Clone BO07839 Report

Search the DGRC for BO07839

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:78
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptPp1-13C-RA
Protein status:BO07839.pep: validated full length
Sequenced Size:940

Clone Sequence Records

BO07839.3prime Sequence

938 bp (852 high quality bases) assembled on 2006-01-06

> BO07839.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGCGCTTCTCGACAGGCTTCAGGATTT
GGAAGGAGCACATGAGTGTATTGTCCACGGACATCATGGCACCAGCATTG
TCGAATTCACCGCAATAGTTGGGGGCGGAAAACAAAGTGACCAATTGGCG
CTTGGCAAAGAACTCGTAACCATCCTCGACGACTTGATGGGCACGACAGA
TCAGATCCAGATCGTGCTTTTGGAGGAACTTGACCACAACTTCGGCGCCA
AAGGTGAAACTAACGCCACGGTCGTTCTCGCCCCACCCAATGGTGTCCTT
GTCCGGATCGGACCACAGCAGGTCACAGAGTAGTCCCTGATCGGGAACAT
CGGTGGGACGCATAATACGACGGATCTGCTCCATCGAGGTAAGATCCGGA
CTCAGTCCGCCGTGGCAGCAAAAGATCTTCTCATCCACAATGGCCACAAC
TGGCAGACAGTTGAAGCAGTCCGTGAATGTCTTCCACAACTTGATGGTAT
ATCTGCGCTTGCACTCGTCGTAGAATCCATAGATTCTATTAATGCTGGCG
CACTCGTGATTGCCGCGCAACAAAAAGAAGTTCTCCGAATACTTGATCTT
GTACGCCAACAGCAGGCAGATGGTCTCCAGCGACTGCTTGCCCCTGTCCA
CGTAATCGCCCAAGAAAAGATAGTTAGCCTCCGGCGGATAGCCGCCGTAC
TCGAACAGACGCAACAGATCATAGTACTGGCCATGGATATCGCCGCAGAT
CTTGAGCGGCGCCTCCAGCTCTAAGAGTATGGGCTGTGCCAGCAGTATTT
CGCGCGACTTGAGGCACAGGCCCCGTATCTCACCCTCCGACAGCTGGACA
TTCTTGCCAGGCCGTGCGCCACGCACCTCCACAGACGGGAAATTATGCTC
TCCAATTGAGAACCTCCGCATGTCGACTGATAACTTCG

BO07839.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9156-PA 909 Pp1-13C-RA 44..906 881..19 4315 100 Minus
CG2096-PB 993 flw-RB 284..423 644..505 350 90 Minus
CG2096-PA 1386 flw-RA 677..816 644..505 350 90 Minus
CG5650-PA 909 Pp1-87B-RA 429..515 496..410 285 93.1 Minus
CG5650-PA 909 Pp1-87B-RA 172..245 753..680 270 94.5 Minus
CG6593-PA 984 Pp1alpha-96A-RA 283..383 642..542 205 88.1 Minus
CG5650-PA 909 Pp1-87B-RA 283..387 642..538 200 87.6 Minus
CG5650-PA 909 Pp1-87B-RA 733..773 192..152 180 97.5 Minus
CG5650-PA 909 Pp1-87B-RA 802..887 123..38 180 88.3 Minus
CG8822-PA 1011 PpD6-RA 799..860 198..137 160 90.3 Minus
CG6593-PA 984 Pp1alpha-96A-RA 802..852 123..73 155 92.1 Minus
CG6593-PA 984 Pp1alpha-96A-RA 541..650 384..275 150 85.4 Minus
CG5650-PA 909 Pp1-87B-RA 535..593 390..332 145 89.8 Minus
CG5650-PA 909 Pp1-87B-RA 607..674 318..251 140 88.2 Minus
CG6593-PA 984 Pp1alpha-96A-RA 481..533 444..392 140 90.5 Minus
CG6593-PA 984 Pp1alpha-96A-RA 139..185 786..740 135 91.4 Minus
CG6593-PA 984 Pp1alpha-96A-RA 427..473 498..452 135 91.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
Pp1-13C-RA 1892 CG9156-RA 659..1561 919..19 4465 99.8 Minus
Pp1-87B-RA 2203 CG5650-RA 254..1135 899..19 2225 83.6 Minus
Pp1alpha-96A-RB 3210 CG6593-RB 433..1288 881..26 1910 81.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15359432..15360334 19..919 4415 99.8 Plus
3R 32079331 3R 12424783..12425643 19..879 2220 83.9 Plus
3R 32079331 3R 24518843..24519189 876..530 820 82.4 Minus
X 23542271 X 10406379..10406692 849..536 715 81.8 Minus
3R 32079331 3R 24519597..24519874 525..248 685 83.1 Minus
X 23542271 X 10406764..10407038 525..251 430 77.1 Minus
2R 25286936 2R 17955968..17956334 398..764 395 73.8 Plus
3R 32079331 3R 24519961..24520089 219..91 240 79.1 Minus
X 23542271 X 10407172..10407299 177..50 235 78.9 Minus
Blast to na_te.dros performed on 2015-02-12 04:34:06 has no hits.

BO07839.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:34 Download gff for BO07839.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9156-PA 1..909 18..921 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:45 Download gff for BO07839.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9156-PA 1..909 18..921 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:37:36 Download gff for BO07839.3prime
Subject Subject Range Query Range Percent Splice Strand
Pp1-13C-RA 651..1561 19..928 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:05 Download gff for BO07839.3prime
Subject Subject Range Query Range Percent Splice Strand
Pp1-13C-RA 651..1561 19..928 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:05 Download gff for BO07839.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15359433..15360342 20..928 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:37:36 Download gff for BO07839.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15253466..15254375 20..928 99   Plus

BO07839.5prime Sequence

915 bp (831 high quality bases) assembled on 2006-01-06

> BO07839.5prime
GAAGTTATCAGTCGACATGGCGGAGGTTCTCAATTTGGAGAGCATAATTT
CCCGTCTGTTGGAGGTGCGTGGCGCACGGCCTGGCAAGAATGTCCAGCTG
TCGGAGGGTGAGATACGGGGCCTGTGCCTCAAGTCGCGCGAAATACTGCT
GGCACAGCCCATACTCTTAGAGCTGGAGGCGCCGCTCAAGATCTGCGGCG
ATATCCATGGCCAGTACTATGATCTGTTGCGTCTGTTCGAGTACGGCGGC
TATCCGCCGGAGGCTAACTATCTTTTCTTGGGCGATTACGTGGACAGGGG
CAAGCAGTCGCTGGAGACCATCTGCCTGCTGTTGGCGTACAAGATCAAGT
ATTCGGAGAACTTCTTTTTGTTGCGCGGCAATCACGAGTGCGCCAGCATT
AATAGAATCTATGGATTCTACGACGAGTGCAAGCGCAGATATACCATCAA
GTTGTGGAAGACATTCACGGACTGCTTCAACTGTCTGCCAGTTGTGGCCA
TTGTGGATGAGAAGATCTTTTGCTGCCACGGCGGACTGAGTCCGGATCTT
ACCTCGATGGAGCAGATCCGTCGTATTATGCGTCCCACCGATGTTCCCGA
TCAGGGACTACTCTGTGACCTGCTGTGGTCCGATCCGGACAAGGACACCA
TTGGGTGGGGCGAGAACGACCGTGGCGTTAGTTTCACCTTTGGCGCCGAA
GTTGTGGTCAAGTTCCTCCAAAAGCACGATCTGGATCTGATCTGTCGTGC
CCATCAAGTCGTCGAGGATGGTTACGAGTTCTTTGCCAAGCGCCAATTGG
TCACTTTGTTTTCCCGCCCCCACTATTGCGGTGAATTCGACAATGCTGGT
GCCATGATGTCCGTGGACAATACACTCATGTGCTCCTTCCAAATCCTGAA
GCCTGTCGAGAAGCG

BO07839.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG9156-PA 909 Pp1-13C-RA 1..899 17..915 4420 99.6 Plus
CG2096-PB 993 flw-RB 284..423 297..436 350 90 Plus
CG2096-PA 1386 flw-RA 677..816 297..436 350 90 Plus
CG5650-PA 909 Pp1-87B-RA 429..515 445..531 285 93.1 Plus
CG5650-PA 909 Pp1-87B-RA 172..245 188..261 270 94.5 Plus
CG6593-PA 984 Pp1alpha-96A-RA 283..383 299..399 205 88.1 Plus
CG5650-PA 909 Pp1-87B-RA 283..387 299..403 200 87.6 Plus
CG5650-PA 909 Pp1-87B-RA 733..773 749..789 180 97.5 Plus
CG5650-PA 909 Pp1-87B-RA 820..887 836..903 165 89.7 Plus
CG8822-PA 1011 PpD6-RA 799..860 743..804 160 90.3 Plus
CG6593-PA 984 Pp1alpha-96A-RA 541..650 557..666 150 85.4 Plus
CG5650-PA 909 Pp1-87B-RA 535..593 551..609 145 89.8 Plus
CG5650-PA 909 Pp1-87B-RA 607..674 623..690 140 88.2 Plus
CG6593-PA 984 Pp1alpha-96A-RA 481..533 497..549 140 90.5 Plus
CG6593-PA 984 Pp1alpha-96A-RA 811..852 827..868 135 92.8 Plus
CG6593-PA 984 Pp1alpha-96A-RA 139..185 155..201 135 91.4 Plus
CG6593-PA 984 Pp1alpha-96A-RA 427..473 443..489 135 91.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:45:47
Subject Length Description Subject Range Query Range Score Percent Strand
Pp1-13C-RA 1892 CG9156-RA 655..1554 16..915 4455 99.8 Plus
Pp1-87B-RA 2203 CG5650-RA 254..1128 41..915 2185 83.4 Plus
Pp1alpha-96A-RB 3210 CG6593-RB 429..1288 56..915 1870 81.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15359439..15360338 915..16 4455 99.7 Minus
3R 32079331 3R 12424790..12425664 915..41 2185 83.3 Minus
3R 32079331 3R 24518843..24519189 65..411 820 82.4 Plus
X 23542271 X 10406379..10406692 92..405 715 81.8 Plus
3R 32079331 3R 24519597..24519874 416..693 685 83.1 Plus
X 23542271 X 10406764..10407038 416..690 430 77.1 Plus
2R 25286936 2R 17955968..17956334 543..177 395 73.8 Minus
3R 32079331 3R 24519961..24520089 722..850 195 76.7 Plus
X 23542271 X 10407172..10407299 764..891 190 76.6 Plus
Blast to na_te.dros performed on 2015-02-09 19:45:43 has no hits.

BO07839.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:35 Download gff for BO07839.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9156-PA 1..899 17..915 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:46 Download gff for BO07839.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9156-PA 1..899 17..915 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:10:55 Download gff for BO07839.5prime
Subject Subject Range Query Range Percent Splice Strand
Pp1-13C-RA 651..1554 10..915 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:21:33 Download gff for BO07839.5prime
Subject Subject Range Query Range Percent Splice Strand
Pp1-13C-RA 651..1554 10..915 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:21:33 Download gff for BO07839.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15359439..15360342 10..915 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:10:55 Download gff for BO07839.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15253472..15254375 10..915 99   Minus

BO07839.complete Sequence

940 bp (940 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630952

> BO07839.complete
GAAGTTATCAGTCGACATGGCGGAGGTTCTCAATTTGGAGAGCATAATTT
CCCGTCTGTTGGAGGTGCGTGGCGCACGGCCTGGCAAGAATGTCCAGCTG
TCGGAGGGTGAGATACGGGGCCTGTGCCTCAAGTCGCGCGAAATACTGCT
GGCACAGCCCATACTCTTAGAGCTGGAGGCGCCGCTCAAGATCTGCGGCG
ATATCCATGGCCAGTACTATGATCTGTTGCGTCTGTTCGAGTACGGCGGC
TATCCGCCGGAGGCTAACTATCTTTTCTTGGGCGATTACGTGGACAGGGG
CAAGCAGTCGCTGGAGACCATCTGCCTGCTGTTGGCGTACAAGATCAAGT
ATTCGGAGAACTTCTTTTTGTTGCGCGGCAATCACGAGTGCGCCAGCATT
AATAGAATCTATGGATTCTACGACGAGTGCAAGCGCAGATATACCATCAA
GTTGTGGAAGACATTCACGGACTGCTTCAACTGTCTGCCAGTTGTGGCCA
TTGTGGATGAGAAGATCTTTTGCTGCCACGGCGGACTGAGTCCGGATCTT
ACCTCGATGGAGCAGATCCGTCGTATTATGCGTCCCACCGATGTTCCCGA
TCAGGGACTACTCTGTGACCTGCTGTGGTCCGATCCGGACAAGGACACCA
TTGGGTGGGGCGAGAACGACCGTGGCGTTAGTTTCACCTTTGGCGCCGAA
GTTGTGGTCAAGTTCCTCCAAAAGCACGATCTGGATCTGATCTGTCGTGC
CCATCAAGTCGTCGAGGATGGTTACGAGTTCTTTGCCAAGCGCCAATTGG
TCACTTTGTTTTCCGCCCCCAACTATTGCGGTGAATTCGACAATGCTGGT
GCCATGATGTCCGTGGACAATACACTCATGTGCTCCTTCCAAATCCTGAA
GCCTGTCGAGAAGCGCAAGAAGGCAAGCTTTCTAGACCAT

BO07839.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
Pp1-13C-RA 909 CG9156-PA 1..906 17..922 4530 100 Plus
Pp1-87B-RA 909 CG5650-PA 25..906 41..922 2235 83.6 Plus
Pp1alpha-96A-RB 984 CG6593-PB 40..899 56..915 1915 81.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
Pp1-13C-RA 1892 CG9156-RA 655..1561 16..922 4535 100 Plus
Pp1-87B-RA 2203 CG5650-RA 254..1135 41..922 2235 83.6 Plus
Pp1alpha-96A-RB 3210 CG6593-RB 429..1288 56..915 1915 81.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15359432..15360338 922..16 4535 100 Minus
3R 32079331 3R 12424783..12425664 922..41 2235 83.6 Minus
3R 32079331 3R 24518843..24519189 65..411 820 82.4 Plus
X 23542271 X 10406379..10406692 92..405 715 81.8 Plus
3R 32079331 3R 24519597..24519874 416..693 685 83.1 Plus
X 23542271 X 10406764..10407038 416..690 430 77.1 Plus
2R 25286936 2R 17955968..17956334 543..177 395 73.8 Minus
Y 3667352 Y 3539716..3539871 889..734 315 80.1 Minus
2L 23513712 2L 3110485..3110603 710..828 295 83.2 Plus
2R 25286936 2R 21881560..21881659 860..761 260 84 Minus
2R 25286936 2R 22041989..22042409 830..410 245 70.5 Minus
3R 32079331 3R 24519961..24520089 722..850 240 79.1 Plus
X 23542271 X 10407172..10407299 764..891 235 78.9 Plus
Y 3667352 Y 10571..10705 734..868 225 77.8 Plus
2R 25286936 2R 21881877..21882037 543..383 220 75.8 Minus
2R 25286936 2R 17955679..17955766 832..745 215 83 Minus
Blast to na_te.dros performed on 2014-11-27 16:22:40 has no hits.

BO07839.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:28 Download gff for BO07839.complete
Subject Subject Range Query Range Percent Splice Strand
Pp1-13C-RA 1..909 17..923 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:05 Download gff for BO07839.complete
Subject Subject Range Query Range Percent Splice Strand
Pp1-13C-RA 651..1561 10..922 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:23 Download gff for BO07839.complete
Subject Subject Range Query Range Percent Splice Strand
Pp1-13C-RA 656..1561 17..924 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:28 Download gff for BO07839.complete
Subject Subject Range Query Range Percent Splice Strand
Pp1-13C-RA 651..1561 10..922 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:06 Download gff for BO07839.complete
Subject Subject Range Query Range Percent Splice Strand
Pp1-13C-RA 656..1561 17..924 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:06 Download gff for BO07839.complete
Subject Subject Range Query Range Percent Splice Strand
X 15359430..15360337 17..924 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:23 Download gff for BO07839.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15253463..15254370 17..924 99   Minus

BO07839.pep Sequence

Translation from 16 to 940

> BO07839.pep
MAEVLNLESIISRLLEVRGARPGKNVQLSEGEIRGLCLKSREILLAQPIL
LELEAPLKICGDIHGQYYDLLRLFEYGGYPPEANYLFLGDYVDRGKQSLE
TICLLLAYKIKYSENFFLLRGNHECASINRIYGFYDECKRRYTIKLWKTF
TDCFNCLPVVAIVDEKIFCCHGGLSPDLTSMEQIRRIMRPTDVPDQGLLC
DLLWSDPDKDTIGWGENDRGVSFTFGAEVVVKFLQKHDLDLICRAHQVVE
DGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDNTLMCSFQILKPVEKR
KKASFLDH

BO07839.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
Pp1-13C-PA 302 CG9156-PA 1..302 1..302 1611 100 Plus
Pp1-87B-PA 302 CG5650-PA 1..302 1..302 1543 93.7 Plus
Pp1alpha-96A-PB 327 CG6593-PB 1..301 1..301 1522 92.4 Plus
Pp1alpha-96A-PA 327 CG6593-PA 1..301 1..301 1522 92.4 Plus
flw-PC 330 CG2096-PC 6..303 5..302 1405 85.6 Plus