Clone Sequence Records
BO07840.3prime Sequence
905 bp (840 high quality bases) assembled on 2006-01-06
> BO07840.3prime
ATGGTCTAGAAAGCTTGCGGGCACTCGAAAGTAGTTGCTGGTTGCTATGT
AGCCGCTGAAGTCCTCGTCGCAATCGTCGGACTGGGCGAATTCGATTTCC
GGCGCCGCCTCGACGGGAATGTACACAATGCTGCCGCGGGTTACCAAGAT
CTCCTTATCTCCCTGCTGGGTTTTCAATTTAAGAATGCGGGATCCCTTTA
GAACTATCAATATGGAGCCGAATGCTTGTATCTCCAGCTTGTACGACTCC
AGCGAGTGTTCGATATTCACATTTATCACTGCAAAGTCGGATACTGGCGG
AATATAGACCTGGACCTGGTCATCTATGCGGTACGGAATGAACTCCTTGC
GATCCTTATACGAACTTTCGAAGATCACAGATTCCAGCAGCTGGTCCACA
TCCTTGTACTTGGGCGTTAGGCCCGCCCGTATCACATTGTCCGAGCAAGC
CATGCACTCCACACAGTCGCCGTCCAGGTAGGCATGAATCTCGTTCGCGC
CCAAGTAGATCGCCTGGCCGGGCTGCAGGCGGATTAGGTTGAGGAAGAAC
AGGGACAGTACGCCCACATCGCCGGGGAAGTCTTTGTTGACCTTGGTGAA
CACCTCAAGCAGATCGTTGGATTTCAGTTCGTTTTGGTAATCCTTGGCTA
TTTCACTGATGCACTTGGCTATCACCGGCTCTTCGGTCTTCATCAGCTTC
TCGTAGCACAACTTAACGCTTTCCGAGTTGGTCGAGTCATGGAGCTGATC
CACAGCCTCCTTGCCAATGAGTTTACTCAGCGGCTGGAACTCATCGATGT
AGTCCCTGATATCTTCGGCTGACATAAATCCCACGAGGGCCAGAAAGGGC
GTGAGGGCAATGGCCAGTTCCGGCTTGTGATTGGGATCCTTGTAGATATC
CGGGC
BO07840.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8417-PA | 1191 | CG8417-RA | 302..1188 | 905..19 | 4435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:36:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8417-RA | 1410 | CG8417-RA | 458..1344 | 905..19 | 4435 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:36:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9760531..9761142 | 630..19 | 3060 | 100 | Minus |
| 3R | 32079331 | 3R | 9760203..9760478 | 905..630 | 1380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:36:43 has no hits.
BO07840.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:36 Download gff for
BO07840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8417-PA | 302..1191 | 15..905 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:48 Download gff for
BO07840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8417-PA | 302..1191 | 15..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:05:11 Download gff for
BO07840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8417-RA | 458..1351 | 11..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:51:00 Download gff for
BO07840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8417-RA | 458..1351 | 11..905 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:51:00 Download gff for
BO07840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9760203..9760478 | 630..905 | 100 | -> | Minus |
| 3R | 9760532..9761149 | 11..629 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:05:11 Download gff for
BO07840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5585925..5586200 | 630..905 | 100 | -> | Minus |
| arm_3R | 5586254..5586871 | 11..629 | 99 | | Minus |
BO07840.5prime Sequence
922 bp (816 high quality bases) assembled on 2006-01-06
> BO07840.5prime
GAAGTTATCAGTCGACATGGAGCTGACTGGATGGGTGAAGAACTACGGCT
GGGGCCGCAAGGGCATCAACTCGGCGGTGGCCCAGCTGGCAATGGCCAAT
GATCCGGACTTTCGTCTGAACGAGGAGGAGACCTATGCGGAAATGTGGAT
GGGCACGCATGTGTGCGGTGTGTCCGTGGTCAAGGAAACCGGAGAGACTC
TGGACCGAGTGCTAAAGAAGGACCTTTCATACCTGTTCAAGGTGCTAAGC
ATCAACAAGGCACTCAGCATCCAGGTGCATCCGAACAAGTGCGAAGCGGA
GCGCCTGCACAAGGAGCGCCCGGATATCTACAAGGATCCCAATCACAAGC
CGGAACTGGCCATTGCCCTCACGCCCTTTCTGGCCCTCGTGGGATTTATG
TCAGCCGAAGATATCAGGGACTACATCGATGAGTTCCAGCCGCTGAGTAA
ACTCATTGGCAAGGAGGCTGTGGATCAGCTCCATGACTCGACCAACTCGG
AAAGCGTTAAGTTGTGCTACGAGAAGCTGATGAAGACCGAAGAGCCGGTG
ATAGCCAAGTGCATCAGTGAAATAGCCAAGGATTACCAAAACGAACTGAA
ATCCAACGATCTGCTTGAGGTGTTCACCAAGGTCAACAAAGACTTCCCCG
GCGATGTGGGCGTACTGTCCCTGTTCTTCCTCAACCTAATCCGCCTGCAG
CCCGGCCAGGCGATCTACTTGGGCGCGAACGAGATTCATGCCTACCTGGA
CGGCGACTGTGTGGAGTGCATGGCTTGCTCGGACAATGTGATACGGGCGG
GCCTAACGCCCAAGTACAAGGATGTGGACCAGCTGCTGGAATCTGTGATC
TTCGAAAGTTCGTATAGGGATCGCAAGGAGTTCATTCCGTACCGCATAGA
TGACCAGGTCCAGGTCTATATT
BO07840.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8417-PA | 1191 | CG8417-RA | 1..906 | 17..922 | 4505 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:23:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8417-RA | 1410 | CG8417-RA | 157..1062 | 17..922 | 4515 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:23:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9759902..9760478 | 17..593 | 2885 | 100 | Plus |
| 3R | 32079331 | 3R | 9760531..9760860 | 593..922 | 1635 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:23:47 has no hits.
BO07840.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:37 Download gff for
BO07840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8417-PA | 1..906 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:49 Download gff for
BO07840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8417-PA | 1..906 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:08:26 Download gff for
BO07840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8417-RA | 152..1062 | 11..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:54:51 Download gff for
BO07840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8417-RA | 152..1062 | 11..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:54:51 Download gff for
BO07840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9759897..9760478 | 11..593 | 99 | -> | Plus |
| 3R | 9760532..9760860 | 594..922 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:08:26 Download gff for
BO07840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5585619..5586200 | 11..593 | 99 | -> | Plus |
| arm_3R | 5586254..5586582 | 594..922 | 99 | | Plus |
BO07840.complete Sequence
1222 bp assembled on 2007-10-17
GenBank Submission: FJ630953
> BO07840.complete
GAAGTTATCAGTCGACATGGAGCTGACTGGATGGGTGAAGAACTACGGCT
GGGGCCGCAAGGGCATCAACTCGGCGGTGGCCCAGCTGGCAATGGCCAAT
GATCCGGACTTTCGTCTGAACGAGGAGGAGACCTATGCGGAAATGTGGAT
GGGCACGCATGTGTGCGGTGTGTCCGTGGTCAAGGAAACCGGAGAGACTC
TGGACCGAGTGCTAAAGAAGGACCTTTCATACCTGTTCAAGGTGCTAAGC
ATCAACAAGGCACTCAGCATCCAGGTGCATCCGAACAAGTGCGAAGCGGA
GCGCCTGCACAAGGAGCGCCCGGATATCTACAAGGATCCCAATCACAAGC
CGGAACTGGCCATTGCCCTCACGCCCTTTCTGGCCCTCGTGGGATTTATG
TCAGCCGAAGATATCAGGGACTACATCGATGAGTTCCAGCCGCTGAGTAA
ACTCATTGGCAAGGAGGCTGTGGATCAGCTCCATGACTCGACCAACTCGG
AAAGCGTTAAGTTGTGCTACGAGAAGCTGATGAAGACCGAAGAGCCGGTG
ATAGCCAAGTGCATCAGTGAAATAGCCAAGGATTACCAAAACGAACTGAA
ATCCAACGATCTGCTTGAGGTGTTCACCAAGGTCAACAAAGACTTCCCCG
GCGATGTGGGCGTACTGTCCCTGTTCTTCCTCAACCTAATCCGCCTGCAG
CCCGGCCAGGCGATCTACTTGGGCGCGAACGAGATTCATGCCTACCTGGA
CGGCGACTGTGTGGAGTGCATGGCTTGCTCGGACAATGTGATACGGGCGG
GCCTAACGCCCAAGTACAAGGATGTGGACCAGCTGCTGGAATCTGTGATC
TTCGAAAGTTCGTATAAGGATCGCAAGGAGTTCATTCCGTACCGCATAGA
TGACCAGGTCCAGGTCTATATTCCGCCAGTATCCGACTTTGCAGTGATAA
ATGTGAATATCGAACACTCGCTGGAGTCGTACAAGCTGGAGATACAAGCA
TTCGGCTCCATATTGATAGTTCTAAAGGGATCCCGCATTCTTAAATTGAA
AACCCAGCAGGGAGATAAGGAGATCTTGGTAACCCGCGGCAGCATTGTGT
ACATTCCCGTCGAGGCGGCGCCGGAAATCGAATTCGCCCAGTCCGACGAT
TGCGACGAGGACTTCAGCGGCTACATAGCAACCAGCAACTACTTTCGAGT
GCCCGCAAGCTTTCTAGACCAT
BO07840.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:32:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8417-RA | 1191 | CG8417-PA | 1..1188 | 17..1204 | 5940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:32:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8417-RA | 1410 | CG8417-RA | 157..1344 | 17..1204 | 5940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:32:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9760531..9761142 | 593..1204 | 3060 | 100 | Plus |
| 3R | 32079331 | 3R | 9759902..9760478 | 17..593 | 2885 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:32:45 has no hits.
BO07840.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:24 Download gff for
BO07840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8417-RA | 1..1191 | 17..1208 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:05:39 Download gff for
BO07840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8417-RA | 177..1376 | 11..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:54:22 Download gff for
BO07840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8417-RA | 157..1344 | 17..1206 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:41 Download gff for
BO07840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8417-RA | 182..1369 | 17..1206 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:22 Download gff for
BO07840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8417-RA | 157..1344 | 17..1206 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:22 Download gff for
BO07840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9759902..9760478 | 17..593 | 100 | -> | Plus |
| 3R | 9760532..9761142 | 594..1206 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:54:22 Download gff for
BO07840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5585624..5586200 | 17..593 | 100 | -> | Plus |
| arm_3R | 5586254..5586864 | 594..1206 | 99 | | Plus |
BO07840.pep Sequence
Translation from 16 to 1222
> BO07840.pep
MELTGWVKNYGWGRKGINSAVAQLAMANDPDFRLNEEETYAEMWMGTHVC
GVSVVKETGETLDRVLKKDLSYLFKVLSINKALSIQVHPNKCEAERLHKE
RPDIYKDPNHKPELAIALTPFLALVGFMSAEDIRDYIDEFQPLSKLIGKE
AVDQLHDSTNSESVKLCYEKLMKTEEPVIAKCISEIAKDYQNELKSNDLL
EVFTKVNKDFPGDVGVLSLFFLNLIRLQPGQAIYLGANEIHAYLDGDCVE
CMACSDNVIRAGLTPKYKDVDQLLESVIFESSYKDRKEFIPYRIDDQVQV
YIPPVSDFAVINVNIEHSLESYKLEIQAFGSILIVLKGSRILKLKTQQGD
KEILVTRGSIVYIPVEAAPEIEFAQSDDCDEDFSGYIATSNYFRVPASFL
DH
BO07840.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8417-PA | 396 | CG8417-PA | 1..396 | 1..396 | 2050 | 100 | Plus |
