Clone BO07844 Report

Search the DGRC for BO07844

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:78
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCG5288-RA
Protein status:BO07844.pep: validated full length
Sequenced Size:1504

Clone Sequence Records

BO07844.3prime Sequence

936 bp (824 high quality bases) assembled on 2006-01-06

> BO07844.3prime
ATGGTCTAGAAAGCTTGCCTGTATATACAACTCGGCTCCGTTTCCTGGTA
GAGTGGCAAAGACCACTTCGCTAAAGTTGTTGGGCTGATGACGCTCCAGG
AGATGTGTTGGCAATTGAGCATAGTAATCGCGCTTCAAAACCTTTATGTA
CTCATCAGCTGCTTCTATGGAATCGCACATGGCAACTATACAACCGCCCC
AACCAGCTCCAGTGACTCGGGCGCTAACGTTCTGCTGGTTCGATATGGCA
ATCAGGCGCTCTACATCAGGATGAGAGCATTCGTATAGCTCCCTTAAACT
CTCGTGGGATTGCCGCATGAGCTCACCCAGCTGTTTTGCACCTTCCTTAT
TGGCTCCGCCGGCGAGTTCCTCACAAATTTTCCGGAATTTGGCCACGCGA
CCGGATTCCTGAATAACATGCAGAGCACGTTGACGCAGCTTGAACTGCTC
CATGTGCCGAGTGTTGGCGGATAGGAACTTGGTCTCCAGTTCCTGTTCGG
TGACTCCCAACTCCTTGCAGATATCCGCTCGCGTGTAGTTGCTCTTCGTT
AAGTTGTCCTTAATCAACTTCTCGAAAGTCTCATTATCCATTTGGCACGC
CTCCTCTAGATCAATGAAGCGCACAATATCCTCCCAGTTGATCAAGCCCT
TGCGCTTGGCCAGCCATCTAGTGGCCAATCGGCATTCCACCACTCGTTCA
TTGTAGTCCGACGAAGCAGCCTTGTTCTTTTGAGCCAGACTGTTGGCCAC
AACGAAGCACTTGCCCGCTGGCAAGGTCACCGGAGTGCCCTTGAGCTTGG
GATGGAACTCGATGTGGTGGGCGCAGCCAACTCTGCCCAAATAGGCTATT
GCCTGATCCATACCACCACTGTGCGTTTCAATGTACTGCTCACACATGGC
CGAAATGGAACCAGCTCCCTGCGATCTAGTTTCTTG

BO07844.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5288-PA 1473 CG5288-RA 579..1470 910..19 4435 99.8 Minus
CG5288-PB 1473 CG5288-RB 579..1470 910..19 4435 99.8 Minus
CG5288-PC 1473 CG5288-RC 579..1470 910..19 4435 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
Galk-RD 2035 CG5288-RD 981..1899 936..19 4555 99.8 Minus
Galk-RB 2053 CG5288-RB 999..1917 936..19 4555 99.8 Minus
Galk-RA 2669 CG5288-RA 673..1591 936..19 4555 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8983934..8984463 408..936 2585 99.6 Plus
3L 28110227 3L 8983532..8983737 203..408 1030 100 Plus
3L 28110227 3L 8983290..8983474 19..203 925 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:02:25 has no hits.

BO07844.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:43 Download gff for BO07844.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5288-PC 552..1473 16..936 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:58 Download gff for BO07844.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5288-PC 552..1473 16..936 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:57:19 Download gff for BO07844.3prime
Subject Subject Range Query Range Percent Splice Strand
Galk-RA 673..1606 6..936 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:45:56 Download gff for BO07844.3prime
Subject Subject Range Query Range Percent Splice Strand
Galk-RA 673..1606 6..936 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:45:56 Download gff for BO07844.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8983275..8983473 6..202 97 <- Plus
3L 8983532..8983736 203..407 100 <- Plus
3L 8983934..8984463 408..936 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:57:19 Download gff for BO07844.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8976375..8976573 6..202 97 <- Plus
arm_3L 8976632..8976836 203..407 100 <- Plus
arm_3L 8977034..8977563 408..936 99   Plus

BO07844.5prime Sequence

870 bp (825 high quality bases) assembled on 2006-01-06

> BO07844.5prime
GAAGTTATCAGTCGACATGACTGCCAACGGGAACGGAACTGCTCAGGATT
TGGGTGCCGGCATTGAAATCGTGGCCCCACAGAAGCTCCAGCCGGAATCC
AAGGTTTACGGGCGCGTGCAGCAATTGACCGCATTTTTCAAACAACAATT
CGGAGCGAATCCGGACTTTATCGTTCGAGTGCCAGGAAGGGTCAACATCA
TTGGCGAGCATGTGGACTACTGCGGCTATTCGGTGCTGCCCATGGCTGTA
AGCCAGAGCATTTTCCTTGCAGTGGCCAAGAATCCTAGTGATAGCCAGCT
TCAACTCAGAAATCTCGAGGAAGCGAAGTTTACGGGCTACGATGCCGATC
TCAAAACGCTCAGAATCGAGCTTCCAAAGAGTGGTGGACCCGCTTGGTAT
AACTACTTCTTGTGCGGCATCAAAGGAATACAGGAGAGTCTGGGCAGCCA
GTGGAAGCCCATTGGCATGCGCATTGCTGTGGACGGTAATGTGCCCTTGG
CGGCAGGACTCTCCAGTTCGAGTGCCATGGTCAGCTCCGCTGTGTTGGCC
ACCGCACACGTCCAGGGCAAGAAACTAGATCGCAGGGAGCTGGCTTCCAT
TTCGGCCATGTGTGAGCAGTACATTGGAACGCACAGTGGTGGTATGGATC
AGGCAATAGCCTATTTGGGCAGAGTTGGCTGCGCCCACCACATCGAGTTC
CATCCCAAGCTCAAGGGCACTCCGGTGACCTTGCCAGCGGGCAAGTGCTT
CGTTGTGGCCAACAGTCTGGCTCAAAAGAACAAGGCTGCTTCGTCGGACT
ACAATGAACGAGTGGTGGAATGCCGATTGGCCACTAGATGGCTGGCCAAG
CGCAAGGGCTTGATCAACTG

BO07844.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5288-PA 1473 CG5288-RA 1..854 17..870 4270 100 Plus
CG5288-PB 1473 CG5288-RB 1..854 17..870 4270 100 Plus
CG5288-PC 1473 CG5288-RC 1..854 17..870 4270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
Galk-RD 2035 CG5288-RD 428..1283 15..870 4280 100 Plus
Galk-RB 2053 CG5288-RB 446..1301 15..870 4280 100 Plus
Galk-RA 2669 CG5288-RA 120..975 15..870 4280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:22:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8984161..8984669 870..362 2545 100 Minus
3L 28110227 3L 8984813..8984988 363..188 880 100 Minus
3L 28110227 3L 8985052..8985227 190..15 880 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:23:00 has no hits.

BO07844.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:44 Download gff for BO07844.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5288-PC 1..854 17..870 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:17:59 Download gff for BO07844.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5288-PC 1..854 17..870 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:49:30 Download gff for BO07844.5prime
Subject Subject Range Query Range Percent Splice Strand
Galk-RA 116..975 11..870 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:09:59 Download gff for BO07844.5prime
Subject Subject Range Query Range Percent Splice Strand
Galk-RA 116..975 11..870 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:09:59 Download gff for BO07844.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8984161..8984667 364..870 100 <- Minus
3L 8984813..8984986 190..363 100 <- Minus
3L 8985053..8985231 11..189 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:49:30 Download gff for BO07844.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8977261..8977767 364..870 100 <- Minus
arm_3L 8977913..8978086 190..363 100 <- Minus
arm_3L 8978153..8978331 11..189 98   Minus

BO07844.complete Sequence

1504 bp (1504 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630957

> BO07844.complete
GAAGTTATCAGTCGACATGACTGCCAACGGGAACGGAACTGCTCAGGATT
TGGGTGCCGGCATTGAAATCGTGGCCCCACAGAAGCTCCAGCCGGAATCC
AAGGTTTACGGGCGCGTGCAGCAATTGACCGCATTTTTCAAACAACAATT
CGGAGCGAATCCGGACTTTATCGTTCGAGTGCCAGGAAGGGTCAACATCA
TTGGCGAGCATGTGGACTACTGCGGCTATTCGGTGCTGCCCATGGCTGTA
AGCCAGAGCATTTTCCTTGCAGTGGCCAAGAATCCTAGTGATAGCCAGCT
TCAACTCAGAAATCTCGAGGAAGCGAAGTTTACGGGCTACGATGCCGATC
TCAAAACGCTCAGAATCGAGCTTCCAAAGAGTGGTGGACCCGCTTGGTAT
AACTACTTCTTGTGCGGCATCAAAGGAATACAGGAGAGTCTGGGCAGCCA
GTGGAAGCCCATTGGCATGCGCATTGCTGTGGACGGTAATGTGCCCTTGG
CGGCAGGACTCTCCAGTTCGAGTGCCATGGTCAGCTCCGCTGTGTTGGCC
ACCGCACACGTCCAGGGCAAGAAACTAGATCGCAGGGAGCTGGCTTCCAT
TTCGGCCATGTGTGAGCAGTACATTGGAACGCACAGTGGTGGTATGGATC
AGGCAATAGCCTATTTGGGCAGAGTTGGCTGCGCCCACCACATCGAGTTC
CATCCCAAGCTCAAGGGCACTCCGGTGACCTTGCCAGCGGGCAAGTGCTT
CGTTGTGGCCAACAGTCTGGCTCAAAAGAACAAGGCTGCTTCGTCGGACT
ACAATGAACGAGTGGTGGAATGCCGATTGGCCACTAGATGGCTGGCCAAG
CGCAAGGGCTTGATCAACTGGGAGGATATTGTGCGCTTCATTGATCTAGA
GGAGGCGTGCCAAATGGATAATGAGACTTTCGAGAAGTTGATTAAGGACA
ACTTAACGAAGAGCAACTACACGCGAGCGGATATCTGCAAGGAGTTGGGA
GTCACCGAACAGGAACTGGAGACCAAGTTCCTATCCGCCAACACTCGGCA
CATGGAGCAGTTCAAGCTGCGTCAACGTGCTCTGCATGTTATTCAGGAAT
CCGGTCGCGTGGCCAAATTCCGGAAAATTTGTGAGGAACTCGCCGGCGGA
GCCAATAAGGAAGGTGCAAAACAGCTGGGTGAGCTCATGCGGCAATCCCA
CGAGAGTTTAAGGGAGCTATACGAATGCTCTCATCCTGATGTAGAGCGCC
TGATTGCCATATCGAACCAGCAGAACGTTAGCGCCCGAGTCACTGGAGCT
GGTTGGGGCGGTTGTATAGTTGCCATGTGCGATTCCATAGAAGCAGCTGA
TGAGTACATAAAGGTTTTGAAGCGCGATTACTATGCTCAATTGCCAACAC
ATCTCCTGGAGCGTCATCAGCCCAACAACTTTAGCGAAGTGGTCTTTGCC
ACTCTACCAGGAAACGGAGCCGAGTTGTATATACAGGCAAGCTTTCTAGA
CCAT

BO07844.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
Galk-RD 1473 CG5288-PD 1..1470 17..1486 7350 100 Plus
Galk-RB 1473 CG5288-PB 1..1470 17..1486 7350 100 Plus
Galk-RA 1473 CG5288-PA 1..1470 17..1486 7350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
Galk-RD 2035 CG5288-RD 428..1899 15..1486 7360 100 Plus
Galk-RB 2053 CG5288-RB 446..1917 15..1486 7360 100 Plus
Galk-RA 2669 CG5288-RA 120..1591 15..1486 7360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8983934..8984669 1097..362 3680 100 Minus
3L 28110227 3L 8983532..8983737 1302..1097 1030 100 Minus
3L 28110227 3L 8983290..8983474 1486..1302 925 100 Minus
3L 28110227 3L 8984813..8984988 363..188 880 100 Minus
3L 28110227 3L 8985052..8985227 190..15 880 100 Minus
Blast to na_te.dros performed on 2014-11-26 21:47:24 has no hits.

BO07844.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:33 Download gff for BO07844.complete
Subject Subject Range Query Range Percent Splice Strand
CG5288-RC 1..1473 17..1489 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:36:08 Download gff for BO07844.complete
Subject Subject Range Query Range Percent Splice Strand
CG5288-RC 178..1673 7..1499 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:36:45 Download gff for BO07844.complete
Subject Subject Range Query Range Percent Splice Strand
Galk-RA 122..1591 17..1488 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:33 Download gff for BO07844.complete
Subject Subject Range Query Range Percent Splice Strand
CG5288-RC 178..1673 7..1499 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:42:17 Download gff for BO07844.complete
Subject Subject Range Query Range Percent Splice Strand
Galk-RA 122..1591 17..1488 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:42:17 Download gff for BO07844.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8983532..8983736 1098..1302 100 <- Minus
3L 8983287..8983473 1303..1488 98 <- Minus
3L 8983934..8984667 364..1097 100 <- Minus
3L 8984813..8984986 190..363 100 <- Minus
3L 8985053..8985225 17..189 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:36:45 Download gff for BO07844.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8976387..8976573 1303..1488 98 <- Minus
arm_3L 8976632..8976836 1098..1302 100 <- Minus
arm_3L 8977034..8977767 364..1097 100 <- Minus
arm_3L 8977913..8978086 190..363 100 <- Minus
arm_3L 8978153..8978325 17..189 100   Minus

BO07844.pep Sequence

Translation from 16 to 1504

> BO07844.pep
MTANGNGTAQDLGAGIEIVAPQKLQPESKVYGRVQQLTAFFKQQFGANPD
FIVRVPGRVNIIGEHVDYCGYSVLPMAVSQSIFLAVAKNPSDSQLQLRNL
EEAKFTGYDADLKTLRIELPKSGGPAWYNYFLCGIKGIQESLGSQWKPIG
MRIAVDGNVPLAAGLSSSSAMVSSAVLATAHVQGKKLDRRELASISAMCE
QYIGTHSGGMDQAIAYLGRVGCAHHIEFHPKLKGTPVTLPAGKCFVVANS
LAQKNKAASSDYNERVVECRLATRWLAKRKGLINWEDIVRFIDLEEACQM
DNETFEKLIKDNLTKSNYTRADICKELGVTEQELETKFLSANTRHMEQFK
LRQRALHVIQESGRVAKFRKICEELAGGANKEGAKQLGELMRQSHESLRE
LYECSHPDVERLIAISNQQNVSARVTGAGWGGCIVAMCDSIEAADEYIKV
LKRDYYAQLPTHLLERHQPNNFSEVVFATLPGNGAELYIQASFLDH

BO07844.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
Galk-PD 490 CG5288-PD 1..490 1..490 2540 100 Plus
Galk-PB 490 CG5288-PB 1..490 1..490 2540 100 Plus
Galk-PA 490 CG5288-PA 1..490 1..490 2540 100 Plus
Galk-PC 490 CG5288-PC 1..490 1..490 2540 100 Plus