Clone Sequence Records
BO07835.3prime Sequence
959 bp (778 high quality bases) assembled on 2006-01-06
> BO07835.3prime
ATGGTCTAGAAAGCTTGCGGCCTTGGATGGATTCTCTTCGTTGGTGGGAA
CGGGCGCTATTTCCGTCTTGGTCTCCACAACGGACTCGGGTTTGGCTTCC
GGTTCCGGTTCAGCGGAAGCAGAAGTGGCTGCCACCGGGGCAGCCTTGGC
CAGCTCTCCGGGAGATGGCTTCTTGGGCGCCGGCTTGCCGAATATGGCCT
TCTCGATGCCCAAAATGGGTGCCTCGAAGGCCAAGGTGGCGAAGATCGAG
GCGGTGAGGGTGATGCCAAAGTCATGCCACCAGCGGAGGATCGCATCGTA
GTTGGAGAAGTGGGTATCTGTCTGCAGACGAGCGGCGTTGACCAGCTGGA
CAATGCGATGAATGACGTACATACAGTAACACAGTCGGCTGAAGCCCGTG
AAGAATCCCCAGGACAAGAAGTCATTGACCAGACCGCCGTGACCATTGTA
GCAGGCCCAAACGATCCAACCAATGGACAGAGCCCACGACGTTCTGCTCA
GGGGCTCAAAGAATGCGCCTTCGATCAGGGGCGAGTCGGGAGTATCCGGC
AGGATGCGCCAGTATGGTCCCCACATGCAGGCCAACATCGTTCCGAAGGC
CACGAACCAACCGGTCAGCACCAGTGGCTTGGACATCGGAATCTGGCGTC
CACGGTTACGGGTAAACAGGAAGTAGCCAAAGATCACGCCAATCAACCAA
GTGGGAATTCGAGTGTGCGTTGGATAGTAGGTCAACCGCTGTCGCAGATC
CACTTGATCGTCCTGCACGCGGAAAAGCGTAAAGTCATTCAACATAAAGG
TGGCGAAAGTTCCACCCAAGCACAAGATCAGTACGATCACGATGGGCACC
AAGGCCTTCTTTCCCCATTTTCCCAGCGGAATGAGGGACAGCGGCGAAAG
GAAGTACAGCTGGGTGTCCACGCCAAATACCACGATTGAGATATGCAAAT
GCTGTAAGG
BO07835.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3106-PA | 2229 | CG3106-RA | 1323..2226 | 922..19 | 4445 | 99.6 | Minus |
| CG3106-PA | 2229 | CG3106-RA | 1288..1322 | 956..922 | 175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:38:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3106-RB | 2589 | CG3106-RB | 1540..2478 | 956..19 | 4625 | 99.6 | Minus |
| CG3106-RA | 2443 | CG3106-RA | 1395..2333 | 956..19 | 4625 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:38:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9659543..9660199 | 292..947 | 3190 | 99.4 | Plus |
| X | 23542271 | X | 9659206..9659479 | 19..292 | 1370 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:38:34 has no hits.
BO07835.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:27 Download gff for
BO07835.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-PA | 1285..2229 | 18..959 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:34 Download gff for
BO07835.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-PA | 1285..2229 | 18..959 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:08:04 Download gff for
BO07835.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-RA | 1392..2333 | 19..959 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:19:54 Download gff for
BO07835.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-RA | 1392..2333 | 19..959 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:19:54 Download gff for
BO07835.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9659206..9659478 | 19..291 | 100 | <- | Plus |
| X | 9659543..9660204 | 292..951 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:08:04 Download gff for
BO07835.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9553239..9553511 | 19..291 | 100 | <- | Plus |
| arm_X | 9553576..9554237 | 292..951 | 99 | | Plus |
BO07835.5prime Sequence
783 bp (781 high quality bases) assembled on 2006-01-06
> BO07835.5prime
GAAGTTATCAGTCGACATGATGGAGCATTTCGGTGTCCTGGCCGTCGTGC
TGCTGATCGCGACTGCTGTCGGTGCCCAGGATACTTCGTCCAACTATCTG
CTCACCGGTCACTCAACTCCGCTGGCCAGCAGCTTTGCCCACCAGTTCTT
TACCTTGGCCTCGCAAAGCGCTGAGCTCGCCAATAGGACGAACACCCAGG
TGATTCAAACCTACGAGGATCGCAACTACGACGATGAGCTCTGCGATCGG
GATATCAACCTAATCAGGGATTCAATCAACAACTTGGAGGAGTGGGCACT
GGAATTTCCCGACACATGGGGTCGTTTGCCCATGGGTCTCTTCTGGGGAC
ACACCATCAGCATGGGTCAGTACGAGGAGTGCGTAGCAGCTAGCTCTACC
CACACCACAGAGATTCGTGGACAGTATTGCTTGGCTAGTTTGAACATAAC
TACGTTTTATCAATCGGTTAAGAAACGCGGCGAAGAGTTCTCACGTATTA
GCTATAAGCAAACAGATCCGGAAGTCTTTGAGCTTGGCATTTGTGTTCCA
AAGACATGCAGTGCTGCAAAGACCGAAAAATTGCTCAAGTACGCTATCAC
CCACTTTTATGGACAGGATGTGATGGAATCAAACTACACAATGGTGACGG
AAGCGCGCTGCAAATACGATGCACCCATCGAGCTGCGCGGCATTGACATA
TTCGCAATCATTTTCTTCTCGCTGATCATCTTCTTCATGGTTGCCAGCAG
TGTCTACGATTATATTCAGACCCGCAAAGGAGC
BO07835.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3106-PA | 2229 | CG3106-RA | 1..767 | 17..783 | 3835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:01:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3106-RB | 2589 | CG3106-RB | 253..1019 | 17..783 | 3835 | 100 | Plus |
| CG3106-RA | 2443 | CG3106-RA | 108..874 | 17..783 | 3835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:01:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9661022..9661424 | 708..306 | 2015 | 100 | Minus |
| X | 23542271 | X | 9662363..9662651 | 305..17 | 1445 | 100 | Minus |
| X | 23542271 | X | 9660881..9660954 | 782..709 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:01:53 has no hits.
BO07835.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:28 Download gff for
BO07835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-PA | 1..767 | 17..783 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:35 Download gff for
BO07835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-PA | 1..767 | 17..783 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:57:16 Download gff for
BO07835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-RA | 108..874 | 17..783 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:44:31 Download gff for
BO07835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-RA | 108..874 | 17..783 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:44:31 Download gff for
BO07835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9660880..9660954 | 709..783 | 98 | <- | Minus |
| X | 9661022..9661424 | 306..708 | 100 | <- | Minus |
| X | 9662363..9662651 | 17..305 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:57:16 Download gff for
BO07835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9554913..9554987 | 709..783 | 98 | <- | Minus |
| arm_X | 9555055..9555457 | 306..708 | 100 | <- | Minus |
| arm_X | 9556396..9556684 | 17..305 | 100 | | Minus |
BO07835.complete Sequence
2260 bp (2260 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630950
> BO07835.complete
GAAGTTATCAGTCGACATGATGGAGCATTTCGGTGTCCTGGCCGTCGTGC
TGCTGATCGCGACTGCTGTCGGTGCCCAGGATACTTCGTCCAACTATCTG
CTCACCGGTCACTCAACTCCGCTGGCCAGCAGCTTTGCCCACCAGTTCTT
TACCTTGGCCTCGCAAAGCGCTGAGCTCGCCAATAGGACGAACACCCAGG
TGATTCAAACCTACGAGGATCGCAACTACGACGATGAGCTCTGCGATCGG
GATATCAACCTAATCAGGGATTCAATCAACAACTTGGAGGAGTGGGCACT
GGAATTTCCCGACACATGGGGTCGTTTGCCCATGGGTCTCTTCTGGGGAC
ACACCATCAGCATGGGTCAGTACGAGGAGTGCGTAGCAGCTAGCTCTACC
CACACCACAGAGATTCGTGGACAGTATTGCTTGGCTAGTTTGAACATAAC
TACGTTTTATCAATCGGTTAAGAAACGCGGCGAAGAGTTCTCACGTATTA
GCTATAAGCAAACAGATCCGGAAGTCTTTGAGCTTGGCATTTGTGTTCCA
AAGACATGCAGTGCTGCAAAGACCGAAAAATTGCTCAAGTACGCTATCAC
CCACTTTTATGGACAGGATGTGATGGAATCAAACTACACAATGGTGACGG
AAGCGCGCTGCAAATACGATGCACCCATCGAGCTGCGCGGCATTGACATA
TTCGCAATCATTTTCTTCTCGCTGATCATCTTCTTCATGGTTGCCAGCAG
TGTCTACGATTATATTCAGACCCGCAAAGGAGCCCCCAAAAAGCCACTGC
TGATCGCGTTTTCTGTACTGACAAATGCCCCCAAAATTTTCACCGTTAAG
AAGGTGAACAATCCCAATGTGATTCACTGCCTAAATGGATTGCGTTGCTT
TAGTATGATGTGGGTGGTATTTGGCCACGGCTATATGACCTTCTACGATC
TGCCACACATCAACAAAAACAAATTCTACACCTGGGTGCAGACCCCCTAT
TCGATGTTGGTCCAGAACGGCTCGCTTTGCGTGGACACGTTCTTCTTCAT
GTCCGGTCTGCTGATGTGCTGGGGTGCCTTCCGTGAAATGGAGCGCACCA
AGGGCAAGCTAAACATCCCGATGATGTATTTCCATCGCTACATTCGACTT
ACGCCAGTGGTGGCCGTCGTCGTTCTGTACATTATGTCACTGTATAAGTA
CTCGGGCGCCGGACCCATGTGGTTCAAGCTGGGCACCCAGGATAAGAGGT
GTGCCGACACCTGGTGGGCAACGCTGATCTACGTCCAGAACTATGCCTTC
CCCTACAGCATTTGCATATCTCAATCGTGGTATTTGGCCGTGGACACCCA
GCTGTACTTCCTTTCGCCGCTGTTCCTCATTCCGCTGTGGAAATGGGGAA
AGAAGGCCTTGGTGCCCATCGTGATCGTACTGATCTTGTGCTTGGGTGGA
ACTTTCGCCACCTTTATGTTGAATGACTTTACGCTTTTCCGCGTGCAGGA
CGATCAAGTGGATCTGCGACAGCGGTTGACCTACTATCCAACGCACACTC
GAATTCCCACTTGGTTGATTGGCGTGATCTTTGGCTACTTCCTGTTTACC
CGTAACCGTGGACGCCAGATTCCGATGTCCAAGCCACTGGTGCTGACCGG
TTGGTTCGTGGCCTTCGGAACGATGTTGGCCTGCATGTGGGGACCATACT
GGCGCATCCTGCCGGATACTCCCGACTCGCCCCTGATCGAAGGCGCATTC
TTTGAGCCCCTGAGCAGAACGTCGTGGGCTCTGTCCATTGGTTGGATCGT
TTGGGCCTGCTACAATGGTCACGGCGGTCTGGTCAATGACTTCTTGTCCT
GGGGATTCTTCACGGGCTTCAGCCGACTGTGTTACTGTATGTACGTCATT
CATCGCATTGTCCAGCTGGTCAACGCCGCTCGTCTGCAGACAGATACCCA
CTTCTCCAACTACGATGCGATCCTCCGCTGGTGGCATGACTTTGGCATCA
CCCTCACCGCCTCGATCTTCGCCACCTTGGCCTTCGAGGCACCCATTTTG
GGCATCGAGAAGGCCATATTCGGCAAGCCGGCGCCCAAGAAGCCATCTCC
CGGAGAGCTGGCCAAGGCTGCCCCGGTGGCAGCCACTTCTGCTTCCGCTG
AACCGGAACCGGAAGCCAAACCCGAGTCCGTTGTGGAGACCAAGACGGAA
ATAGCGCCCGTTCCCACCAACGAAGAGAATCCATCCAAGGCCGCAAGCTT
TCTAGACCAT
BO07835.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:09:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3106-RB | 2229 | CG3106-PB | 1..2226 | 17..2242 | 11130 | 100 | Plus |
| CG3106-RA | 2229 | CG3106-PA | 1..2226 | 17..2242 | 11130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:09:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3106-RB | 2589 | CG3106-RB | 253..2478 | 17..2242 | 11130 | 100 | Plus |
| CG3106-RA | 2443 | CG3106-RA | 108..2333 | 17..2242 | 11130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:09:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9659543..9660199 | 1969..1313 | 3285 | 100 | Minus |
| X | 23542271 | X | 9660286..9660817 | 1312..781 | 2660 | 100 | Minus |
| X | 23542271 | X | 9661022..9661424 | 708..306 | 2015 | 100 | Minus |
| X | 23542271 | X | 9662363..9662651 | 305..17 | 1445 | 100 | Minus |
| X | 23542271 | X | 9659206..9659479 | 2242..1969 | 1370 | 100 | Minus |
| X | 23542271 | X | 9660881..9660954 | 782..709 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:09:52 has no hits.
BO07835.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:04 Download gff for
BO07835.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-RA | 1..2229 | 17..2243 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:46 Download gff for
BO07835.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-RA | 106..2331 | 17..2242 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:05 Download gff for
BO07835.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-RA | 108..2333 | 17..2244 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:04 Download gff for
BO07835.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-RA | 106..2331 | 17..2242 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:11 Download gff for
BO07835.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-RA | 108..2333 | 17..2244 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:11 Download gff for
BO07835.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9659204..9659478 | 1970..2244 | 99 | <- | Minus |
| X | 9659543..9660199 | 1313..1969 | 100 | <- | Minus |
| X | 9660286..9660815 | 783..1312 | 100 | <- | Minus |
| X | 9660881..9660954 | 709..782 | 100 | <- | Minus |
| X | 9661022..9661424 | 306..708 | 100 | <- | Minus |
| X | 9662363..9662651 | 17..305 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:05 Download gff for
BO07835.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9553237..9553511 | 1970..2244 | 99 | <- | Minus |
| arm_X | 9553576..9554232 | 1313..1969 | 100 | <- | Minus |
| arm_X | 9554319..9554848 | 783..1312 | 100 | <- | Minus |
| arm_X | 9554914..9554987 | 709..782 | 100 | <- | Minus |
| arm_X | 9555055..9555457 | 306..708 | 100 | <- | Minus |
| arm_X | 9556396..9556684 | 17..305 | 100 | | Minus |
BO07835.pep Sequence
Translation from 16 to 2260
> BO07835.pep
MMEHFGVLAVVLLIATAVGAQDTSSNYLLTGHSTPLASSFAHQFFTLASQ
SAELANRTNTQVIQTYEDRNYDDELCDRDINLIRDSINNLEEWALEFPDT
WGRLPMGLFWGHTISMGQYEECVAASSTHTTEIRGQYCLASLNITTFYQS
VKKRGEEFSRISYKQTDPEVFELGICVPKTCSAAKTEKLLKYAITHFYGQ
DVMESNYTMVTEARCKYDAPIELRGIDIFAIIFFSLIIFFMVASSVYDYI
QTRKGAPKKPLLIAFSVLTNAPKIFTVKKVNNPNVIHCLNGLRCFSMMWV
VFGHGYMTFYDLPHINKNKFYTWVQTPYSMLVQNGSLCVDTFFFMSGLLM
CWGAFREMERTKGKLNIPMMYFHRYIRLTPVVAVVVLYIMSLYKYSGAGP
MWFKLGTQDKRCADTWWATLIYVQNYAFPYSICISQSWYLAVDTQLYFLS
PLFLIPLWKWGKKALVPIVIVLILCLGGTFATFMLNDFTLFRVQDDQVDL
RQRLTYYPTHTRIPTWLIGVIFGYFLFTRNRGRQIPMSKPLVLTGWFVAF
GTMLACMWGPYWRILPDTPDSPLIEGAFFEPLSRTSWALSIGWIVWACYN
GHGGLVNDFLSWGFFTGFSRLCYCMYVIHRIVQLVNAARLQTDTHFSNYD
AILRWWHDFGITLTASIFATLAFEAPILGIEKAIFGKPAPKKPSPGELAK
AAPVAATSASAEPEPEAKPESVVETKTEIAPVPTNEENPSKAASFLDH
BO07835.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:36:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3106-PB | 742 | CG3106-PB | 1..742 | 1..742 | 3986 | 100 | Plus |
| CG3106-PA | 742 | CG3106-PA | 1..742 | 1..742 | 3986 | 100 | Plus |
| CG42329-PA | 691 | CG5156-PA | 30..663 | 50..695 | 1209 | 36.6 | Plus |
| CG14205-PA | 713 | CG14205-PA | 61..702 | 55..711 | 1145 | 35.9 | Plus |
| CG14219-PA | 724 | CG14219-PA | 12..707 | 11..725 | 1119 | 34.3 | Plus |
