Clone Sequence Records
BO07839.3prime Sequence
938 bp (852 high quality bases) assembled on 2006-01-06
> BO07839.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGCGCTTCTCGACAGGCTTCAGGATTT
GGAAGGAGCACATGAGTGTATTGTCCACGGACATCATGGCACCAGCATTG
TCGAATTCACCGCAATAGTTGGGGGCGGAAAACAAAGTGACCAATTGGCG
CTTGGCAAAGAACTCGTAACCATCCTCGACGACTTGATGGGCACGACAGA
TCAGATCCAGATCGTGCTTTTGGAGGAACTTGACCACAACTTCGGCGCCA
AAGGTGAAACTAACGCCACGGTCGTTCTCGCCCCACCCAATGGTGTCCTT
GTCCGGATCGGACCACAGCAGGTCACAGAGTAGTCCCTGATCGGGAACAT
CGGTGGGACGCATAATACGACGGATCTGCTCCATCGAGGTAAGATCCGGA
CTCAGTCCGCCGTGGCAGCAAAAGATCTTCTCATCCACAATGGCCACAAC
TGGCAGACAGTTGAAGCAGTCCGTGAATGTCTTCCACAACTTGATGGTAT
ATCTGCGCTTGCACTCGTCGTAGAATCCATAGATTCTATTAATGCTGGCG
CACTCGTGATTGCCGCGCAACAAAAAGAAGTTCTCCGAATACTTGATCTT
GTACGCCAACAGCAGGCAGATGGTCTCCAGCGACTGCTTGCCCCTGTCCA
CGTAATCGCCCAAGAAAAGATAGTTAGCCTCCGGCGGATAGCCGCCGTAC
TCGAACAGACGCAACAGATCATAGTACTGGCCATGGATATCGCCGCAGAT
CTTGAGCGGCGCCTCCAGCTCTAAGAGTATGGGCTGTGCCAGCAGTATTT
CGCGCGACTTGAGGCACAGGCCCCGTATCTCACCCTCCGACAGCTGGACA
TTCTTGCCAGGCCGTGCGCCACGCACCTCCACAGACGGGAAATTATGCTC
TCCAATTGAGAACCTCCGCATGTCGACTGATAACTTCG
BO07839.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9156-PA | 909 | Pp1-13C-RA | 44..906 | 881..19 | 4315 | 100 | Minus |
CG2096-PB | 993 | flw-RB | 284..423 | 644..505 | 350 | 90 | Minus |
CG2096-PA | 1386 | flw-RA | 677..816 | 644..505 | 350 | 90 | Minus |
CG5650-PA | 909 | Pp1-87B-RA | 429..515 | 496..410 | 285 | 93.1 | Minus |
CG5650-PA | 909 | Pp1-87B-RA | 172..245 | 753..680 | 270 | 94.5 | Minus |
CG6593-PA | 984 | Pp1alpha-96A-RA | 283..383 | 642..542 | 205 | 88.1 | Minus |
CG5650-PA | 909 | Pp1-87B-RA | 283..387 | 642..538 | 200 | 87.6 | Minus |
CG5650-PA | 909 | Pp1-87B-RA | 733..773 | 192..152 | 180 | 97.5 | Minus |
CG5650-PA | 909 | Pp1-87B-RA | 802..887 | 123..38 | 180 | 88.3 | Minus |
CG8822-PA | 1011 | PpD6-RA | 799..860 | 198..137 | 160 | 90.3 | Minus |
CG6593-PA | 984 | Pp1alpha-96A-RA | 802..852 | 123..73 | 155 | 92.1 | Minus |
CG6593-PA | 984 | Pp1alpha-96A-RA | 541..650 | 384..275 | 150 | 85.4 | Minus |
CG5650-PA | 909 | Pp1-87B-RA | 535..593 | 390..332 | 145 | 89.8 | Minus |
CG5650-PA | 909 | Pp1-87B-RA | 607..674 | 318..251 | 140 | 88.2 | Minus |
CG6593-PA | 984 | Pp1alpha-96A-RA | 481..533 | 444..392 | 140 | 90.5 | Minus |
CG6593-PA | 984 | Pp1alpha-96A-RA | 139..185 | 786..740 | 135 | 91.4 | Minus |
CG6593-PA | 984 | Pp1alpha-96A-RA | 427..473 | 498..452 | 135 | 91.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:34:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pp1-13C-RA | 1892 | CG9156-RA | 659..1561 | 919..19 | 4465 | 99.8 | Minus |
Pp1-87B-RA | 2203 | CG5650-RA | 254..1135 | 899..19 | 2225 | 83.6 | Minus |
Pp1alpha-96A-RB | 3210 | CG6593-RB | 433..1288 | 881..26 | 1910 | 81.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:34:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15359432..15360334 | 19..919 | 4415 | 99.8 | Plus |
3R | 32079331 | 3R | 12424783..12425643 | 19..879 | 2220 | 83.9 | Plus |
3R | 32079331 | 3R | 24518843..24519189 | 876..530 | 820 | 82.4 | Minus |
X | 23542271 | X | 10406379..10406692 | 849..536 | 715 | 81.8 | Minus |
3R | 32079331 | 3R | 24519597..24519874 | 525..248 | 685 | 83.1 | Minus |
X | 23542271 | X | 10406764..10407038 | 525..251 | 430 | 77.1 | Minus |
2R | 25286936 | 2R | 17955968..17956334 | 398..764 | 395 | 73.8 | Plus |
3R | 32079331 | 3R | 24519961..24520089 | 219..91 | 240 | 79.1 | Minus |
X | 23542271 | X | 10407172..10407299 | 177..50 | 235 | 78.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:34:06 has no hits.
BO07839.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:34 Download gff for
BO07839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9156-PA | 1..909 | 18..921 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:45 Download gff for
BO07839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9156-PA | 1..909 | 18..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:37:36 Download gff for
BO07839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp1-13C-RA | 651..1561 | 19..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:05 Download gff for
BO07839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp1-13C-RA | 651..1561 | 19..928 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:05 Download gff for
BO07839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15359433..15360342 | 20..928 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:37:36 Download gff for
BO07839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15253466..15254375 | 20..928 | 99 | | Plus |
BO07839.5prime Sequence
915 bp (831 high quality bases) assembled on 2006-01-06
> BO07839.5prime
GAAGTTATCAGTCGACATGGCGGAGGTTCTCAATTTGGAGAGCATAATTT
CCCGTCTGTTGGAGGTGCGTGGCGCACGGCCTGGCAAGAATGTCCAGCTG
TCGGAGGGTGAGATACGGGGCCTGTGCCTCAAGTCGCGCGAAATACTGCT
GGCACAGCCCATACTCTTAGAGCTGGAGGCGCCGCTCAAGATCTGCGGCG
ATATCCATGGCCAGTACTATGATCTGTTGCGTCTGTTCGAGTACGGCGGC
TATCCGCCGGAGGCTAACTATCTTTTCTTGGGCGATTACGTGGACAGGGG
CAAGCAGTCGCTGGAGACCATCTGCCTGCTGTTGGCGTACAAGATCAAGT
ATTCGGAGAACTTCTTTTTGTTGCGCGGCAATCACGAGTGCGCCAGCATT
AATAGAATCTATGGATTCTACGACGAGTGCAAGCGCAGATATACCATCAA
GTTGTGGAAGACATTCACGGACTGCTTCAACTGTCTGCCAGTTGTGGCCA
TTGTGGATGAGAAGATCTTTTGCTGCCACGGCGGACTGAGTCCGGATCTT
ACCTCGATGGAGCAGATCCGTCGTATTATGCGTCCCACCGATGTTCCCGA
TCAGGGACTACTCTGTGACCTGCTGTGGTCCGATCCGGACAAGGACACCA
TTGGGTGGGGCGAGAACGACCGTGGCGTTAGTTTCACCTTTGGCGCCGAA
GTTGTGGTCAAGTTCCTCCAAAAGCACGATCTGGATCTGATCTGTCGTGC
CCATCAAGTCGTCGAGGATGGTTACGAGTTCTTTGCCAAGCGCCAATTGG
TCACTTTGTTTTCCCGCCCCCACTATTGCGGTGAATTCGACAATGCTGGT
GCCATGATGTCCGTGGACAATACACTCATGTGCTCCTTCCAAATCCTGAA
GCCTGTCGAGAAGCG
BO07839.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9156-PA | 909 | Pp1-13C-RA | 1..899 | 17..915 | 4420 | 99.6 | Plus |
CG2096-PB | 993 | flw-RB | 284..423 | 297..436 | 350 | 90 | Plus |
CG2096-PA | 1386 | flw-RA | 677..816 | 297..436 | 350 | 90 | Plus |
CG5650-PA | 909 | Pp1-87B-RA | 429..515 | 445..531 | 285 | 93.1 | Plus |
CG5650-PA | 909 | Pp1-87B-RA | 172..245 | 188..261 | 270 | 94.5 | Plus |
CG6593-PA | 984 | Pp1alpha-96A-RA | 283..383 | 299..399 | 205 | 88.1 | Plus |
CG5650-PA | 909 | Pp1-87B-RA | 283..387 | 299..403 | 200 | 87.6 | Plus |
CG5650-PA | 909 | Pp1-87B-RA | 733..773 | 749..789 | 180 | 97.5 | Plus |
CG5650-PA | 909 | Pp1-87B-RA | 820..887 | 836..903 | 165 | 89.7 | Plus |
CG8822-PA | 1011 | PpD6-RA | 799..860 | 743..804 | 160 | 90.3 | Plus |
CG6593-PA | 984 | Pp1alpha-96A-RA | 541..650 | 557..666 | 150 | 85.4 | Plus |
CG5650-PA | 909 | Pp1-87B-RA | 535..593 | 551..609 | 145 | 89.8 | Plus |
CG5650-PA | 909 | Pp1-87B-RA | 607..674 | 623..690 | 140 | 88.2 | Plus |
CG6593-PA | 984 | Pp1alpha-96A-RA | 481..533 | 497..549 | 140 | 90.5 | Plus |
CG6593-PA | 984 | Pp1alpha-96A-RA | 811..852 | 827..868 | 135 | 92.8 | Plus |
CG6593-PA | 984 | Pp1alpha-96A-RA | 139..185 | 155..201 | 135 | 91.4 | Plus |
CG6593-PA | 984 | Pp1alpha-96A-RA | 427..473 | 443..489 | 135 | 91.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:45:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pp1-13C-RA | 1892 | CG9156-RA | 655..1554 | 16..915 | 4455 | 99.8 | Plus |
Pp1-87B-RA | 2203 | CG5650-RA | 254..1128 | 41..915 | 2185 | 83.4 | Plus |
Pp1alpha-96A-RB | 3210 | CG6593-RB | 429..1288 | 56..915 | 1870 | 81.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:45:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15359439..15360338 | 915..16 | 4455 | 99.7 | Minus |
3R | 32079331 | 3R | 12424790..12425664 | 915..41 | 2185 | 83.3 | Minus |
3R | 32079331 | 3R | 24518843..24519189 | 65..411 | 820 | 82.4 | Plus |
X | 23542271 | X | 10406379..10406692 | 92..405 | 715 | 81.8 | Plus |
3R | 32079331 | 3R | 24519597..24519874 | 416..693 | 685 | 83.1 | Plus |
X | 23542271 | X | 10406764..10407038 | 416..690 | 430 | 77.1 | Plus |
2R | 25286936 | 2R | 17955968..17956334 | 543..177 | 395 | 73.8 | Minus |
3R | 32079331 | 3R | 24519961..24520089 | 722..850 | 195 | 76.7 | Plus |
X | 23542271 | X | 10407172..10407299 | 764..891 | 190 | 76.6 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:45:43 has no hits.
BO07839.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:35 Download gff for
BO07839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9156-PA | 1..899 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:46 Download gff for
BO07839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9156-PA | 1..899 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:10:55 Download gff for
BO07839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp1-13C-RA | 651..1554 | 10..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:21:33 Download gff for
BO07839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp1-13C-RA | 651..1554 | 10..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:21:33 Download gff for
BO07839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15359439..15360342 | 10..915 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:10:55 Download gff for
BO07839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15253472..15254375 | 10..915 | 99 | | Minus |
BO07839.complete Sequence
940 bp (940 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630952
> BO07839.complete
GAAGTTATCAGTCGACATGGCGGAGGTTCTCAATTTGGAGAGCATAATTT
CCCGTCTGTTGGAGGTGCGTGGCGCACGGCCTGGCAAGAATGTCCAGCTG
TCGGAGGGTGAGATACGGGGCCTGTGCCTCAAGTCGCGCGAAATACTGCT
GGCACAGCCCATACTCTTAGAGCTGGAGGCGCCGCTCAAGATCTGCGGCG
ATATCCATGGCCAGTACTATGATCTGTTGCGTCTGTTCGAGTACGGCGGC
TATCCGCCGGAGGCTAACTATCTTTTCTTGGGCGATTACGTGGACAGGGG
CAAGCAGTCGCTGGAGACCATCTGCCTGCTGTTGGCGTACAAGATCAAGT
ATTCGGAGAACTTCTTTTTGTTGCGCGGCAATCACGAGTGCGCCAGCATT
AATAGAATCTATGGATTCTACGACGAGTGCAAGCGCAGATATACCATCAA
GTTGTGGAAGACATTCACGGACTGCTTCAACTGTCTGCCAGTTGTGGCCA
TTGTGGATGAGAAGATCTTTTGCTGCCACGGCGGACTGAGTCCGGATCTT
ACCTCGATGGAGCAGATCCGTCGTATTATGCGTCCCACCGATGTTCCCGA
TCAGGGACTACTCTGTGACCTGCTGTGGTCCGATCCGGACAAGGACACCA
TTGGGTGGGGCGAGAACGACCGTGGCGTTAGTTTCACCTTTGGCGCCGAA
GTTGTGGTCAAGTTCCTCCAAAAGCACGATCTGGATCTGATCTGTCGTGC
CCATCAAGTCGTCGAGGATGGTTACGAGTTCTTTGCCAAGCGCCAATTGG
TCACTTTGTTTTCCGCCCCCAACTATTGCGGTGAATTCGACAATGCTGGT
GCCATGATGTCCGTGGACAATACACTCATGTGCTCCTTCCAAATCCTGAA
GCCTGTCGAGAAGCGCAAGAAGGCAAGCTTTCTAGACCAT
BO07839.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:22:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pp1-13C-RA | 909 | CG9156-PA | 1..906 | 17..922 | 4530 | 100 | Plus |
Pp1-87B-RA | 909 | CG5650-PA | 25..906 | 41..922 | 2235 | 83.6 | Plus |
Pp1alpha-96A-RB | 984 | CG6593-PB | 40..899 | 56..915 | 1915 | 81.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:22:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pp1-13C-RA | 1892 | CG9156-RA | 655..1561 | 16..922 | 4535 | 100 | Plus |
Pp1-87B-RA | 2203 | CG5650-RA | 254..1135 | 41..922 | 2235 | 83.6 | Plus |
Pp1alpha-96A-RB | 3210 | CG6593-RB | 429..1288 | 56..915 | 1915 | 81.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:22:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15359432..15360338 | 922..16 | 4535 | 100 | Minus |
3R | 32079331 | 3R | 12424783..12425664 | 922..41 | 2235 | 83.6 | Minus |
3R | 32079331 | 3R | 24518843..24519189 | 65..411 | 820 | 82.4 | Plus |
X | 23542271 | X | 10406379..10406692 | 92..405 | 715 | 81.8 | Plus |
3R | 32079331 | 3R | 24519597..24519874 | 416..693 | 685 | 83.1 | Plus |
X | 23542271 | X | 10406764..10407038 | 416..690 | 430 | 77.1 | Plus |
2R | 25286936 | 2R | 17955968..17956334 | 543..177 | 395 | 73.8 | Minus |
Y | 3667352 | Y | 3539716..3539871 | 889..734 | 315 | 80.1 | Minus |
2L | 23513712 | 2L | 3110485..3110603 | 710..828 | 295 | 83.2 | Plus |
2R | 25286936 | 2R | 21881560..21881659 | 860..761 | 260 | 84 | Minus |
2R | 25286936 | 2R | 22041989..22042409 | 830..410 | 245 | 70.5 | Minus |
3R | 32079331 | 3R | 24519961..24520089 | 722..850 | 240 | 79.1 | Plus |
X | 23542271 | X | 10407172..10407299 | 764..891 | 235 | 78.9 | Plus |
Y | 3667352 | Y | 10571..10705 | 734..868 | 225 | 77.8 | Plus |
2R | 25286936 | 2R | 21881877..21882037 | 543..383 | 220 | 75.8 | Minus |
2R | 25286936 | 2R | 17955679..17955766 | 832..745 | 215 | 83 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:22:40 has no hits.
BO07839.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:28 Download gff for
BO07839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp1-13C-RA | 1..909 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:05 Download gff for
BO07839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp1-13C-RA | 651..1561 | 10..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:23 Download gff for
BO07839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp1-13C-RA | 656..1561 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:28 Download gff for
BO07839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp1-13C-RA | 651..1561 | 10..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:06 Download gff for
BO07839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pp1-13C-RA | 656..1561 | 17..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:06 Download gff for
BO07839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15359430..15360337 | 17..924 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:23 Download gff for
BO07839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15253463..15254370 | 17..924 | 99 | | Minus |
BO07839.pep Sequence
Translation from 16 to 940
> BO07839.pep
MAEVLNLESIISRLLEVRGARPGKNVQLSEGEIRGLCLKSREILLAQPIL
LELEAPLKICGDIHGQYYDLLRLFEYGGYPPEANYLFLGDYVDRGKQSLE
TICLLLAYKIKYSENFFLLRGNHECASINRIYGFYDECKRRYTIKLWKTF
TDCFNCLPVVAIVDEKIFCCHGGLSPDLTSMEQIRRIMRPTDVPDQGLLC
DLLWSDPDKDTIGWGENDRGVSFTFGAEVVVKFLQKHDLDLICRAHQVVE
DGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDNTLMCSFQILKPVEKR
KKASFLDH
BO07839.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pp1-13C-PA | 302 | CG9156-PA | 1..302 | 1..302 | 1611 | 100 | Plus |
Pp1-87B-PA | 302 | CG5650-PA | 1..302 | 1..302 | 1543 | 93.7 | Plus |
Pp1alpha-96A-PB | 327 | CG6593-PB | 1..301 | 1..301 | 1522 | 92.4 | Plus |
Pp1alpha-96A-PA | 327 | CG6593-PA | 1..301 | 1..301 | 1522 | 92.4 | Plus |
flw-PC | 330 | CG2096-PC | 6..303 | 5..302 | 1405 | 85.6 | Plus |