Clone Sequence Records
BO07843.3prime Sequence
947 bp (840 high quality bases) assembled on 2006-01-06
> BO07843.3prime
ATGGTCTAGAAAGCTTGCGTTTTCGTTCACCGTGTCCTCCTCGTGCACCG
AGGGGTGTGCGCTTTTTTTCGAGGCGCACATGCTGAAGTACTTGGCCTTG
ACCTCCTCGATAGAATAGTCCACCTCGATGGCGGGATAGCTGGACTTATT
TTGTGTGAGGTTTTGGCCACGCAACATCTGCCAGTTTTCCAGCTTGTGCG
CATACTTCAAATACTTCTCAAAGTTATGCAATGTTTCGTAGACGTGGCAC
AGACCCAAATAATCGTACTCCAGGCCAGAGTATGAGTTCCCAAACAGACG
CAGGCTTATATCAATGCTGCGCATGTAAAGCTGTTCGGCATCACGGTATT
TCTTCATCTGGTAATTGTACAGCGAGGCCAAATGCCCAATGGACAGGCCA
ACCTCGTAGTCAAAGTGACCCAGCAGTTCCGACTTAATTTTGATCGCCTT
TTTGTGCATTCGTTCCGCCTCTTCGAAACGATTCATCGTTTGGTATAACC
GCCCCAGATTTCCATAGTGCTTCGCCGTCTGTACATTCACCTCGCCAAAC
ACTTGCAGCGAGAGAAGCAGGGCGAAATTGTGCAGCTCCTCGGATTGAAG
CAGCAGATCCTCCTCATCTATGCCATCAGCCATCTTGTCCAGCGCAATCT
CCTCCAGCAGGAGTGCCTTTACGCGCTTCGCCGATGCCAACATTAGATGA
TTGCTTGGCACCAGATGCTGCATTATATTCACAGCCTTGTCCACGTGATC
CTGGGCACAGCTAAAGTCACCGGTGCTGTACTCGTGAACGTAGTAGGCAT
ACGACAAATCCTCATGGGCAATGGCCACGTGAAAGTTCATATTCCCAAAA
ATACCACGACGCACGGCCAGTGCTTTCTTGTATATATTTACAGACTGGAA
CACCGAGTCCACGTTGAGTAGGAAAATCCGTAGTCCAGCAGTGCATC
BO07843.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10695-PA | 2061 | Pat1-RA | 1151..2058 | 926..19 | 4490 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:59:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pat1-RC | 3659 | CG10695-RC | 1497..2426 | 947..19 | 4595 | 99.7 | Minus |
| Pat1-RA | 3716 | CG10695-RA | 1497..2426 | 947..19 | 4595 | 99.7 | Minus |
| Pat1-RB | 3389 | CG10695-RB | 1497..2423 | 947..19 | 4540 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:59:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6594599..6595242 | 947..305 | 3140 | 99.5 | Minus |
| X | 23542271 | X | 6595314..6595471 | 305..148 | 790 | 100 | Minus |
| X | 23542271 | X | 6595536..6595664 | 147..19 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:59:26 has no hits.
BO07843.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:41 Download gff for
BO07843.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pat1-PA | 1129..2061 | 16..947 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:55 Download gff for
BO07843.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10695-PA | 1129..2061 | 16..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:23:38 Download gff for
BO07843.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pat1-RA | 1497..2426 | 19..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:24:22 Download gff for
BO07843.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pat1-RA | 1497..2426 | 19..947 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:24:22 Download gff for
BO07843.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6594599..6595241 | 306..947 | 99 | -> | Minus |
| X | 6595314..6595471 | 148..305 | 100 | -> | Minus |
| X | 6595536..6595664 | 19..147 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:23:38 Download gff for
BO07843.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6489347..6489504 | 148..305 | 100 | -> | Minus |
| arm_X | 6488632..6489274 | 306..947 | 99 | -> | Minus |
| arm_X | 6489569..6489697 | 19..147 | 100 | | Minus |
BO07843.5prime Sequence
959 bp (819 high quality bases) assembled on 2006-01-06
> BO07843.5prime
GAAGTTATCAGTCGACATGGCTGGCCAACAGCTCGTGGTCTTGATCCCCA
AAATAAATCCCAACTCCCCGAAGACCCTATACGACCTGTCGCTGCAGGCC
CTCATCGGGAGTATGAACACCAAGATACCGGCGCTGGACAGGATCAGTCG
ACTGGCTGAGCTGCCACGCAACTTGCTCATCGATGTTTACGAAATGATGT
CACAGCAGGAGTCCTTGAAGGACACGCTGCTGGAGGAGCTGGCCCAGCTT
GAGGTATTCGCTCGACTCGTTCGCTATCCATTTGCTCGCAGTCAATTGCT
GCGCATAATGGCCTCACTAATGGCCAGCCAAAAGATGCTGGCCAAAAGAC
TCAGCGAGAACTATGTGTCGCGCTATGAGGTGGTGGCCGGTCACGAAGAA
GAGGAACTGGAGTCGAGTATGGATACAGTTGAGGATCGCTCAACGGAGTT
CAGTTCACTGTATACCTACGATTCCGAATCTACAAATGCAGACAGCATCA
GTGATTTTAATGACGAATTCAGTGCTGATATCGGAAGCATAGTAGGTCTC
CCACACCGGAGAGCAACACAGGAGGAACTCGATGCGATCAATGATTCTGG
CCTCGAGGAGCTGTCCGCCGTTGAGCTGCAGGTCATAGATCTGGGCCTGC
GCCTCGGATCGTTCCTCTCGGAGGCTGGATGGATGCAGGAGAGCATTACC
GTGCTGGCATGCCTTAATGTAAGACTGAAGGATCTGCCGACCCACAAACA
CTGGTTGCAGTTTCGACTCGACTGCCTGCAGCGCCTTTTGTATGCCGAAT
CGGCCCATTGCAACTTCAAGGAGGCAGAGAAAAACTACGCGGAATTGATG
GGTCTGAACAAATGGCTCAATAAGAGCGTGCCAAACCAGCTGGTGGCCAT
AACCTACAGTCAGATTTCGGCCATGTACTTTGCCCCGCATGAGTACAAGA
ACAGTCATT
BO07843.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10695-PA | 2061 | Pat1-RA | 1..919 | 17..935 | 4570 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:59:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pat1-RC | 3659 | CG10695-RC | 365..1311 | 13..959 | 4660 | 99.6 | Plus |
| Pat1-RB | 3389 | CG10695-RB | 365..1311 | 13..959 | 4660 | 99.6 | Plus |
| Pat1-RA | 3716 | CG10695-RA | 365..1311 | 13..959 | 4660 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:59:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6593360..6593947 | 196..783 | 2940 | 100 | Plus |
| X | 23542271 | X | 6591580..6591763 | 13..196 | 905 | 99.5 | Plus |
| X | 23542271 | X | 6594088..6594264 | 783..959 | 825 | 97.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:59:22 has no hits.
BO07843.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:42 Download gff for
BO07843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pat1-PA | 1..943 | 17..959 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:57 Download gff for
BO07843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10695-PA | 1..943 | 17..959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:08:30 Download gff for
BO07843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pat1-RA | 362..1311 | 9..959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:33:33 Download gff for
BO07843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pat1-RA | 362..1311 | 9..959 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:33:33 Download gff for
BO07843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6591577..6591763 | 9..196 | 98 | -> | Plus |
| X | 6593361..6593947 | 197..783 | 100 | -> | Plus |
| X | 6594089..6594264 | 784..959 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:08:30 Download gff for
BO07843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6488122..6488297 | 784..959 | 98 | | Plus |
| arm_X | 6485610..6485796 | 9..196 | 98 | -> | Plus |
| arm_X | 6487394..6487980 | 197..783 | 100 | -> | Plus |
BO07843.complete Sequence
2092 bp (2092 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630956
> BO07843.complete
GAAGTTATCAGTCGACATGGCTGGCCAACAGCTCGTGGTCTTGATCCCCA
AAATAAATCCCAACTCCCCGAAGACCCTATACGACCTGTCGCTGCAGGCC
CTCATCGGGAGTATGAACACCAAGATACCGGCGCTGGACAGGATCAGTCG
ACTGGCTGAGCTGCCACGCAACTTGCTCATCGATGTTTACGAAATGATGT
CACAGCAGGAGTCCTTGAAGGACACGCTGCTGGAGGAGCTGGCCCAGCTT
GAGGTATTCGCTCGACTCGTTCGCTATCCATTTGCTCGCAGTCAATTGCT
GCGCATAATGGCCTCACTAATGGCCAGCCAAAAGATGCTGGCCAAAAGAC
TCAGCGAGAACTATGTGTCGCGCTATGAGGTGGTGGCCGGTCACGAAGAA
GAGGAACTGGAGTCGAGTATGGATACAGTTGAGGATCGCTCAACGGAGTT
CAGTTCACTGTATACCTACGATTCCGAATCTACAAATGCAGACAGCATCA
GTGATTTTAATGACGAATTCAGTGCTGATATCGGAAGCATAGTAGGTCTC
CCACACCGGAGAGCAACACAGGAGGAACTCGATGCGATCAATGATTCTGG
CCTCGAGGAGCTGTCCGCCGTTGAGCTGCAGGTCATAGATCTGGGCCTGC
GCCTCGGATCGTTCCTCTCGGAGGCTGGATGGATGCAGGAGAGCATTACC
GTGCTGGCATGCCTTAATGTAAGACTGAAGGATCTGCCGACCCACAAACA
CTGGTTGCAGTTTCGACTCGACTGCCTGCAGCGCCTTTTGTATGCCGAAT
CGGCCCATTGCAACTTCAAGGAGGCAGAGAAAACCTACGCGGAATTGATG
GGTCTGAACAAATGGCTCAATAAGAGCGTGCCAAACCAGCTGGTGGCCAT
AACCTACAGTCAGATTTCGGCCATGTACTTTGCCCGCAATGAGTACAAGA
ACAGTCATTTGTGGAGCGGTCTCGCCATGCGATTTTTAAAAGGATATGCG
AATCCACGCACCATCATCGATGTTCTGCGCCAGGCGGCGAAGGCCTGTGT
CGTTAAGCGGGACTTTGCCCGGGCCAATCTGCTCATCTGCCAGGCGGTGC
GACGCGCACGCGAGTACTTTGGCCCAACGCACCAGAAATACGGCGATGCA
CTGCTGGACTACGGATTTTTCCTACTCAACGTGGACTCGGTGTTCCAGTC
TGTAAATATATACAAAGAAGCACTGGCCGTGCGTCGTGGTATTTTTGGGA
ATATGAACTTTCACGTGGCCATTGCCCATGAGGATTTGTCGTATGCCTAC
TACGTTCACGAGTACAGCACCGGTGACTTTAGCTGTGCCCAGGATCACGT
GGACAAGGCTGTGAATATAATGCAGCATCTGGTGCCAAGCAATCATCTAA
TGTTGGCATCGGCGAAGCGCGTAAAGGCACTCCTGCTGGAGGAGATTGCG
CTGGACAAGATGGCTGATGGCATAGATGAGGAGGATCTGCTGCTTCAATC
CGAGGAGCTGCACAATTTCGCCCTGCTTCTCTCGCTGCAAGTGTTTGGCG
AGGTGAATGTACAGACGGCGAAGCACTATGGAAATCTGGGGCGGTTATAC
CAAACGATGAATCGTTTCGAAGAGGCGGAACGAATGCACAAAAAGGCGAT
CAAAATTAAGTCGGAACTGCTGGGTCACTTTGACTACGAGGTTGGCCTGT
CCATTGGGCATTTGGCCTCGCTGTACAATTACCAGATGAAGAAATACCGT
GATGCCGAACAGCTTTACATGCGCAGCATTGATATAAGCCTGCGTCTGTT
TGGGAACTCATACTCTGGCCTGGAGTACGATTATTTGGGTCTGTGCCACG
TCTACGAAACATTGCATAACTTTGAGAAGTATTTGAAGTATGCGCACAAG
CTGGAAAACTGGCAGATGTTGCGTGGCCAAAACCTCACACAAAATAAGTC
CAGCTATCCCGCCATCGAGGTGGACTATTCTATCGAGGAGGTCAAGGCCA
AGTACTTCAGCATGTGCGCCTCGAAAAAAAGCGCACACCCCTCGGTGCAC
GAGGAGGACACGGTGAACGAAAACGCAAGCTTTCTAGACCAT
BO07843.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:37:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pat1-RC | 2061 | CG10695-PC | 1..2058 | 17..2074 | 10290 | 100 | Plus |
| Pat1-RA | 2061 | CG10695-PA | 1..2058 | 17..2074 | 10290 | 100 | Plus |
| Pat1-RB | 2058 | CG10695-PB | 1..2055 | 17..2074 | 10210 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:37:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pat1-RC | 3659 | CG10695-RC | 365..2426 | 13..2074 | 10295 | 100 | Plus |
| Pat1-RA | 3716 | CG10695-RA | 365..2426 | 13..2074 | 10295 | 100 | Plus |
| Pat1-RB | 3389 | CG10695-RB | 365..2423 | 13..2074 | 10215 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:37:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6594564..6595242 | 1110..1788 | 3395 | 100 | Plus |
| X | 23542271 | X | 6593360..6593947 | 196..783 | 2940 | 100 | Plus |
| X | 23542271 | X | 6594088..6594313 | 783..1008 | 1130 | 100 | Plus |
| X | 23542271 | X | 6591580..6591763 | 13..196 | 905 | 99.5 | Plus |
| X | 23542271 | X | 6595314..6595471 | 1788..1945 | 790 | 100 | Plus |
| X | 23542271 | X | 6595536..6595664 | 1946..2074 | 645 | 100 | Plus |
| X | 23542271 | X | 6594383..6594485 | 1008..1110 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:37:56 has no hits.
BO07843.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:07 Download gff for
BO07843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pat1-RA | 1..2061 | 17..2077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:50 Download gff for
BO07843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pat1-RA | 360..2424 | 9..2074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:47 Download gff for
BO07843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pat1-RA | 369..2426 | 17..2076 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:07 Download gff for
BO07843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pat1-RA | 360..2424 | 9..2074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:17 Download gff for
BO07843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pat1-RA | 369..2426 | 17..2076 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:17 Download gff for
BO07843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6591584..6591763 | 17..196 | 100 | -> | Plus |
| X | 6593361..6593947 | 197..783 | 100 | -> | Plus |
| X | 6594089..6594313 | 784..1008 | 100 | -> | Plus |
| X | 6594384..6594485 | 1009..1110 | 100 | -> | Plus |
| X | 6594565..6595241 | 1111..1787 | 100 | -> | Plus |
| X | 6595314..6595471 | 1788..1945 | 100 | -> | Plus |
| X | 6595536..6595664 | 1946..2076 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:47 Download gff for
BO07843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6485617..6485796 | 17..196 | 100 | -> | Plus |
| arm_X | 6487394..6487980 | 197..783 | 100 | -> | Plus |
| arm_X | 6488122..6488346 | 784..1008 | 100 | -> | Plus |
| arm_X | 6488417..6488518 | 1009..1110 | 100 | -> | Plus |
| arm_X | 6488598..6489274 | 1111..1787 | 100 | -> | Plus |
| arm_X | 6489347..6489504 | 1788..1945 | 100 | -> | Plus |
| arm_X | 6489569..6489697 | 1946..2076 | 98 | | Plus |
BO07843.pep Sequence
Translation from 16 to 2092
> BO07843.pep
MAGQQLVVLIPKINPNSPKTLYDLSLQALIGSMNTKIPALDRISRLAELP
RNLLIDVYEMMSQQESLKDTLLEELAQLEVFARLVRYPFARSQLLRIMAS
LMASQKMLAKRLSENYVSRYEVVAGHEEEELESSMDTVEDRSTEFSSLYT
YDSESTNADSISDFNDEFSADIGSIVGLPHRRATQEELDAINDSGLEELS
AVELQVIDLGLRLGSFLSEAGWMQESITVLACLNVRLKDLPTHKHWLQFR
LDCLQRLLYAESAHCNFKEAEKTYAELMGLNKWLNKSVPNQLVAITYSQI
SAMYFARNEYKNSHLWSGLAMRFLKGYANPRTIIDVLRQAAKACVVKRDF
ARANLLICQAVRRAREYFGPTHQKYGDALLDYGFFLLNVDSVFQSVNIYK
EALAVRRGIFGNMNFHVAIAHEDLSYAYYVHEYSTGDFSCAQDHVDKAVN
IMQHLVPSNHLMLASAKRVKALLLEEIALDKMADGIDEEDLLLQSEELHN
FALLLSLQVFGEVNVQTAKHYGNLGRLYQTMNRFEEAERMHKKAIKIKSE
LLGHFDYEVGLSIGHLASLYNYQMKKYRDAEQLYMRSIDISLRLFGNSYS
GLEYDYLGLCHVYETLHNFEKYLKYAHKLENWQMLRGQNLTQNKSSYPAI
EVDYSIEEVKAKYFSMCASKKSAHPSVHEEDTVNENASFLDH
BO07843.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:36:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pat1-PC | 686 | CG10695-PC | 1..686 | 1..686 | 3512 | 100 | Plus |
| Pat1-PA | 686 | CG10695-PA | 1..686 | 1..686 | 3512 | 100 | Plus |
| Pat1-PB | 685 | CG10695-PB | 1..685 | 1..686 | 3495 | 99.9 | Plus |
