Clone Sequence Records
BO07842.3prime Sequence
959 bp (746 high quality bases) assembled on 2006-01-06
> BO07842.3prime
ATGGTCTAGAAAGCTTGCGTGCGTGAACTGACGCAGGGTGTTGTTGTTCT
GCTGCTGCTTCTGAGAGGCGGACTTCTGCTGGAAGGATCTGCGTCCTGTG
GTGGCACACAGTCCATTCCGCAGGGGCAAAGCTGGTGGCATCGGTGGCGG
CGTGGGCGTCTTGCTGCGACCCAGTTGCTCCAACGGCATCGAGTAGTGGG
TATTGCTGTAGATGTAGTTGTGGTCCAGGATCTCGCTGCCCATCTCCTGA
TCGTATAGCTCACGCTGCTTGAAGTGCTCTTGGGTCAGTCGCAGTTGCGG
CTGATTCGGTCCACCCAACGGGGCGCCATGCACCATGGGCACATCCGCGT
ATGAGTAGCAGGAATCACCAACTGTAGCCGTGGCCGAGAGGAACTGCGGC
TTGGTATAGTGGTTCAGCTGGGGATTCTGCTGATGCACATCCCGACCCAT
GGTGGCCGACTTCATGTGCAGCACAAATGAGGCACTGTCGTCGATGGCTC
CCTGTGAAACCAGGGCCTTGTTGTTATTCAGCTTCTTCTCACTGATCATT
GTGGCGGTGGGCACTACCAACTGTTGGAACTTCTGCTGGGGATCGATGGC
GCCCAGGTCATTGACAGGCATCGGGCACATTCCATAGTGATGGGTAGCTC
CGGGATGATGAGGTGCGGTATAGGTGTTGGGGAACGTGGAGTGGATGCCC
AGGGAGCAGGGATGATGCTGATGGCGCGACATGTAGTCCTCGTCGCAGAA
GGTCTTCTGGTATTCCCGTTCCTTACGGCCCAGAGCCGAGTTACCCCACA
GACCGCCCTTGATGGTTTCGCGGATCTTATGACGGCAGCGGTACAGAACC
AAAGCCAAAGCGGTAATCGTGGCAGCAGATCCCACCANGAGAGCTCCAAT
CAAGGGCTGCTTGCGAGGATCGGCATGTGTGCATCCCATCATAGCAGGAT
CAAATGGCG
BO07842.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11280-PA | 2214 | trn-RA | 1280..2211 | 950..19 | 4591 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:59:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trn-RB | 3365 | CG11280-RB | 1855..2796 | 959..19 | 4644 | 99.6 | Minus |
| trn-RA | 3365 | CG11280-RA | 1855..2796 | 959..19 | 4644 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:59:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13116577..13117508 | 950..19 | 4619 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:59:15 has no hits.
BO07842.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:40 Download gff for
BO07842.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trn-PA | 1270..2214 | 16..959 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:53 Download gff for
BO07842.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11280-PA | 1270..2214 | 16..959 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:23:36 Download gff for
BO07842.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trn-RA | 1855..2803 | 12..959 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:24:19 Download gff for
BO07842.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trn-RA | 1855..2803 | 12..959 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:24:19 Download gff for
BO07842.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13116567..13117515 | 12..959 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:23:36 Download gff for
BO07842.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13109667..13110615 | 12..959 | 99 | | Minus |
BO07842.5prime Sequence
942 bp (848 high quality bases) assembled on 2006-01-06
> BO07842.5prime
GAAGTTATCAGTCGACATGCAGCGAAACATGATGATCGCCTTCGTGGGCA
TCTGGTGCATTTTGGCCAGCATTGGTGTGGAGCCTGCGGCGGGCTTGGCC
AATTGCCCGCCCGGCTGTCAGTGCGATGATAATACCCTGGTGGTACAATG
TGGCGAGGGCCAGCTGGACGTGCTGCCCATTGCTCTGAATCCATCCATCC
AGCGACTGGTGATTAAGAGCAACAAGATCAAGACCATCGACTCGTCCATC
CAGTTCTACGCGGAGCTGACCTTCCTCGATCTGTCCTCGAATCACCTGAT
GACCATTCCGCAGCGCACCTTCGCCTATCAGAAGAAGCTGCAGGAGGTGC
ATCTGAATCACAACAAGATTGGGCAGATCAGCAATAAGACCTTCATTGGT
CTGTCGGCAGTTACTGTTCTGAATCTGCGTGGTAACCAAATCTCGGAACT
TCACCAGGGCACCTTTACTCCTCTCCTGAAGATCGAGGAGCTGAATCTGG
GCGAGAATCGCATCGGCTATCTGGATCCCAAGGCTTTCGATGGACTCTCC
CAGTTGCGCATCCTTTATCTGGATGATAATGCCTTGACCACCGTTCCCGA
TCCCGTGATCTTCCAAGCCATGCCCAGTCTGGCTGAGCTGTTCCTTGGAA
TGAACACCCTGCAGAGCATTCAGGCTGATGCCTTCCAGGACCTGAAAGGA
CTTACTCGCCTGGAACTCAAGGGTGCCAGTCTACGCAACATCTCCCACGA
CAGCTTCCTCGGCTTGCAGGAGTTGCGCATTCTTGATCTTTCCGATAATC
GTCTGGATCGCATTCCCTCCGTGGGTCTCAGCAAGCTGGTTCGTCTGGAG
CAGCTGTCCCTGGGTCAAAACGATTTCGAGGTGATCAGCGAAGGCGCATT
CATGGGCCTGAAGCCACTTAACGCCTGGAGGTGAATGGAGCT
BO07842.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11280-PA | 2214 | trn-RA | 1..905 | 17..921 | 4500 | 99.8 | Plus |
| CG11282-PA | 1623 | caps-RA | 175..248 | 152..225 | 145 | 87.8 | Plus |
| CG11282-PB | 1623 | caps-RB | 175..248 | 152..225 | 145 | 87.8 | Plus |
| CG11282-PC | 2247 | caps-RC | 175..248 | 152..225 | 145 | 87.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:24:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trn-RB | 3365 | CG11280-RB | 586..1512 | 17..942 | 4595 | 99.8 | Plus |
| trn-RA | 3365 | CG11280-RA | 586..1512 | 17..942 | 4595 | 99.8 | Plus |
| caps-RE | 4841 | CG11282-RE | 1001..1424 | 91..514 | 545 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:24:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13115298..13116224 | 17..942 | 4570 | 99.8 | Plus |
| 3L | 28110227 | 3L | 13275802..13276225 | 91..514 | 545 | 75.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:24:05 has no hits.
BO07842.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:41 Download gff for
BO07842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trn-PA | 1..927 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:54 Download gff for
BO07842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11280-PA | 1..927 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:08:29 Download gff for
BO07842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trn-RA | 586..1512 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:55:51 Download gff for
BO07842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trn-RA | 586..1512 | 17..942 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:55:51 Download gff for
BO07842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13115298..13116224 | 17..942 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:08:29 Download gff for
BO07842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13108398..13109324 | 17..942 | 99 | | Plus |
BO07842.complete Sequence
2245 bp (2245 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630955
> BO07842.complete
GAAGTTATCAGTCGACATGCAGCGAAACATGATGATCGCCTTCGTGGGCA
TCTGGTGCATTTTGGCCAGCATTGGTGTGGAGCCTGCGGCGGGCTTGGCC
AATTGCCCGCCCGGCTGTCAGTGCGATGATAATACCCTGGTGGTACAATG
TGGCGAGGGCCAGCTGGACGTGCTGCCCATTGCTCTGAATCCATCCATCC
AGCGACTGGTGATTAAGAGCAACAAGATCAAGACCATCGACTCGTCCATC
CAGTTCTACGCGGAGCTGACCTTCCTCGATCTGTCCTCGAATCACCTGAT
GACCATTCCGCAGCGCACCTTCGCCTATCAGAAGAAGCTGCAGGAGGTGC
ATCTGAATCACAACAAGATTGGGCAGATCAGCAATAAGACCTTCATTGGT
CTGTCGGCAGTTACTGTTCTGAATCTGCGTGGTAACCAAATCTCGGAACT
TCACCAGGGCACCTTTACTCCTCTCCTGAAGATCGAGGAGCTGAATCTGG
GCGAGAATCGCATCGGCTATCTGGATCCCAAGGCTTTCGATGGACTCTCC
CAGTTGCGCATCCTTTATCTGGATGATAATGCCTTGACCACCGTTCCCGA
TCCCGTGATCTTCCAAGCCATGCCCAGTCTGGCTGAGCTGTTCCTTGGAA
TGAACACCCTGCAGAGCATTCAGGCTGATGCCTTCCAGGACCTGAAAGGA
CTTACTCGCCTGGAACTCAAGGGTGCCAGTCTACGCAACATCTCCCACGA
CAGCTTCCTCGGCTTGCAGGAGTTGCGCATTCTTGATCTTTCCGATAATC
GTCTGGATCGCATTCCCTCCGTGGGTCTCAGCAAGCTGGTTCGTCTGGAG
CAGCTGTCCCTGGGTCAAAACGATTTCGAGGTGATCAGCGAAGGCGCATT
CATGGGCCTGAAGCAACTTAAACGCCTGGAGGTGAATGGAGCTCTTAGGC
TGAAGCGTGTGATGACCGGAGCCTTCAGCGACAATGGTAACCTGGAGTAT
CTGAATCTATCGTCCAACAAAATGCTTTTGGAGGTTCAAGAAGGTGCCCT
CAGTGGGCTGTCCCAATTGAAGCATGTTGTTCTCAAGGCCAATGCGCTGA
CTTCCTTGGCAGAAGGTCTGTTCCCGTGGAAGGATCTTCAGACTCTGGAC
CTTTCCGAAAATCCCTTGTCCTGCGACTGCCGTGTGATGTGGCTGCACAA
TCTGCTGGTGGCCAAGAATGCCAGTCAGGATGATGTCTCCGAACTGCTGT
GTGAGTTCCCCGAACGTCTGCGCGGTGAATCCTTGCGCCATTTGAATCCT
GCTATGATGGGATGCACACATGCCGATCCTCGCAAGCAGGCCTTGATTGG
AGCTCTCCTGGTGGGATCTGCTGCCACGATTACCGCCTTGGCTTTGGTTC
TGTACCGCTGCCGTCATAAGATCCGCGAAACCATCAAGGGCGGTCTGTGG
GGTAACTCGGCTCTGGGCCGTAAGGAACGGGAATACCAGAAGACCTTCTG
CGACGAGGACTACATGTCGCGCCATCAGCATCATCCCTGCTCCCTGGGCA
TCCACTCCACGTTCCCCAACACCTATACCGCACCTCATCATCCCGGAGCT
ACCCATCACTATGGAATGTGCCCGATGCCTGTCAATGACCTGGGCGCCAT
CGATCCCCAGCAGAAGTTCCAACAGTTGGTAGTGCCCACCGCCACAATGA
TCAGTGAGAAGAAGCTGAATAACAACAAGGCCCTGGTTTCACAGGGAGCC
ATCGACGACAGTGCCTCATTTGTGCTGCACATGAAGTCGGCCACCATGGG
TCGGGATGTGCATCAGCAGAATCCCCAGCTGAACCACTATACCAAGCCGC
AGTTCCTCTCGGCCACGGCTACAGTTGGTGATTCCTGCTACTCATACGCG
GATGTGCCCATGGTGCATGGCGCCCCGTTGGGTGGACCGAATCAGCCGCA
ACTGCGACTGACCCAAGAGCACTTCAAGCAGCGTGAGCTATACGATCAGG
AGATGGGCAGCGAGATCCTGGACCACAACTACATCTACAGCAATACCCAC
TACTCGATGCCGTTGGAGCAACTGGGTCGCAGCAAGACGCCCACGCCGCC
ACCGATGCCACCAGCTTTGCCCCTGCGGAATGGACTGTGTGCCACCACAG
GACGCAGATCCTTCCAGCAGAAGTCCGCCTCTCAGAAGCAGCAGCAGAAC
AACAACACCCTGCGTCAGTTCACGCACGCAAGCTTTCTAGACCAT
BO07842.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:35:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trn-RB | 2256 | CG11280-PB | 1..2211 | 17..2227 | 11055 | 100 | Plus |
| trn-RA | 2214 | CG11280-PA | 1..2211 | 17..2227 | 11055 | 100 | Plus |
| caps-RE | 2436 | CG11282-PE | 114..537 | 91..514 | 545 | 75.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:35:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trn-RB | 3365 | CG11280-RB | 586..2796 | 17..2227 | 11055 | 100 | Plus |
| trn-RA | 3365 | CG11280-RA | 586..2796 | 17..2227 | 11055 | 100 | Plus |
| caps-RE | 4841 | CG11282-RE | 1001..1424 | 91..514 | 545 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:35:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13115298..13117508 | 17..2227 | 11055 | 100 | Plus |
| 3L | 28110227 | 3L | 13275802..13276225 | 91..514 | 545 | 75.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:35:21 has no hits.
BO07842.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:05 Download gff for
BO07842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trn-RA | 1..2214 | 17..2230 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:48 Download gff for
BO07842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trn-RA | 584..2801 | 17..2234 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:42 Download gff for
BO07842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trn-RA | 586..2796 | 17..2229 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:06 Download gff for
BO07842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trn-RA | 584..2801 | 17..2234 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:59 Download gff for
BO07842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trn-RA | 586..2796 | 17..2229 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:59 Download gff for
BO07842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13115298..13117508 | 17..2229 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:42 Download gff for
BO07842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13108398..13110608 | 17..2229 | 99 | | Plus |
BO07842.pep Sequence
Translation from 16 to 2245
> BO07842.pep
MQRNMMIAFVGIWCILASIGVEPAAGLANCPPGCQCDDNTLVVQCGEGQL
DVLPIALNPSIQRLVIKSNKIKTIDSSIQFYAELTFLDLSSNHLMTIPQR
TFAYQKKLQEVHLNHNKIGQISNKTFIGLSAVTVLNLRGNQISELHQGTF
TPLLKIEELNLGENRIGYLDPKAFDGLSQLRILYLDDNALTTVPDPVIFQ
AMPSLAELFLGMNTLQSIQADAFQDLKGLTRLELKGASLRNISHDSFLGL
QELRILDLSDNRLDRIPSVGLSKLVRLEQLSLGQNDFEVISEGAFMGLKQ
LKRLEVNGALRLKRVMTGAFSDNGNLEYLNLSSNKMLLEVQEGALSGLSQ
LKHVVLKANALTSLAEGLFPWKDLQTLDLSENPLSCDCRVMWLHNLLVAK
NASQDDVSELLCEFPERLRGESLRHLNPAMMGCTHADPRKQALIGALLVG
SAATITALALVLYRCRHKIRETIKGGLWGNSALGRKEREYQKTFCDEDYM
SRHQHHPCSLGIHSTFPNTYTAPHHPGATHHYGMCPMPVNDLGAIDPQQK
FQQLVVPTATMISEKKLNNNKALVSQGAIDDSASFVLHMKSATMGRDVHQ
QNPQLNHYTKPQFLSATATVGDSCYSYADVPMVHGAPLGGPNQPQLRLTQ
EHFKQRELYDQEMGSEILDHNYIYSNTHYSMPLEQLGRSKTPTPPPMPPA
LPLRNGLCATTGRRSFQQKSASQKQQQNNNTLRQFTHASFLDH
BO07842.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:36:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trn-PB | 751 | CG11280-PB | 1..739 | 1..739 | 3842 | 99.9 | Plus |
| trn-PA | 737 | CG11280-PA | 1..737 | 1..737 | 3839 | 100 | Plus |
| caps-PD | 780 | CG11282-PD | 30..754 | 15..730 | 1732 | 51.4 | Plus |
| caps-PE | 811 | CG11282-PE | 30..754 | 15..730 | 1732 | 51.4 | Plus |
| caps-PB | 540 | CG11282-PB | 30..519 | 15..513 | 1600 | 63.7 | Plus |
