Clone BO07833 Report

Search the DGRC for BO07833

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:78
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptGyc-89Db-RA
Protein status:BO07833.pep: validated full length
Sequenced Size:2041

Clone Sequence Records

BO07833.3prime Sequence

931 bp (787 high quality bases) assembled on 2006-01-06

> BO07833.3prime
ATGGTCTAGAAAGCTTGCCTCTGGTCCCTCCAAAAGCCAGTAGGTCTCCA
TCTCGCCCTTGCCCTTGACCTTGACAAATCCCCGCGCTTCAACCTTATAG
CCCACCTTTTGCACCTTCAGCGCAGTATAGTTGGACAGCTGGATCATCCA
GGGATCGCTGCTGCTCTCCATTCGCGAGGCGGTGTTAACGGTGTCTCCAA
AGAGACAGTATCGAGGAACCTTCATCCCAACCACGCCGGCGACGACGGGT
CCCGAGTTAATGCCCACCCGTATAGCCACCCCGGGAAGAGCATGGGCTTT
GACCTTCTTCATCACCCTTAAGGCCAAATCGCAGGCGTGTTCGGCATGCA
GGGGATTCACATCAGGAGCACCCGAAACAGCCATGTAAACCATGCCCACG
GTCTCCACTTTGTAAACAAACGGGGAAATGATCTCTTCGTCCAATGCCGA
AAACACTTTGTTTAAGGTGGTCACCGCCTGCATGGCATCCTGGATGTTGT
TGGACCCACTGTCATAGATATTCATTACCTCGATGAAAATGACGGATACC
TCCTCGAAACTCTGACACACGTGCTCCTCGCTCTTTCTCATTCGCTCGGC
AATGGGTCGCGGTATCATGGAATACAGTAGCTCATCTCCCTGCCGCTTCC
AGGAATCTGCCAGTTCCAGCGACTTTTCCAGCTCATCCGATCGCTGCTCC
TCCTTCTCAAACATTATCTCCAGCTTGGAGCAGTGCTGCCATCCCGCCAT
CACAAGCTCTCTACTCAGTCCATGCGGATTAAGATCGTTCAAATAGAGAC
CGATTCCATGCAGCTCATCGAGATTTTCGATTAGAGGACTGCACAGGAAG
ATCAGCGAGTCCACATCTTTGATATAGAACATTTGTCCCTTCAACAGGAT
AGATCGGAGGCCCACCGAATGGCGTCTCTGT

BO07833.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG14886-PA 2010 Gyc-89Db-RA 1095..2007 931..19 4565 100 Minus
CG14885-PB 2004 Gyc-89Da-RB 1117..1421 900..596 1175 95.4 Minus
CG14885-PC 2004 Gyc-89Da-RC 1117..1421 900..596 1175 95.4 Minus
CG14885-PB 2004 Gyc-89Da-RB 1582..1709 435..308 565 97.6 Minus
CG14885-PC 2004 Gyc-89Da-RC 1582..1709 435..308 565 97.6 Minus
CG14885-PB 2004 Gyc-89Da-RB 1795..1880 222..137 330 95.3 Minus
CG14885-PC 2004 Gyc-89Da-RC 1795..1880 222..137 330 95.3 Minus
CG14885-PB 2004 Gyc-89Da-RB 1946..1982 71..35 135 94.5 Minus
CG14885-PC 2004 Gyc-89Da-RC 1946..1982 71..35 135 94.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
Gyc-89Db-RA 2784 CG14886-RA 1635..2547 931..19 4565 100 Minus
Gyc-89Da-RC 2339 CG14885-RC 1348..2230 900..18 2615 86.5 Minus
Gyc-89Da-RB 2274 CG14885-RB 1283..2165 900..18 2615 86.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:45:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16479921..16480833 931..19 4565 100 Minus
3R 32079331 3R 16474486..16475368 900..18 2600 86.3 Minus
Blast to na_te.dros performed on 2015-02-09 19:45:30 has no hits.

BO07833.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:24 Download gff for BO07833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14886-PA 1095..2010 18..931 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:29 Download gff for BO07833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14886-PA 1095..2010 18..931 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:10:53 Download gff for BO07833.3prime
Subject Subject Range Query Range Percent Splice Strand
Gyc-89Db-RA 1635..2547 19..931 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:21:31 Download gff for BO07833.3prime
Subject Subject Range Query Range Percent Splice Strand
Gyc-89Db-RA 1635..2547 19..931 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:21:31 Download gff for BO07833.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16479921..16480833 19..931 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:10:53 Download gff for BO07833.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12305643..12306555 19..931 100   Minus

BO07833.5prime Sequence

938 bp (809 high quality bases) assembled on 2006-01-06

> BO07833.5prime
GAAGTTATCAGTCGACATGTACGGAATGCTGTACGAGAGCGTGCAGCACT
ATATCCAGCAGGAGTATGGCATGGAGACCTGGCGAAAGGTCTGCCAGATT
GTCGACTGCAAGCATCAGAGCTTCAAGACACATCAGATCTATCCGGACAA
GCTGATGCCGGACTTTGCGGCAGCCCTGTCCGCCAGCACGGGCGAGTCCT
TCGACTTCTGCATGAACTTCTTCGGGCGCTGTTTTGTGCGATTCTTCAGC
AACTTCGGCTACGACAAGATGATCCGCTCCACAGGGCGATACTTCTGCGA
CTTCCTGCAGTCCATCGACAACATTCACGTGCAGATGCGTTTCACCTATC
CCAAGATGAAGTCGCCCAGCATGCAGTTGACCAACATGGATGACGATGGG
GCTGTGATCCTGTACCGCAGCGGCCGAACTGGCATGTCCAAGTACCTGAT
TGGCCAGATGACCGAGGTGGCCAAGGAGTTCTACGGCCTAGACATGACTG
CCTATGTCCTGGAGAGCCAAAATGACATATGCGGTGGCACAGCCGGTCCC
ATCAAGCTTACGGAGGGTCCTCTGACCGTGATTGTCAAGTATCGGCTGGA
CTTCGATAATCGCGATTATATGGCCAAGCGGGTCAATGTCATCGCGCATC
CTTCGCAGCTGAAGATGCCGTCGGTGGACCTGAATGTGTTCCTCGAGCTG
TTTCCCTTCACCATTGTGCTGGATCACGACATGAAAATCACACTTGCGGG
CGAGAAGATTGTCGAGACGTGGATTCTGCATAATCCTGGAGTGAACCCAA
AGACCTTTATTGGCAGTCACATATTGGAGCGGTTCAAGTGCCGTCGTCCC
AAGGACACTCAGATCCAATGGGAGACCATCTGCAAATGCGTACAGTTCTC
TTCGAGTTTGAGCTCATCCGTACGGNTCACAATCGTGC

BO07833.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14886-PA 2010 Gyc-89Db-RA 1..863 17..879 4315 100 Plus
CG14885-PB 2004 Gyc-89Da-RB 161..312 177..328 710 98.6 Plus
CG14885-PC 2004 Gyc-89Da-RC 161..312 177..328 710 98.6 Plus
CG14886-PA 2010 Gyc-89Db-RA 864..923 879..938 281 98.3 Plus
CG14885-PB 2004 Gyc-89Da-RB 319..377 335..393 270 98.3 Plus
CG14885-PC 2004 Gyc-89Da-RC 319..377 335..393 270 98.3 Plus
CG14885-PB 2004 Gyc-89Da-RB 103..146 119..162 170 95.4 Plus
CG14885-PC 2004 Gyc-89Da-RC 103..146 119..162 170 95.4 Plus
CG14885-PB 2004 Gyc-89Da-RB 529..621 545..637 165 87 Plus
CG14885-PC 2004 Gyc-89Da-RC 529..621 545..637 165 87 Plus
CG14885-PB 2004 Gyc-89Da-RB 412..456 428..472 150 93.3 Plus
CG14885-PC 2004 Gyc-89Da-RC 412..456 428..472 150 93.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
Gyc-89Db-RA 2784 CG14886-RA 540..1463 16..938 4584 99.8 Plus
Gyc-89Da-RC 2339 CG14885-RC 231..1151 16..935 2229 83 Plus
Gyc-89Da-RB 2274 CG14885-RB 166..1086 16..935 2229 83 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:31:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16478826..16479749 16..938 4559 99.8 Plus
3R 32079331 3R 16473369..16474211 16..858 2205 84.1 Plus
Blast to na_te.dros performed on 2015-02-04 20:31:47 has no hits.

BO07833.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:25 Download gff for BO07833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14886-PA 1..923 17..938 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:30 Download gff for BO07833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14886-PA 1..923 17..938 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:26:30 Download gff for BO07833.5prime
Subject Subject Range Query Range Percent Splice Strand
Gyc-89Db-RA 537..1463 9..938 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:51:03 Download gff for BO07833.5prime
Subject Subject Range Query Range Percent Splice Strand
Gyc-89Db-RA 537..1463 9..938 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:51:03 Download gff for BO07833.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16478823..16479749 9..938 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:26:30 Download gff for BO07833.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12304545..12305471 9..938 99   Plus

BO07833.complete Sequence

2041 bp (2041 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630948

> BO07833.complete
GAAGTTATCAGTCGACATGTACGGAATGCTGTACGAGAGCGTGCAGCACT
ATATCCAGCAGGAGTATGGCATGGAGACCTGGCGAAAGGTCTGCCAGATT
GTCGACTGCAAGCATCAGAGCTTCAAGACACATCAGATCTATCCGGACAA
GCTGATGCCGGACTTTGCGGCAGCCCTGTCCGCCAGCACGGGCGAGTCCT
TCGACTTCTGCATGAACTTCTTCGGGCGCTGTTTTGTGCGATTCTTCAGC
AACTTCGGCTACGACAAGATGATCCGCTCCACAGGGCGATACTTCTGCGA
CTTCCTGCAGTCCATCGACAACATTCACGTGCAGATGCGTTTCACCTATC
CCAAGATGAAGTCGCCCAGCATGCAGTTGACCAACATGGATGACGATGGG
GCTGTGATCCTGTACCGCAGCGGCCGAACTGGCATGTCCAAGTACCTGAT
TGGCCAGATGACCGAGGTGGCCAAGGAGTTCTACGGCCTAGACATGACTG
CCTATGTCCTGGAGAGCCAAAATGACATATGCGGTGGCACAGCCGGTCCC
ATCAAGCTTACGGAGGGTCCTCTGACCGTGATTGTCAAGTATCGGCTGGA
CTTCGATAATCGCGATTATATGGCCAAGCGGGTCAATGTCATCGCGCATC
CTTCGCAGCTGAAGATGCCGTCGGTGGACCTGAATGTGTTCCTCGAGCTG
TTTCCCTTCACCATTGTGCTGGATCACGACATGAAAATCACACTTGCGGG
CGAGAAGATTGTCGAGACGTGGATTCTGCATAATCCTGGAGTGAACCCAA
AGACCTTTATTGGCAGTCACATATTGGAGCGGTTCAAGTGCCGTCGTCCC
AAGGACACTCAGATCCAATGGGAGACCATTCTGCAAATGCGTACAGTTCT
CTTCGAGTTTGAGCTCATCCGTACGGGTCACAATCGTGCCGCCTATGATG
CGGCCTTGAACTTTGACTTTGAAAACTTTGATGAAGCCAGCAGCCTGAAC
GAGGCGCAGGCCATGGCTTTGGCCAGTGCCAAGGAGTTTAGTGCGGAGAA
CGCCAAGGAAGAGGCAGCAGCGGCAGCCACCTCCAAGGACGAAATCGATC
CCGCCACGGGACAGAGACGCCATTCGGTGGGCCTCCGATCTATCCTGTTG
AAGGGACAAATGTTCTATATCAAAGATGTGGACTCGCTGATCTTCCTGTG
CAGTCCTCTAATCGAAAATCTCGATGAGCTGCATGGAATCGGTCTCTATT
TGAACGATCTTAATCCGCATGGACTGAGTAGAGAGCTTGTGATGGCGGGA
TGGCAGCACTGCTCCAAGCTGGAGATAATGTTTGAGAAGGAGGAGCAGCG
ATCGGATGAGCTGGAAAAGTCGCTGGAACTGGCAGATTCCTGGAAGCGGC
AGGGAGATGAGCTACTGTATTCCATGATACCGCGACCCATTGCCGAGCGA
ATGAGAAAGAGCGAGGAGCACGTGTGTCAGAGTTTCGAGGAGGTATCCGT
CATTTTCATCGAGGTAATGAATATCTATGACAGTGGGTCCAACAACATCC
AGGATGCCATGCAGGCGGTGACCACCTTAAACAAAGTGTTTTCGGCATTG
GACGAAGAGATCATTTCCCCGTTTGTTTACAAAGTGGAGACCGTGGGCAT
GGTTTACATGGCTGTTTCGGGTGCTCCTGATGTGAATCCCCTGCATGCCG
AACACGCCTGCGATTTGGCCTTAAGGGTGATGAAGAAGGTCAAAGCCCAT
GCTCTTCCCGGGGTGGCTATACGGGTGGGCATTAACTCGGGACCCGTCGT
CGCCGGCGTGGTTGGGATGAAGGTTCCTCGATACTGTCTCTTTGGAGACA
CCGTTAACACCGCCTCGCGAATGGAGAGCAGCAGCGATCCCTGGATGATC
CAGCTGTCCAACTATACTGCGCTGAAGGTGCAAAAGGTGGGCTATAAGGT
TGAAGCGCGGGGATTTGTCAAGGTCAAGGGCAAGGGCGAGATGGAGACCT
ACTGGCTTTTGGAGGGACCAGAGGCAAGCTTTCTAGACCAT

BO07833.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
Gyc-89Db-RA 2010 CG14886-PA 1..2007 17..2023 10035 100 Plus
Gyc-89Da-RC 2004 CG14885-PC 1117..1999 1142..2024 2600 86.3 Plus
Gyc-89Da-RB 2004 CG14885-PB 1117..1999 1142..2024 2600 86.3 Plus
Gyc-89Da-RC 2004 CG14885-PC 1..965 17..981 2320 82.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
Gyc-89Db-RA 2784 CG14886-RA 540..2547 16..2023 10040 100 Plus
Gyc-89Da-RC 2339 CG14885-RC 1348..2230 1142..2024 2600 86.3 Plus
Gyc-89Da-RB 2274 CG14885-RB 1283..2165 1142..2024 2600 86.3 Plus
Gyc-89Da-RC 2339 CG14885-RC 231..1196 16..981 2325 82.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16478826..16480833 16..2023 10040 100 Plus
3R 32079331 3R 16474486..16475368 1142..2024 2600 86.3 Plus
3R 32079331 3R 16473369..16474334 16..981 2325 82.7 Plus
Blast to na_te.dros performed on 2014-11-27 06:35:47 has no hits.

BO07833.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:03 Download gff for BO07833.complete
Subject Subject Range Query Range Percent Splice Strand
Gyc-89Db-RA 1..2010 17..2024 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:44 Download gff for BO07833.complete
Subject Subject Range Query Range Percent Splice Strand
Gyc-89Db-RA 276..2286 9..2023 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:46 Download gff for BO07833.complete
Subject Subject Range Query Range Percent Splice Strand
Gyc-89Db-RA 541..2547 17..2025 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:03 Download gff for BO07833.complete
Subject Subject Range Query Range Percent Splice Strand
Gyc-89Db-RA 276..2286 9..2023 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:14 Download gff for BO07833.complete
Subject Subject Range Query Range Percent Splice Strand
Gyc-89Db-RA 541..2547 17..2025 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:14 Download gff for BO07833.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16478827..16480833 17..2025 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:46 Download gff for BO07833.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12304549..12306555 17..2025 99   Plus

BO07833.pep Sequence

Translation from 16 to 2041

> BO07833.pep
MYGMLYESVQHYIQQEYGMETWRKVCQIVDCKHQSFKTHQIYPDKLMPDF
AAALSASTGESFDFCMNFFGRCFVRFFSNFGYDKMIRSTGRYFCDFLQSI
DNIHVQMRFTYPKMKSPSMQLTNMDDDGAVILYRSGRTGMSKYLIGQMTE
VAKEFYGLDMTAYVLESQNDICGGTAGPIKLTEGPLTVIVKYRLDFDNRD
YMAKRVNVIAHPSQLKMPSVDLNVFLELFPFTIVLDHDMKITLAGEKIVE
TWILHNPGVNPKTFIGSHILERFKCRRPKDTQIQWETILQMRTVLFEFEL
IRTGHNRAAYDAALNFDFENFDEASSLNEAQAMALASAKEFSAENAKEEA
AAAATSKDEIDPATGQRRHSVGLRSILLKGQMFYIKDVDSLIFLCSPLIE
NLDELHGIGLYLNDLNPHGLSRELVMAGWQHCSKLEIMFEKEEQRSDELE
KSLELADSWKRQGDELLYSMIPRPIAERMRKSEEHVCQSFEEVSVIFIEV
MNIYDSGSNNIQDAMQAVTTLNKVFSALDEEIISPFVYKVETVGMVYMAV
SGAPDVNPLHAEHACDLALRVMKKVKAHALPGVAIRVGINSGPVVAGVVG
MKVPRYCLFGDTVNTASRMESSSDPWMIQLSNYTALKVQKVGYKVEARGF
VKVKGKGEMETYWLLEGPEASFLDH

BO07833.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
Gyc-89Db-PA 669 CG14886-PA 1..669 1..669 3491 100 Plus
Gyc-89Da-PC 667 CG14885-PC 1..666 1..669 3012 85.2 Plus
Gyc-89Da-PB 667 CG14885-PB 1..666 1..669 3012 85.2 Plus
Gyc88E-PF 1090 CG4154-PF 1..594 1..666 904 33.5 Plus
Gyc88E-PE 1097 CG4154-PE 1..594 1..666 904 33.5 Plus