Clone Sequence Records
BO07841.3prime Sequence
933 bp (828 high quality bases) assembled on 2006-01-06
> BO07841.3prime
ATGGTCTAGAAAGCTTGCCTCTTTAGTCGCTCCTTGGGTAGCTGGTTCTT
GGGGTTTGTCAATAGAATCAATGCCAGATGGGAGAGAGCATTCTTCGCTG
ATTTTACCATCGCATTCATCCGTCCTTGTCATAATGGGCTTTACTTCGCA
GGATTCTCCTCCCTTCTTCCTTGAGCAGCAGCATTTACCGCAGCAACCAC
AAACTTCATCTCCTCCGGCGCCATCCGGAACGAACTCGCTGCAACCCTGT
GCAGGTGGATCTTTGGGATCCCTGCAGCACTTCTCCAGCGCTTCGCAGAG
ATCATTCTTTCCATTTGGGTCTTGAACGAAACAAGTTACCAGCGATTTGT
ACAGTTCATCGTAGTTGCGGGGCTCCGGTTGTTTAAAGGCCTTTTGGTTC
GCCATCTCGCGTTGGAATGCCTCGTTGTCGGGCCGGGGATCCATCTTGTA
CTTTGCCCACTCGTAATCGGTGCACTTGCTCTCTGCCTCGCCGCATTTCG
GGGGGCAGTACCAATGCTTACGTCTGAGGCCATGTTTGGGAGGCTTTTCC
GGCTTCGCCATGTCCATCGCCTGTTCTATGCTGATCGCTGGATAGACGGC
GCTATCGTCAAAAGGATTGCTCGGATCCGCTGGCTGAGGACAGTGAAGCC
AGGAGAAGACATTGTTCGACTTCAGTTGGCGTTTTATGTTTGGCATCCTT
TCGAGCTTGGCCTTCAGACATTTTCGATTTAAAACAAAAGCGCCAGGCTG
GGGGGGCTTCTTCTGAAGTTGCCATTTAGGCTTTATGTTGGACTTCTTCG
GCGGTTTTGGAGCAAGACTAGCCGCCTTTAGGCTCTTTTTCAAAGCGCGG
TCATAGAGGACGGCCTGTGGAGACGGGTACTGCGATTTAACGCCATACCA
CACCAAGGATTCCTTTTGGGGACTGTAGTTCCA
BO07841.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31920-PB | 1224 | CG31920-RB | 307..1221 | 933..19 | 4575 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:46:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43755-RD | 1709 | CG43755-RD | 443..1357 | 933..19 | 4575 | 100 | Minus |
CG43755-RB | 2333 | CG43755-RB | 443..1169 | 933..207 | 3635 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:45:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 328593..329319 | 207..933 | 3635 | 100 | Plus |
2L | 23513712 | 2L | 325874..326062 | 19..207 | 945 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:45:56 has no hits.
BO07841.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:38 Download gff for
BO07841.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31920-PB | 308..1224 | 18..932 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:50 Download gff for
BO07841.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31920-PB | 308..1224 | 18..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:10:56 Download gff for
BO07841.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43755-RD | 444..1357 | 19..932 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:21:35 Download gff for
BO07841.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43755-RD | 444..1357 | 19..932 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:21:35 Download gff for
BO07841.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 325874..326061 | 19..206 | 100 | <- | Plus |
2L | 328593..329318 | 207..932 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:10:56 Download gff for
BO07841.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 325874..326061 | 19..206 | 100 | <- | Plus |
arm_2L | 328593..329318 | 207..932 | 100 | | Plus |
BO07841.5prime Sequence
817 bp (716 high quality bases) assembled on 2006-01-06
> BO07841.5prime
GAAGTTATCAGTCGACATGATGGGCACACGGGCTGCGGAGCCCCGAGGAT
CCAGGAGGTCCTTGGCAGGTCAAAGCATTCAAGAGCTCTCTGTGTGCCAG
GAACCCGACCCGCTAAACACCTTTTTGGAGAAACCACTTACCCTGTATCA
GTGGATGCGGTGGCGCAACTGCAAGACCCATAAGCCGCACCTAGAGGAAA
CATACCCCAGCATTCTACCGCCTATATCCAAATGTGACGATGCCAAGACT
CTGAAGTACGTTGAAAATGCCATGGAGGCCAACAAATGTAAAGAATACGT
CAAGGAAGACGTGCTGACCGTGTGGAACTACAGTCCCCAAAAGGAATCCT
TGGTGTGGTATGGCGTTAAATCGCAGTACCCGTCTCCACAGGCCGTCCTC
TATGACCGCGCTTTGAAAAAGAGCCTAAAGGCGGCTAGTCTTGCTCCAAA
ACCGCCGAAGAAGTCCAACATAAAGCCTAAATGGCAACTTCAGAAGAAGC
CCCCCCAGCCTGGCGCTTTTGTTTTAAATCGAAAATGTCTGAAGGCCAAG
CTCGAAAGGATGCCAAACATAAAACGCCAACTGAAGTCGAACAATGTCTT
CTCCTGGCTTCACTGTCCTCAGCCAGCGGATCCGAGCAATCCTTTTGACG
ATAGCGCCGTCTATCCAGCGATCAGCATAGAACAGGCGATGGACATGGCG
AAGCCGGAAAAGCCTCCCAAACATGGCCTCAGACGTAAGCATTGGTACTG
CCCCCCGAAATGCGGCGAGGCAGAGAGCAAGTGCACCGATTACGAGTGGG
CAAAGTACAAGATGGAT
BO07841.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31920-PB | 1224 | CG31920-RB | 1..801 | 17..817 | 4005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:59:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43755-RB | 2333 | CG43755-RB | 137..937 | 17..817 | 4005 | 100 | Plus |
CG43755-RD | 1709 | CG43755-RD | 137..937 | 17..817 | 4005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:59:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 328825..329625 | 817..17 | 4005 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 06:59:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 3547..3622 | 228..303 | 119 | 61.8 | Plus |
BO07841.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:39 Download gff for
BO07841.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31920-PB | 1..801 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:51 Download gff for
BO07841.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31920-PB | 1..801 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:08:24 Download gff for
BO07841.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43755-RD | 137..937 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:32:15 Download gff for
BO07841.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43755-RD | 137..937 | 17..817 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:32:15 Download gff for
BO07841.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 328825..329625 | 17..817 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:08:24 Download gff for
BO07841.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 328825..329625 | 17..817 | 100 | | Minus |
BO07841.complete Sequence
1255 bp (1255 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630954
> BO07841.complete
GAAGTTATCAGTCGACATGATGGGCACACGGGCTGCGGAGCCCCGAGGAT
CCAGGAGGTCCTTGGCAGGTCAAAGCATTCAAGAGCTCTCTGTGTGCCAG
GAACCCGACCCGCTAAACACCTTTTTGGAGAAACCACTTACCCTGTATCA
GTGGATGCGGTGGCGCAACTGCAAGACCCATAAGCCGCACCTAGAGGAAA
CATACCCCAGCATTCTACCGCCTATATCCAAATGTGACGATGCCAAGACT
CTGAAGTACGTTGAAAATGCCATGGAGGCCAACAAATGTAAAGAATACGT
CAAGGAAGACGTGCTGACCGTGTGGAACTACAGTCCCCAAAAGGAATCCT
TGGTGTGGTATGGCGTTAAATCGCAGTACCCGTCTCCACAGGCCGTCCTC
TATGACCGCGCTTTGAAAAAGAGCCTAAAGGCGGCTAGTCTTGCTCCAAA
ACCGCCGAAGAAGTCCAACATAAAGCCTAAATGGCAACTTCAGAAGAAGC
CCCCCCAGCCTGGCGCTTTTGTTTTAAATCGAAAATGTCTGAAGGCCAAG
CTCGAAAGGATGCCAAACATAAAACGCCAACTGAAGTCGAACAATGTCTT
CTCCTGGCTTCACTGTCCTCAGCCAGCGGATCCGAGCAATCCTTTTGACG
ATAGCGCCGTCTATCCAGCGATCAGCATAGAACAGGCGATGGACATGGCG
AAGCCGGAAAAGCCTCCCAAACATGGCCTCAGACGTAAGCATTGGTACTG
CCCCCCGAAATGCGGCGAGGCAGAGAGCAAGTGCACCGATTACGAGTGGG
CAAAGTACAAGATGGATCCCCGGCCCGACAACGAGGCATTCCAACGCGAG
ATGGCGAACCAAAAGGCCTTTAAACAACCGGAGCCCCGCAACTACGATGA
ACTGTACAAATCGCTGGTAACTTGTTTCGTTCAAGACCCAAATGGAAAGA
ATGATCTCTGCGAAGCGCTGGAGAAGTGCTGCAGGGATCCCAAAGATCCA
CCTGCACAGGGTTGCAGCGAGTTCGTTCCGGATGGCGCCGGAGGAGATGA
AGTTTGTGGTTGCTGCGGTAAATGCTGCTGCTCAAGGAAGAAGGGAGGAG
AATCCTGCGAAGTAAAGCCCATTATGACAAGGACGGATGAATGCGATGGT
AAAATCAGCGAAGAATGCTCTCTCCCATCTGGCATTGATTCTATTGACAA
ACCCCAAGAACCAGCTACCCAAGGAGCGACTAAAGAGGCAAGCTTTCTAG
ACCAT
BO07841.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:47:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43755-RD | 1224 | CG43755-PD | 1..1221 | 17..1237 | 6105 | 100 | Plus |
CG43755-RB | 2049 | CG43755-PB | 1..1030 | 20..1049 | 5150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:47:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43755-RD | 1709 | CG43755-RD | 137..1357 | 17..1237 | 6105 | 100 | Plus |
CG43755-RB | 2333 | CG43755-RB | 137..1169 | 17..1049 | 5165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:47:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 328593..329625 | 1049..17 | 5165 | 100 | Minus |
2L | 23513712 | 2L | 325874..326062 | 1237..1049 | 945 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:47:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 3547..3622 | 228..303 | 119 | 61.8 | Plus |
BO07841.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:31 Download gff for
BO07841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31920-RB | 1..1224 | 17..1238 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:06 Download gff for
BO07841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31920-RB | 137..1357 | 17..1237 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:39 Download gff for
BO07841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43755-RD | 137..1357 | 17..1239 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:32 Download gff for
BO07841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31920-RB | 137..1357 | 17..1237 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:50 Download gff for
BO07841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43755-RD | 137..1357 | 17..1239 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:50 Download gff for
BO07841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 325872..326061 | 1050..1239 | 98 | <- | Minus |
2L | 328593..329625 | 17..1049 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:39 Download gff for
BO07841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 325872..326061 | 1050..1239 | 98 | <- | Minus |
arm_2L | 328593..329625 | 17..1049 | 100 | | Minus |
BO07841.pep Sequence
Translation from 16 to 1255
> BO07841.pep
MMGTRAAEPRGSRRSLAGQSIQELSVCQEPDPLNTFLEKPLTLYQWMRWR
NCKTHKPHLEETYPSILPPISKCDDAKTLKYVENAMEANKCKEYVKEDVL
TVWNYSPQKESLVWYGVKSQYPSPQAVLYDRALKKSLKAASLAPKPPKKS
NIKPKWQLQKKPPQPGAFVLNRKCLKAKLERMPNIKRQLKSNNVFSWLHC
PQPADPSNPFDDSAVYPAISIEQAMDMAKPEKPPKHGLRRKHWYCPPKCG
EAESKCTDYEWAKYKMDPRPDNEAFQREMANQKAFKQPEPRNYDELYKSL
VTCFVQDPNGKNDLCEALEKCCRDPKDPPAQGCSEFVPDGAGGDEVCGCC
GKCCCSRKKGGESCEVKPIMTRTDECDGKISEECSLPSGIDSIDKPQEPA
TQGATKEASFLDH
BO07841.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43755-PD | 407 | CG43755-PD | 1..407 | 1..407 | 2259 | 100 | Plus |
CG43755-PB | 682 | CG43755-PB | 1..343 | 2..344 | 1899 | 100 | Plus |
CG31921-PA | 713 | CG31921-PA | 34..340 | 42..343 | 599 | 40.5 | Plus |
CG31797-PA | 868 | CG31797-PA | 35..330 | 61..340 | 407 | 34.3 | Plus |