Clone BO07841 Report

Search the DGRC for BO07841

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:78
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG31920-RB
Protein status:BO07841.pep: validated full length
Sequenced Size:1255

Clone Sequence Records

BO07841.3prime Sequence

933 bp (828 high quality bases) assembled on 2006-01-06

> BO07841.3prime
ATGGTCTAGAAAGCTTGCCTCTTTAGTCGCTCCTTGGGTAGCTGGTTCTT
GGGGTTTGTCAATAGAATCAATGCCAGATGGGAGAGAGCATTCTTCGCTG
ATTTTACCATCGCATTCATCCGTCCTTGTCATAATGGGCTTTACTTCGCA
GGATTCTCCTCCCTTCTTCCTTGAGCAGCAGCATTTACCGCAGCAACCAC
AAACTTCATCTCCTCCGGCGCCATCCGGAACGAACTCGCTGCAACCCTGT
GCAGGTGGATCTTTGGGATCCCTGCAGCACTTCTCCAGCGCTTCGCAGAG
ATCATTCTTTCCATTTGGGTCTTGAACGAAACAAGTTACCAGCGATTTGT
ACAGTTCATCGTAGTTGCGGGGCTCCGGTTGTTTAAAGGCCTTTTGGTTC
GCCATCTCGCGTTGGAATGCCTCGTTGTCGGGCCGGGGATCCATCTTGTA
CTTTGCCCACTCGTAATCGGTGCACTTGCTCTCTGCCTCGCCGCATTTCG
GGGGGCAGTACCAATGCTTACGTCTGAGGCCATGTTTGGGAGGCTTTTCC
GGCTTCGCCATGTCCATCGCCTGTTCTATGCTGATCGCTGGATAGACGGC
GCTATCGTCAAAAGGATTGCTCGGATCCGCTGGCTGAGGACAGTGAAGCC
AGGAGAAGACATTGTTCGACTTCAGTTGGCGTTTTATGTTTGGCATCCTT
TCGAGCTTGGCCTTCAGACATTTTCGATTTAAAACAAAAGCGCCAGGCTG
GGGGGGCTTCTTCTGAAGTTGCCATTTAGGCTTTATGTTGGACTTCTTCG
GCGGTTTTGGAGCAAGACTAGCCGCCTTTAGGCTCTTTTTCAAAGCGCGG
TCATAGAGGACGGCCTGTGGAGACGGGTACTGCGATTTAACGCCATACCA
CACCAAGGATTCCTTTTGGGGACTGTAGTTCCA

BO07841.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG31920-PB 1224 CG31920-RB 307..1221 933..19 4575 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG43755-RD 1709 CG43755-RD 443..1357 933..19 4575 100 Minus
CG43755-RB 2333 CG43755-RB 443..1169 933..207 3635 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:45:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 328593..329319 207..933 3635 100 Plus
2L 23513712 2L 325874..326062 19..207 945 100 Plus
Blast to na_te.dros performed on 2015-02-09 19:45:56 has no hits.

BO07841.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:38 Download gff for BO07841.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31920-PB 308..1224 18..932 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:50 Download gff for BO07841.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31920-PB 308..1224 18..932 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:10:56 Download gff for BO07841.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43755-RD 444..1357 19..932 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:21:35 Download gff for BO07841.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43755-RD 444..1357 19..932 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:21:35 Download gff for BO07841.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 325874..326061 19..206 100 <- Plus
2L 328593..329318 207..932 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:10:56 Download gff for BO07841.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 325874..326061 19..206 100 <- Plus
arm_2L 328593..329318 207..932 100   Plus

BO07841.5prime Sequence

817 bp (716 high quality bases) assembled on 2006-01-06

> BO07841.5prime
GAAGTTATCAGTCGACATGATGGGCACACGGGCTGCGGAGCCCCGAGGAT
CCAGGAGGTCCTTGGCAGGTCAAAGCATTCAAGAGCTCTCTGTGTGCCAG
GAACCCGACCCGCTAAACACCTTTTTGGAGAAACCACTTACCCTGTATCA
GTGGATGCGGTGGCGCAACTGCAAGACCCATAAGCCGCACCTAGAGGAAA
CATACCCCAGCATTCTACCGCCTATATCCAAATGTGACGATGCCAAGACT
CTGAAGTACGTTGAAAATGCCATGGAGGCCAACAAATGTAAAGAATACGT
CAAGGAAGACGTGCTGACCGTGTGGAACTACAGTCCCCAAAAGGAATCCT
TGGTGTGGTATGGCGTTAAATCGCAGTACCCGTCTCCACAGGCCGTCCTC
TATGACCGCGCTTTGAAAAAGAGCCTAAAGGCGGCTAGTCTTGCTCCAAA
ACCGCCGAAGAAGTCCAACATAAAGCCTAAATGGCAACTTCAGAAGAAGC
CCCCCCAGCCTGGCGCTTTTGTTTTAAATCGAAAATGTCTGAAGGCCAAG
CTCGAAAGGATGCCAAACATAAAACGCCAACTGAAGTCGAACAATGTCTT
CTCCTGGCTTCACTGTCCTCAGCCAGCGGATCCGAGCAATCCTTTTGACG
ATAGCGCCGTCTATCCAGCGATCAGCATAGAACAGGCGATGGACATGGCG
AAGCCGGAAAAGCCTCCCAAACATGGCCTCAGACGTAAGCATTGGTACTG
CCCCCCGAAATGCGGCGAGGCAGAGAGCAAGTGCACCGATTACGAGTGGG
CAAAGTACAAGATGGAT

BO07841.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG31920-PB 1224 CG31920-RB 1..801 17..817 4005 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:59:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG43755-RB 2333 CG43755-RB 137..937 17..817 4005 100 Plus
CG43755-RD 1709 CG43755-RD 137..937 17..817 4005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 328825..329625 817..17 4005 100 Minus
Blast to na_te.dros performed 2015-02-13 06:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 3547..3622 228..303 119 61.8 Plus

BO07841.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:39 Download gff for BO07841.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31920-PB 1..801 17..817 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:51 Download gff for BO07841.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31920-PB 1..801 17..817 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:08:24 Download gff for BO07841.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43755-RD 137..937 17..817 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:32:15 Download gff for BO07841.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43755-RD 137..937 17..817 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:32:15 Download gff for BO07841.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 328825..329625 17..817 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:08:24 Download gff for BO07841.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 328825..329625 17..817 100   Minus

BO07841.complete Sequence

1255 bp (1255 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630954

> BO07841.complete
GAAGTTATCAGTCGACATGATGGGCACACGGGCTGCGGAGCCCCGAGGAT
CCAGGAGGTCCTTGGCAGGTCAAAGCATTCAAGAGCTCTCTGTGTGCCAG
GAACCCGACCCGCTAAACACCTTTTTGGAGAAACCACTTACCCTGTATCA
GTGGATGCGGTGGCGCAACTGCAAGACCCATAAGCCGCACCTAGAGGAAA
CATACCCCAGCATTCTACCGCCTATATCCAAATGTGACGATGCCAAGACT
CTGAAGTACGTTGAAAATGCCATGGAGGCCAACAAATGTAAAGAATACGT
CAAGGAAGACGTGCTGACCGTGTGGAACTACAGTCCCCAAAAGGAATCCT
TGGTGTGGTATGGCGTTAAATCGCAGTACCCGTCTCCACAGGCCGTCCTC
TATGACCGCGCTTTGAAAAAGAGCCTAAAGGCGGCTAGTCTTGCTCCAAA
ACCGCCGAAGAAGTCCAACATAAAGCCTAAATGGCAACTTCAGAAGAAGC
CCCCCCAGCCTGGCGCTTTTGTTTTAAATCGAAAATGTCTGAAGGCCAAG
CTCGAAAGGATGCCAAACATAAAACGCCAACTGAAGTCGAACAATGTCTT
CTCCTGGCTTCACTGTCCTCAGCCAGCGGATCCGAGCAATCCTTTTGACG
ATAGCGCCGTCTATCCAGCGATCAGCATAGAACAGGCGATGGACATGGCG
AAGCCGGAAAAGCCTCCCAAACATGGCCTCAGACGTAAGCATTGGTACTG
CCCCCCGAAATGCGGCGAGGCAGAGAGCAAGTGCACCGATTACGAGTGGG
CAAAGTACAAGATGGATCCCCGGCCCGACAACGAGGCATTCCAACGCGAG
ATGGCGAACCAAAAGGCCTTTAAACAACCGGAGCCCCGCAACTACGATGA
ACTGTACAAATCGCTGGTAACTTGTTTCGTTCAAGACCCAAATGGAAAGA
ATGATCTCTGCGAAGCGCTGGAGAAGTGCTGCAGGGATCCCAAAGATCCA
CCTGCACAGGGTTGCAGCGAGTTCGTTCCGGATGGCGCCGGAGGAGATGA
AGTTTGTGGTTGCTGCGGTAAATGCTGCTGCTCAAGGAAGAAGGGAGGAG
AATCCTGCGAAGTAAAGCCCATTATGACAAGGACGGATGAATGCGATGGT
AAAATCAGCGAAGAATGCTCTCTCCCATCTGGCATTGATTCTATTGACAA
ACCCCAAGAACCAGCTACCCAAGGAGCGACTAAAGAGGCAAGCTTTCTAG
ACCAT

BO07841.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG43755-RD 1224 CG43755-PD 1..1221 17..1237 6105 100 Plus
CG43755-RB 2049 CG43755-PB 1..1030 20..1049 5150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG43755-RD 1709 CG43755-RD 137..1357 17..1237 6105 100 Plus
CG43755-RB 2333 CG43755-RB 137..1169 17..1049 5165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:47:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 328593..329625 1049..17 5165 100 Minus
2L 23513712 2L 325874..326062 1237..1049 945 100 Minus
Blast to na_te.dros performed 2014-11-26 15:47:37
Subject Length Description Subject Range Query Range Score Percent Strand
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 3547..3622 228..303 119 61.8 Plus

BO07841.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:31 Download gff for BO07841.complete
Subject Subject Range Query Range Percent Splice Strand
CG31920-RB 1..1224 17..1238 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:06 Download gff for BO07841.complete
Subject Subject Range Query Range Percent Splice Strand
CG31920-RB 137..1357 17..1237 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:39 Download gff for BO07841.complete
Subject Subject Range Query Range Percent Splice Strand
CG43755-RD 137..1357 17..1239 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:32 Download gff for BO07841.complete
Subject Subject Range Query Range Percent Splice Strand
CG31920-RB 137..1357 17..1237 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:50 Download gff for BO07841.complete
Subject Subject Range Query Range Percent Splice Strand
CG43755-RD 137..1357 17..1239 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:50 Download gff for BO07841.complete
Subject Subject Range Query Range Percent Splice Strand
2L 325872..326061 1050..1239 98 <- Minus
2L 328593..329625 17..1049 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:39 Download gff for BO07841.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 325872..326061 1050..1239 98 <- Minus
arm_2L 328593..329625 17..1049 100   Minus

BO07841.pep Sequence

Translation from 16 to 1255

> BO07841.pep
MMGTRAAEPRGSRRSLAGQSIQELSVCQEPDPLNTFLEKPLTLYQWMRWR
NCKTHKPHLEETYPSILPPISKCDDAKTLKYVENAMEANKCKEYVKEDVL
TVWNYSPQKESLVWYGVKSQYPSPQAVLYDRALKKSLKAASLAPKPPKKS
NIKPKWQLQKKPPQPGAFVLNRKCLKAKLERMPNIKRQLKSNNVFSWLHC
PQPADPSNPFDDSAVYPAISIEQAMDMAKPEKPPKHGLRRKHWYCPPKCG
EAESKCTDYEWAKYKMDPRPDNEAFQREMANQKAFKQPEPRNYDELYKSL
VTCFVQDPNGKNDLCEALEKCCRDPKDPPAQGCSEFVPDGAGGDEVCGCC
GKCCCSRKKGGESCEVKPIMTRTDECDGKISEECSLPSGIDSIDKPQEPA
TQGATKEASFLDH

BO07841.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG43755-PD 407 CG43755-PD 1..407 1..407 2259 100 Plus
CG43755-PB 682 CG43755-PB 1..343 2..344 1899 100 Plus
CG31921-PA 713 CG31921-PA 34..340 42..343 599 40.5 Plus
CG31797-PA 868 CG31797-PA 35..330 61..340 407 34.3 Plus