plus |
Gyc-89Da-RC | 2004 | CG14885-PC | 1..965 | 17..981 | 2320 | 82.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:35:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gyc-89Db-RA | 2784 | CG14886-RA | 540..2547 | 16..2023 | 10040 | 100 | Plus |
Gyc-89Da-RC | 2339 | CG14885-RC | 1348..2230 | 1142..2024 | 2600 | 86.3 | Plus |
Gyc-89Da-RB | 2274 | CG14885-RB | 1283..2165 | 1142..2024 | 2600 | 86.3 | Plus |
Gyc-89Da-RC | 2339 | CG14885-RC | 231..1196 | 16..981 | 2325 | 82.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:35:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16478826..16480833 | 16..2023 | 10040 | 100 | Plus |
3R | 32079331 | 3R | 16474486..16475368 | 1142..2024 | 2600 | 86.3 | Plus |
3R | 32079331 | 3R | 16473369..16474334 | 16..981 | 2325 | 82.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:35:47 has no hits.
BO07833.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:03 Download gff for
BO07833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gyc-89Db-RA | 1..2010 | 17..2024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:44 Download gff for
BO07833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gyc-89Db-RA | 276..2286 | 9..2023 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:46 Download gff for
BO07833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gyc-89Db-RA | 541..2547 | 17..2025 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:03 Download gff for
BO07833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gyc-89Db-RA | 276..2286 | 9..2023 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:14 Download gff for
BO07833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gyc-89Db-RA | 541..2547 | 17..2025 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:14 Download gff for
BO07833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16478827..16480833 | 17..2025 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:46 Download gff for
BO07833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12304549..12306555 | 17..2025 | 99 | | Plus |
BO07833.pep Sequence
Translation from 16 to 2041
> BO07833.pep
MYGMLYESVQHYIQQEYGMETWRKVCQIVDCKHQSFKTHQIYPDKLMPDF
AAALSASTGESFDFCMNFFGRCFVRFFSNFGYDKMIRSTGRYFCDFLQSI
DNIHVQMRFTYPKMKSPSMQLTNMDDDGAVILYRSGRTGMSKYLIGQMTE
VAKEFYGLDMTAYVLESQNDICGGTAGPIKLTEGPLTVIVKYRLDFDNRD
YMAKRVNVIAHPSQLKMPSVDLNVFLELFPFTIVLDHDMKITLAGEKIVE
TWILHNPGVNPKTFIGSHILERFKCRRPKDTQIQWETILQMRTVLFEFEL
IRTGHNRAAYDAALNFDFENFDEASSLNEAQAMALASAKEFSAENAKEEA
AAAATSKDEIDPATGQRRHSVGLRSILLKGQMFYIKDVDSLIFLCSPLIE
NLDELHGIGLYLNDLNPHGLSRELVMAGWQHCSKLEIMFEKEEQRSDELE
KSLELADSWKRQGDELLYSMIPRPIAERMRKSEEHVCQSFEEVSVIFIEV
MNIYDSGSNNIQDAMQAVTTLNKVFSALDEEIISPFVYKVETVGMVYMAV
SGAPDVNPLHAEHACDLALRVMKKVKAHALPGVAIRVGINSGPVVAGVVG
MKVPRYCLFGDTVNTASRMESSSDPWMIQLSNYTALKVQKVGYKVEARGF
VKVKGKGEMETYWLLEGPEASFLDH
BO07833.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:36:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gyc-89Db-PA | 669 | CG14886-PA | 1..669 | 1..669 | 3491 | 100 | Plus |
Gyc-89Da-PC | 667 | CG14885-PC | 1..666 | 1..669 | 3012 | 85.2 | Plus |
Gyc-89Da-PB | 667 | CG14885-PB | 1..666 | 1..669 | 3012 | 85.2 | Plus |
Gyc88E-PF | 1090 | CG4154-PF | 1..594 | 1..666 | 904 | 33.5 | Plus |
Gyc88E-PE | 1097 | CG4154-PE | 1..594 | 1..666 | 904 | 33.5 | Plus |