Clone Sequence Records
BO07834.3prime Sequence
964 bp (815 high quality bases) assembled on 2006-01-06
> BO07834.3prime
ATGGTCTAGAAAGCTTGCGTCTTCGGAGGCATCGCGCACAGCCTCTGTGG
AAGACTCGGCACCACTGGGTGTCTCCTCCTCCTCGGAATAGTCCTCGTCA
TGGGTGTGGGTCACCACGGTGGGCGTCGACGGACGAGTGTGCACAATGGA
GCTTGCGCGATGCAAGTCCTTGGGGTCCTTAACGTGCTCGGCGGTGCCCG
CCAAAATGCGAGCCGGCTCATCCGGCGAGGCAGCCACCGATGCGGCTCCC
GTAGCCGGAACAGGAACAGGGCCCAGTGGCGGAGGCGGCTGATGGGCCTG
ATCATGGGCCACCGTCGACTCATGGGGCAGAAGCATGGCCGGAGCTCGGA
ACATATACGAGAATGGGTAGTAAATGAGGTTGAGCAGGGTGGCCGCATAG
ACGTCGGCATATCGCACCACCTGGCTGGAGAAGAAGGTCTGGCGCGAGCC
GGAGCGGAAGAGTGAGCCCATCATACCGTAGGACATGTCCATCTTGTGTG
TCACATCGCGGATGCACGTGCGCAGCTGCGAAATGTCCGGCTTGACCTTG
GCACTCGAGTCGAGATCCCTGTACAGGTCGCCCAGCTTGATGTCCAGGTT
CTGTAGCTCCGCAAACAGCTGGCACTCATCCGTCCAAACGTGCAGCTCCC
TCACCAATTCGGGCACAATTAGGAAGGTGCGCCAGCCTCGAATCTTCTTC
GATTTGAGAATATCGCCAAAAATGTGATCGCCCACATAGAGCACGTCCTT
GCCTTTGGCATTGATGAACTTGGTAAAGAGCTCGCAGGAGCCACCGGAAT
AAACCTGACCCGGCTGCAGGGGTCCAACGTGTGTGCCGATCTTCAGGCTT
CCGGTCTTCGTGTCCACCTGCCGCAGCACGGTGCCCTCGTCGAAGAAGAG
CGGCTTGCGGGCATCCACCACGATCACATCGAAGTAGGTCTTCCAGTCGC
GATGCGGCTCATCC
BO07834.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32549-PD | 1746 | CG32549-RD | 798..1743 | 964..19 | 4730 | 100 | Minus |
CG32549-PE | 1893 | CG32549-RE | 945..1890 | 964..19 | 4730 | 100 | Minus |
CG32549-PC | 1527 | CG32549-RC | 579..1524 | 964..19 | 4730 | 100 | Minus |
CG32549-PA | 2148 | CG32549-RA | 1200..2145 | 964..19 | 4730 | 100 | Minus |
CG32549-PB | 1839 | CG32549-RB | 891..1836 | 964..19 | 4730 | 100 | Minus |
CG32549-PF | 1839 | CG32549-RF | 891..1836 | 964..19 | 4730 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:06:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32549-RH | 2677 | CG32549-RH | 1490..2435 | 964..19 | 4730 | 100 | Minus |
CG32549-RG | 2806 | CG32549-RG | 1619..2564 | 964..19 | 4730 | 100 | Minus |
CG32549-RF | 2652 | CG32549-RF | 1407..2352 | 964..19 | 4730 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:06:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18390998..18391808 | 154..964 | 4055 | 100 | Plus |
X | 23542271 | X | 18390798..18390932 | 19..153 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:06:22 has no hits.
BO07834.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:25 Download gff for
BO07834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32549-PA | 1200..2148 | 18..964 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:32 Download gff for
BO07834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32549-PF | 891..1839 | 18..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:46:38 Download gff for
BO07834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32549-RF | 1407..2352 | 19..964 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:04:45 Download gff for
BO07834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32549-RF | 1407..2352 | 19..964 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:04:45 Download gff for
BO07834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18390798..18390932 | 19..153 | 100 | <- | Plus |
X | 18390998..18391808 | 154..964 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:46:38 Download gff for
BO07834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18284831..18284965 | 19..153 | 100 | <- | Plus |
arm_X | 18285031..18285841 | 154..964 | 100 | | Plus |
BO07834.5prime Sequence
922 bp (800 high quality bases) assembled on 2006-01-06
> BO07834.5prime
GAAGTTATCAGTCGACATGGGCTACCCCAAGGAGATCCTGCAGTTCGAGT
ACGATCCCACCTTCCCAGTACGCGGCCTGTGGTTCGACACTCTCTACGGG
AATCTGCTGAAAGTGGATGCCTACGGCAACATCCTGGTCTGCGTTCATGG
CTTCGAGTTCATCAAACATCACCAGGTGTACGAGTTGTATCCCAACAAGT
TCTTGAAACTGGACGAGTCGCGTGTCTATGTCCTGAATACTCTCTTCAAT
CTTCCTGAAACCTATCTCCTTGCCTGTCTCGTCGACTTCCTAACCAACAG
CAGCGACTTTGTGCGCGTTGAGCGCGGCATCAAAGCTGGCGATTTACTTT
TTACCTACAAGTCGATTTTCCAGGATGTGCGACGTGCCGTCGACTGGGTG
CATTCCGATGGCGATCTGAAGCGTCGCACCACTCAGAATATGGCTCACTA
TGTGAAGAAGGACGAGCGTTTGCCCACGGTCCTTTCGCGAATCCGGGAGT
CGGGCGCCAAACTCTTTATGCTGACCAACAGCGACTATACGTACACCAAC
GAGATCATGACCTACCTGTTTGATTTCCCCCATGGCGCCACTCCGGATGA
GCCGCATCGCGACTGGAAGACCTACTTCGATGTGATCGTGGTGGATGCCC
GCAAGCCGCTCTTCTTCGACGAGGGCACCGTGCTGCGGCAGGTGGACACG
AAGACCGGAAGCCTGAAGATCGGCACACACGTTGGACCCCTGCAGCCGGG
TCAGGTTTATTCCGGTGGCTCCTGCGAGCTCTTTACCAAGTTCATCAATG
CCAAAGGCAAGGACGTGCTCTATGTGGGCGATCACATTTTTGGCGATATT
CTCAAATCGAAGAAGATTCGAGGCTGGCGCACCTTCCTAATTGTGCCCGA
ATTGGTGAGGGAGCTGCACGTT
BO07834.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32549-PD | 1746 | CG32549-RD | 219..1125 | 16..922 | 4535 | 100 | Plus |
CG32549-PE | 1893 | CG32549-RE | 366..1272 | 16..922 | 4535 | 100 | Plus |
CG32549-PA | 2148 | CG32549-RA | 621..1527 | 16..922 | 4535 | 100 | Plus |
CG32549-PB | 1839 | CG32549-RB | 312..1218 | 16..922 | 4535 | 100 | Plus |
CG32549-PF | 1839 | CG32549-RF | 312..1218 | 16..922 | 4535 | 100 | Plus |
CG32549-PC | 1527 | CG32549-RC | 1..906 | 17..922 | 4530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:01:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32549-RH | 2677 | CG32549-RH | 911..1817 | 16..922 | 4535 | 100 | Plus |
CG32549-RG | 2806 | CG32549-RG | 1040..1946 | 16..922 | 4535 | 100 | Plus |
CG32549-RF | 2652 | CG32549-RF | 828..1734 | 16..922 | 4535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:01:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18391481..18391968 | 922..435 | 2440 | 100 | Minus |
X | 23542271 | X | 18392549..18392701 | 168..16 | 765 | 100 | Minus |
X | 23542271 | X | 18392335..18392481 | 315..169 | 735 | 100 | Minus |
X | 23542271 | X | 18392040..18392161 | 436..315 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:01:40 has no hits.
BO07834.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:26 Download gff for
BO07834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32549-PA | 616..1527 | 11..922 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:33 Download gff for
BO07834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32549-PF | 307..1218 | 11..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:57:15 Download gff for
BO07834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32549-RF | 823..1734 | 11..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:44:06 Download gff for
BO07834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32549-RF | 823..1734 | 11..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:44:06 Download gff for
BO07834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18391481..18391966 | 437..922 | 100 | <- | Minus |
X | 18392040..18392160 | 316..436 | 100 | <- | Minus |
X | 18392335..18392481 | 169..315 | 100 | <- | Minus |
X | 18392549..18392706 | 11..168 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:57:15 Download gff for
BO07834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18285514..18285999 | 437..922 | 100 | <- | Minus |
arm_X | 18286073..18286193 | 316..436 | 100 | <- | Minus |
arm_X | 18286368..18286514 | 169..315 | 100 | <- | Minus |
arm_X | 18286582..18286739 | 11..168 | 98 | | Minus |
BO07834.complete Sequence
1558 bp (1558 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630949
> BO07834.complete
GAAGTTATCAGTCGACATGGGCTACCCCAAGGAGATCCTGCAGTTCGAGT
ACGATCCCACCTTCCCAGTACGCGGCCTGTGGTTCGACACTCTCTACGGG
AATCTGCTGAAAGTGGATGCCTACGGCAACATCCTGGTCTGCGTTCATGG
CTTCGAGTTCATCAAACATCACCAGGTGTACGAGTTGTATCCCAACAAGT
TCTTGAAACTGGACGAGTCGCGTGTCTATGTCCTGAATACTCTCTTCAAT
CTTCCTGAAACCTATCTCCTTGCCTGTCTCGTCGACTTCCTAACCAACAG
CAGCGACTTTGTGCGCGTTGAGCGCGGCATCAAAGCTGGCGATTTACTTT
TTACCTACAAGTCGATTTTCCAGGATGTGCGACGTGCCGTCGACTGGGTG
CATTCCGATGGCGATCTGAAGCGTCGCACCACTCAGAATATGGCTCACTA
TGTGAAGAAGGACGAGCGTTTGCCCACGGTCCTTTCGCGAATCCGGGAGT
CGGGCGCCAAACTCTTTATGCTGACCAACAGCGACTATACGTACACCAAC
GAGATCATGACCTACCTGTTTGATTTCCCCCATGGCGCCACTCCGGATGA
GCCGCATCGCGACTGGAAGACCTACTTCGATGTGATCGTGGTGGATGCCC
GCAAGCCGCTCTTCTTCGACGAGGGCACCGTGCTGCGGCAGGTGGACACG
AAGACCGGAAGCCTGAAGATCGGCACACACGTTGGACCCCTGCAGCCGGG
TCAGGTTTATTCCGGTGGCTCCTGCGAGCTCTTTACCAAGTTCATCAATG
CCAAAGGCAAGGACGTGCTCTATGTGGGCGATCACATTTTTGGCGATATT
CTCAAATCGAAGAAGATTCGAGGCTGGCGCACCTTCCTAATTGTGCCCGA
ATTGGTGAGGGAGCTGCACGTTTGGACGGATGAGTGCCAGCTGTTTGCGG
AGCTACAGAACCTGGACATCAAGCTGGGCGACCTGTACAGGGATCTCGAC
TCGAGTGCCAAGGTCAAGCCGGACATTTCGCAGCTGCGCACGTGCATCCG
CGATGTGACACACAAGATGGACATGTCCTACGGTATGATGGGCTCACTCT
TCCGCTCCGGCTCGCGCCAGACCTTCTTCTCCAGCCAGGTGGTGCGATAT
GCCGACGTCTATGCGGCCACCCTGCTCAACCTCATTTACTACCCATTCTC
GTATATGTTCCGAGCTCCGGCCATGCTTCTGCCCCATGAGTCGACGGTGG
CCCATGATCAGGCCCATCAGCCGCCTCCGCCACTGGGCCCTGTTCCTGTT
CCGGCTACGGGAGCCGCATCGGTGGCTGCCTCGCCGGATGAGCCGGCTCG
CATTTTGGCGGGCACCGCCGAGCACGTTAAGGACCCCAAGGACTTGCATC
GCGCAAGCTCCATTGTGCACACTCGTCCGTCGACGCCCACCGTGGTGACC
CACACCCATGACGAGGACTATTCCGAGGAGGAGGAGACACCCAGTGGTGC
CGAGTCTTCCACAGAGGCTGTGCGCGATGCCTCCGAAGACGCAAGCTTTC
TAGACCAT
BO07834.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:58:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32549-RH | 2130 | CG32549-PH | 603..2127 | 16..1540 | 7625 | 100 | Plus |
CG32549-RG | 2130 | CG32549-PG | 603..2127 | 16..1540 | 7625 | 100 | Plus |
CG32549-RF | 1839 | CG32549-PF | 312..1836 | 16..1540 | 7625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:58:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32549-RH | 2677 | CG32549-RH | 911..2435 | 16..1540 | 7625 | 100 | Plus |
CG32549-RG | 2806 | CG32549-RG | 1040..2564 | 16..1540 | 7625 | 100 | Plus |
CG32549-RF | 2652 | CG32549-RF | 828..2352 | 16..1540 | 7625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:58:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18390998..18391968 | 1405..435 | 4855 | 100 | Minus |
X | 23542271 | X | 18392549..18392701 | 168..16 | 765 | 100 | Minus |
X | 23542271 | X | 18392335..18392481 | 315..169 | 735 | 100 | Minus |
X | 23542271 | X | 18390798..18390932 | 1540..1406 | 675 | 100 | Minus |
X | 23542271 | X | 18392040..18392161 | 436..315 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:58:42 has no hits.
BO07834.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:26 Download gff for
BO07834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32549-RA | 616..2148 | 11..1541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:01 Download gff for
BO07834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32549-RC | 57..1586 | 11..1540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:14:38 Download gff for
BO07834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32549-RF | 829..2352 | 17..1542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:26 Download gff for
BO07834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32549-RC | 57..1586 | 11..1540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:29:53 Download gff for
BO07834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32549-RF | 829..2352 | 17..1542 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:29:53 Download gff for
BO07834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18390796..18390932 | 1406..1542 | 98 | <- | Minus |
X | 18390998..18391966 | 437..1405 | 100 | <- | Minus |
X | 18392040..18392160 | 316..436 | 100 | <- | Minus |
X | 18392335..18392481 | 169..315 | 100 | <- | Minus |
X | 18392549..18392700 | 17..168 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:14:38 Download gff for
BO07834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18284829..18284965 | 1406..1542 | 98 | <- | Minus |
arm_X | 18285031..18285999 | 437..1405 | 100 | <- | Minus |
arm_X | 18286073..18286193 | 316..436 | 100 | <- | Minus |
arm_X | 18286368..18286514 | 169..315 | 100 | <- | Minus |
arm_X | 18286582..18286733 | 17..168 | 100 | | Minus |
BO07834.pep Sequence
Translation from 16 to 1558
> BO07834.pep
MGYPKEILQFEYDPTFPVRGLWFDTLYGNLLKVDAYGNILVCVHGFEFIK
HHQVYELYPNKFLKLDESRVYVLNTLFNLPETYLLACLVDFLTNSSDFVR
VERGIKAGDLLFTYKSIFQDVRRAVDWVHSDGDLKRRTTQNMAHYVKKDE
RLPTVLSRIRESGAKLFMLTNSDYTYTNEIMTYLFDFPHGATPDEPHRDW
KTYFDVIVVDARKPLFFDEGTVLRQVDTKTGSLKIGTHVGPLQPGQVYSG
GSCELFTKFINAKGKDVLYVGDHIFGDILKSKKIRGWRTFLIVPELVREL
HVWTDECQLFAELQNLDIKLGDLYRDLDSSAKVKPDISQLRTCIRDVTHK
MDMSYGMMGSLFRSGSRQTFFSSQVVRYADVYAATLLNLIYYPFSYMFRA
PAMLLPHESTVAHDQAHQPPPPLGPVPVPATGAASVAASPDEPARILAGT
AEHVKDPKDLHRASSIVHTRPSTPTVVTHTHDEDYSEEEETPSGAESSTE
AVRDASEDASFLDH
BO07834.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32549-PH | 709 | CG32549-PH | 202..709 | 1..508 | 2689 | 100 | Plus |
CG32549-PG | 709 | CG32549-PG | 202..709 | 1..508 | 2689 | 100 | Plus |
CG32549-PF | 612 | CG32549-PF | 105..612 | 1..508 | 2689 | 100 | Plus |
CG32549-PB | 612 | CG32549-PB | 105..612 | 1..508 | 2689 | 100 | Plus |
CG32549-PE | 630 | CG32549-PE | 123..630 | 1..508 | 2689 | 100 | Plus |