Clone Sequence Records
BO07836.5prime Sequence
800 bp (799 high quality bases) assembled on 2006-01-06
> BO07836.5prime
GAAGTTATCAGTCGACATGGATAGCTCGGTGCCATCCGGAGCCGAAAGCG
GTCTTATCAAGGAGTACAAGGACTTTGCCAAATGCCTGGACGAACTGGAG
TTCAAGACCGATGAGCTGCTAATCGATGCTAAAATGGTGGATCAGGAGTT
GGCCAACTGCCACAAGTTTCGCGAGGATCAGCTGCTGAAGCATCTGACGG
AGAAGAACGACGACGACGAGCAGATGCAGTTGCTGCGGGAAAACATCGAG
CTCAAGGCGACCGGCGTTGAGTTCCAACACGGCATTGAGCTGATCATGGA
GAAGTACCGTGAGCACAGCGAAGGGGACATGTTAATCGATACCTACCAAC
TGAGGGAGCACTACCTGGCCGGTTTGTCGAAGGTGGTCGAAGAGCAGGAT
GCCCGCATCGAGCGTATGGTTGATGTGATGAAGCTAACTGTCGACTTCGA
GGACCGGAGCAGTGCCGAGAACCAGCAGATCATTTGCCAGCTGACTGATG
AAAATGAGCAGTTGCGTCGTCAGTTGCAGATCAGTACCACCGATGAGCTG
TTCCGCCAGGGAGCACTGAGCTCCAGCGAAAGTAGCACTCAGATCGGACC
AAACGATTCTTTGGATTCGAGTGCCACCCGGGAGAATAGCATCTACAGCA
TAGATAGCTTCCTCTCCTGCCTTTCGCCGAGCAGCGTGGAGGATGATTCG
GAGTGCTCATCCAACAATTCGCTGCTGAGTGAGCTGGAAGTCACTTGCTT
TATTGAGGAGGCTCTGGCCGAGAAGCCCGAGGAGGCAAGCTTTCTAGACC
BO07836.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6130-PA | 771 | CG6130-RA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:41:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| h-cup-RA | 1545 | CG6130-RA | 83..850 | 17..784 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:40:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15382102..15382869 | 784..17 | 3840 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:40:56 has no hits.
BO07836.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:30 Download gff for
BO07836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6130-PA | 1..771 | 17..785 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:38 Download gff for
BO07836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6130-PA | 1..771 | 17..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:44:49 Download gff for
BO07836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| h-cup-RA | 80..850 | 13..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:55 Download gff for
BO07836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| h-cup-RA | 80..850 | 13..784 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:55 Download gff for
BO07836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15382102..15382872 | 13..784 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:44:49 Download gff for
BO07836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11207824..11208594 | 13..784 | 99 | | Minus |
BO07836.3prime Sequence
800 bp (799 high quality bases) assembled on 2006-01-06
> BO07836.3prime
ATGGTCTAGAAAGCTTGCCTCCTCGGGCTTCTCGGCCAGAGCCTCCTCAA
TAAAGCAAGTGACTTCCAGCTCACTCAGCAGCGAATTGTTGGATGAGCAC
TCCGAATCATCCTCCACGCTGCTCGGCGAAAGGCAGGAGAGGAAGCTATC
TATGCTGTAGATGCTATTCTCCCGGGTGGCACTCGAATCCAAAGAATCGT
TTGGTCCGATCTGAGTGCTACTTTCGCTGGAGCTCAGTGCTCCCTGGCGG
AACAGCTCATCGGTGGTACTGATCTGCAACTGACGACGCAACTGCTCATT
TTCATCAGTCAGCTGGCAAATGATCTGCTGGTTCTCGGCACTGCTCCGGT
CCTCGAAGTCGACAGTTAGCTTCATCACATCAACCATACGCTCGATGCGG
GCATCCTGCTCTTCGACCACCTTCGACAAACCGGCCAGGTAGTGCTCCCT
CAGTTGGTAGGTATCGATTAACATGTCCCCTTCGCTGTGCTCACGGTACT
TCTCCATGATCAGCTCAATGCCGTGTTGGAACTCAACGCCGGTCGCCTTG
AGCTCGATGTTTTCCCGCAGCAACTGCATCTGCTCGTCGTCGTCGTTCTT
CTCCGTCAGATGCTTCAGCAGCTGATCCTCGCGAAACTTGTGGCAGTTGG
CCAACTCCTGATCCACCATTTTAGCATCGATTAGCAGCTCATCGGTCTTG
AACTCCAGTTCGTCCAGGCATTTGGCAAAGTCCTTGTACTCCTTGATAAG
ACCGCTTTCGGCTCCGGATGGCACCGAGCTATCCATGTCGACTGATAACT
BO07836.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6130-PA | 771 | CG6130-RA | 1..768 | 786..19 | 3840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:31:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| h-cup-RA | 1545 | CG6130-RA | 83..850 | 786..19 | 3840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:31:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15382102..15382869 | 19..786 | 3840 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:31:55 has no hits.
BO07836.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:29 Download gff for
BO07836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6130-PA | 1..771 | 18..786 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:36 Download gff for
BO07836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6130-PA | 1..771 | 18..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:26:32 Download gff for
BO07836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| h-cup-RA | 80..850 | 19..790 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:51:04 Download gff for
BO07836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| h-cup-RA | 80..850 | 19..790 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:51:04 Download gff for
BO07836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15382102..15382872 | 19..790 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:26:32 Download gff for
BO07836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11207824..11208594 | 19..790 | 99 | | Plus |
BO07836.complete Sequence
802 bp (802 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630951
> BO07836.complete
GAAGTTATCAGTCGACATGGATAGCTCGGTGCCATCCGGAGCCGAAAGCG
GTCTTATCAAGGAGTACAAGGACTTTGCCAAATGCCTGGACGAACTGGAG
TTCAAGACCGATGAGCTGCTAATCGATGCTAAAATGGTGGATCAGGAGTT
GGCCAACTGCCACAAGTTTCGCGAGGATCAGCTGCTGAAGCATCTGACGG
AGAAGAACGACGACGACGAGCAGATGCAGTTGCTGCGGGAAAACATCGAG
CTCAAGGCGACCGGCGTTGAGTTCCAACACGGCATTGAGCTGATCATGGA
GAAGTACCGTGAGCACAGCGAAGGGGACATGTTAATCGATACCTACCAAC
TGAGGGAGCACTACCTGGCCGGTTTGTCGAAGGTGGTCGAAGAGCAGGAT
GCCCGCATCGAGCGTATGGTTGATGTGATGAAGCTAACTGTCGACTTCGA
GGACCGGAGCAGTGCCGAGAACCAGCAGATCATTTGCCAGCTGACTGATG
AAAATGAGCAGTTGCGTCGTCAGTTGCAGATCAGTACCACCGATGAGCTG
TTCCGCCAGGGAGCACTGAGCTCCAGCGAAAGTAGCACTCAGATCGGACC
AAACGATTCTTTGGATTCGAGTGCCACCCGGGAGAATAGCATCTACAGCA
TAGATAGCTTCCTCTCCTGCCTTTCGCCGAGCAGCGTGGAGGATGATTCG
GAGTGCTCATCCAACAATTCGCTGCTGAGTGAGCTGGAAGTCACTTGCTT
TATTGAGGAGGCTCTGGCCGAGAAGCCCGAGGAGGCAAGCTTTCTAGACC
AT
BO07836.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:03:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| h-cup-RA | 771 | CG6130-PA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:03:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| h-cup-RA | 1545 | CG6130-RA | 83..850 | 17..784 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:03:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15382102..15382869 | 784..17 | 3840 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:03:01 has no hits.
BO07836.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:27 Download gff for
BO07836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6130-RA | 1..771 | 17..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:03 Download gff for
BO07836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6130-RA | 80..850 | 13..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:24 Download gff for
BO07836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| h-cup-RA | 83..850 | 17..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:27 Download gff for
BO07836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6130-RA | 80..850 | 13..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:40 Download gff for
BO07836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| h-cup-RA | 83..850 | 17..786 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:40 Download gff for
BO07836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15382100..15382869 | 17..786 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:24 Download gff for
BO07836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11207822..11208591 | 17..786 | 99 | | Minus |
BO07836.pep Sequence
Translation from 16 to 802
> BO07836.pep
MDSSVPSGAESGLIKEYKDFAKCLDELEFKTDELLIDAKMVDQELANCHK
FREDQLLKHLTEKNDDDEQMQLLRENIELKATGVEFQHGIELIMEKYREH
SEGDMLIDTYQLREHYLAGLSKVVEEQDARIERMVDVMKLTVDFEDRSSA
ENQQIICQLTDENEQLRRQLQISTTDELFRQGALSSSESSTQIGPNDSLD
SSATRENSIYSIDSFLSCLSPSSVEDDSECSSNNSLLSELEVTCFIEEAL
AEKPEEASFLDH
BO07836.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| h-cup-PA | 256 | CG6130-PA | 1..256 | 1..256 | 1290 | 100 | Plus |
| Fgop2-PB | 315 | CG10158-PB | 79..225 | 71..207 | 172 | 32.4 | Plus |
| Fgop2-PA | 315 | CG10158-PA | 79..225 | 71..207 | 172 | 32.4 | Plus |
