Clone Sequence Records
BO07847.3prime Sequence
962 bp (827 high quality bases) assembled on 2006-01-06
> BO07847.3prime
ATGGTCTAGAAAGCTTGCGGTGGTCCCACCAAGGTGCAGATCATTGAGAA
ACTTCGAGTTGAGTCGCTCGTTGGTTAAATACCTCGCCAGGCTGACACTT
GGAGCGCTGCAGTTGCTCATGCCGCGTTGATCCGACTCCGAGGGCGTATA
ACCCGGTCGGCAGACGCACTTGGCCCGACTGGCGTGGACCAAAATTGAGG
TGCCATTCGTGGTTTGCGATTTCAGTGGCTCTAGCCACTGACCCGCGCCG
CAGGGTCCTCGGCTATACAGCTTGTGGCACTGCCCATTGATCTCCACCAT
TCCGGGCGTGGACTCGCATATATTCTGTTCCTTATCCGCTCCATCTCCCG
TGCACTGCTGATCCAGATTGGTGAGGACACCGGAACAACCGCACATTCCA
TTGTAGGAGATGCCATCGATGGATGGCCTGGCGGTGAAGTCGAAGATCAC
CACCTGATGTAGGGCACACGGGCCTTGAGATCCAATCCTGTAGCAAGAAT
CTTCCGCTGGGAAGTACAGGCGATTCTTGCCACAGAAGTTGCGCACACAG
CTGGTTCCGTTGACCAGGAACTCATTGGGTCCACAGGGACCCCTTGTGTA
CAGGCGATAGCAGATGCCATCGCTCCAGGGCACATAGCCCTCCTTGCACT
GGCACTGGGCACGAGGCAAAAGCTGCAGGGTGCTGCCCGTTGTCTCCTGG
ACCTCGTCGGGTATGCGAAAGATGTGACCAGGTGGACAGGGGCCAGGAGT
GTCCAGCTCATAGCACATTTGATGCGGAGCATGATAGTGCGGCAAGTGCC
GCTGGCAGTCGCATCGACCGCCGGGCAAGAAGATGTGACCCGGCGTCGAG
CAGGGTCCTTTGGTGTAGTGCTCATAGCAAGACTCCTCTGCCGGATAGTA
GAACGAGGCCAAGTCGCCCACATCCTCGCAACGGCACTCGGCCAGTCCCT
CCTCGTTGCGAA
BO07847.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16959-PA | 1512 | CG16959-RA | 566..1509 | 962..19 | 4720 | 100 | Minus |
CG16959-PB | 1512 | CG16959-RB | 566..1509 | 962..19 | 4720 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:07:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16959-RB | 2092 | CG16959-RB | 811..1754 | 962..19 | 4720 | 100 | Minus |
CG16959-RA | 2292 | CG16959-RA | 1011..1954 | 962..19 | 4720 | 100 | Minus |
CG16959-RE | 1866 | CG16959-RE | 834..1715 | 962..81 | 4410 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:07:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15120216..15120950 | 19..753 | 3675 | 100 | Plus |
3L | 28110227 | 3L | 15121064..15121273 | 753..962 | 1050 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:07:08 has no hits.
BO07847.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:49 Download gff for
BO07847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16959-PB | 568..1512 | 15..960 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:06 Download gff for
BO07847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16959-PB | 568..1512 | 15..960 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:46:41 Download gff for
BO07847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16959-RA | 1011..1957 | 15..962 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:05:03 Download gff for
BO07847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16959-RA | 1011..1957 | 15..962 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:05:03 Download gff for
BO07847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15120212..15120949 | 15..752 | 99 | <- | Plus |
3L | 15121064..15121273 | 753..962 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:46:41 Download gff for
BO07847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15113312..15114049 | 15..752 | 99 | <- | Plus |
arm_3L | 15114164..15114373 | 753..962 | 100 | | Plus |
BO07847.5prime Sequence
898 bp (824 high quality bases) assembled on 2006-01-06
> BO07847.5prime
GAAGTTATCAGTCGACATGAGGCGTCGCAAAGTGCTCATCTGCTGGGCTG
CTCTGCAGGCGGGCAGCTCCATCCTCACCTGCCTGCTCCTCCTACTGACC
ACCGGCCAGAATCCGCAGCAGGTGGCAGCCGGAATAGTGCCGCCTCCGTG
GAGTGATCCCGCACAGAATCCGTGCGCCAGCATGTCCGGTGGCTGGCAGC
TGCTGTACTGGGCACCTCTGAAGAAGTGCTTCAAGATCTTCACCCTCGGC
TATCCATGTCCGGCCACCATGGAGCTCAGTCCCACCGCAGTGAGTGCCAA
GCGTAAGGATGCACCTGCAGCCGAGTGCCGCTGCCCTCCGGGAACTGCAC
TCAGTCCGCTTCACGATAATGTGTGCTACAAGCTATACGAACGGGGACCC
TGCCAACCCGAGGAGTACTTCCAACCCGTGCCGGATCAGGTCAAGAGAAC
CGCAACCGGCAACCGTTGGGGTACGTGCAAGCGACCGCTGCATTGCCCGG
AGGACATGCTCTTCTGGCCGAGGGACAACAAGTGCTATGCGAGGCATGCA
AAGGGTCCATGCAGCCGGGGTAAACTCCTCGTTCGCAACGAGGAGGGACT
GGCCGAGTGCCGTTGCGAGGATGTGGGCGACTTGGCCTCGTTCTACTATC
CGGCAGAGGAGTCTTGCTATGAGCACTACACCAAAGGACCCTGCTCGACG
CCGGGTCACATCTTCTTGCCCGGCGGTCGATGCGACTGCCAGCGGCACTT
GCCGCACTATCATGCTCCGCATCAAATGTGCTATGAGCTGGACACTCCTG
GCCCCTGTCCACCTGGTCACATCTTTCGCATACCCGACGAGGTCCAGGAG
ACAACGGGCAGCACCCTGCAGCTTTTGCCTCGTGCCCAGTGCCAGTGC
BO07847.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16959-PA | 1512 | CG16959-RA | 1..882 | 17..898 | 4410 | 100 | Plus |
CG16959-PB | 1512 | CG16959-RB | 1..882 | 17..898 | 4410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:23:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16959-RE | 1866 | CG16959-RE | 268..1150 | 16..898 | 4415 | 100 | Plus |
CG16959-RD | 1843 | CG16959-RD | 245..1127 | 16..898 | 4415 | 100 | Plus |
CG16959-RC | 2043 | CG16959-RC | 445..1327 | 16..898 | 4415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:23:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15122624..15123055 | 447..16 | 2160 | 100 | Minus |
3L | 28110227 | 3L | 15121064..15121409 | 791..446 | 1730 | 100 | Minus |
3L | 28110227 | 3L | 15120843..15120950 | 898..791 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:23:19 has no hits.
BO07847.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:50 Download gff for
BO07847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16959-PB | 1..882 | 17..898 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:08 Download gff for
BO07847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16959-PB | 1..882 | 17..898 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:09:15 Download gff for
BO07847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16959-RB | 241..1127 | 12..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:08 Download gff for
BO07847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16959-RC | 441..1327 | 12..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:08 Download gff for
BO07847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15120843..15120949 | 792..898 | 100 | <- | Minus |
3L | 15121064..15121407 | 448..791 | 100 | <- | Minus |
3L | 15122624..15123059 | 12..447 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:09:15 Download gff for
BO07847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15113943..15114049 | 792..898 | 100 | <- | Minus |
arm_3L | 15114164..15114507 | 448..791 | 100 | <- | Minus |
arm_3L | 15115724..15116159 | 12..447 | 99 | | Minus |
BO07847.complete Sequence
1543 bp (1543 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630958
> BO07847.complete
GAAGTTATCAGTCGACATGAGGCGTCGCAAAGTGCTCATCTGCTGGGCTG
CTCTGCAGGCGGGCAGCTCCATCCTCACCTGCCTGCTCCTCCTACTGACC
ACCGGCCAGAATCCGCAGCAGGTGGCAGCCGGAATAGTGCCGCCTCCGTG
GAGTGATCCCGCACAGAATCCGTGCGCCAGCATGTCCGGTGGCTGGCAGC
TGCTGTACTGGGCACCTCTGAAGAAGTGCTTCAAGATCTTCACCCTCGGC
TATCCATGTCCGGCCACCATGGAGCTCAGTCCCACCGCAGTGAGTGCCAA
GCGTAAGGATGCACCTGCAGCCGAGTGCCGCTGCCCTCCGGGAACTGCAC
TCAGTCCGCTTCACGATAATGTGTGCTACAAGCTATACGAACGGGGACCC
TGCCAACCCGAGGAGTACTTCCAACCCGTGCCGGATCAGGTCAAGAGAAC
CGCAACCGGCAACCGTTGGGGTACGTGCAAGCGACCGCTGCATTGCCCGG
AGGACATGCTCTTCTGGCCGAGGGACAACAAGTGCTATGCGAGGCATGCA
AAGGGTCCATGCAGCCGGGGTAAACTCCTCGTTCGCAACGAGGAGGGACT
GGCCGAGTGCCGTTGCGAGGATGTGGGCGACTTGGCCTCGTTCTACTATC
CGGCAGAGGAGTCTTGCTATGAGCACTACACCAAAGGACCCTGCTCGACG
CCGGGTCACATCTTCTTGCCCGGCGGTCGATGCGACTGCCAGCGGCACTT
GCCGCACTATCATGCTCCGCATCAAATGTGCTATGAGCTGGACACTCCTG
GCCCCTGTCCACCTGGTCACATCTTTCGCATACCCGACGAGGTCCAGGAG
ACAACGGGCAGCACCCTGCAGCTTTTGCCTCGTGCCCAGTGCCAGTGCAA
GGAGGGCTATGTGCCCTGGAGCGATGGCATCTGCTATCGCCTGTACACAA
GGGGTCCCTGTGGACCCAATGAGTTCCTGGTCAACGGAACCAGCTGTGTG
CGCAACTTCTGTGGCAAGAATCGCCTGTACTTCCCAGCGGAAGATTCTTG
CTACAGGATTGGATCTCAAGGCCCGTGTGCCCTACATCAGGTGGTGATCT
TCGACTTCACCGCCAGGCCATCCATCGATGGCATCTCCTACAATGGAATG
TGCGGTTGTTCCGGTGTCCTCACCAATCTGGATCAGCAGTGCACGGGAGA
TGGAGCGGATAAGGAACAGAATATATGCGAGTCCACGCCCGGAATGGTGG
AGATCAATGGGCAGTGCCACAAGCTGTATAGCCGAGGACCCTGCGGCGCG
GGTCAGTGGCTAGAGCCACTGAAATCGCAAACCACGAATGGCACCTCAAT
TTTGGTCCACGCCAGTCGGGCCAAGTGCGTCTGCCGACCGGGTTATACGC
CCTCGGAGTCGGATCAACGCGGCATGAGCAACTGCAGCGCTCCAAGTGTC
AGCCTGGCGAGGTATTTAACCAACGAGCGACTCAACTCGAAGTTTCTCAA
TGATCTGCACCTTGGTGGGACCACCGCAAGCTTTCTAGACCAT
BO07847.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:10:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16959-RB | 1512 | CG16959-PB | 1..1509 | 17..1525 | 7545 | 100 | Plus |
CG16959-RA | 1512 | CG16959-PA | 1..1509 | 17..1525 | 7545 | 100 | Plus |
CG16959-RE | 1470 | CG16959-PE | 1..1447 | 17..1463 | 7235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:10:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16959-RB | 2092 | CG16959-RB | 245..1754 | 16..1525 | 7550 | 100 | Plus |
CG16959-RA | 2292 | CG16959-RA | 445..1954 | 16..1525 | 7550 | 100 | Plus |
CG16959-RE | 1866 | CG16959-RE | 268..1715 | 16..1463 | 7240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:10:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15120216..15120950 | 1525..791 | 3675 | 100 | Minus |
3L | 28110227 | 3L | 15122624..15123055 | 447..16 | 2160 | 100 | Minus |
3L | 28110227 | 3L | 15121064..15121409 | 791..446 | 1730 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:10:44 has no hits.
BO07847.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:18 Download gff for
BO07847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16959-RB | 1..1512 | 17..1529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:47 Download gff for
BO07847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16959-RB | 238..1754 | 12..1529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:00 Download gff for
BO07847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16959-RA | 446..1954 | 17..1527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:18 Download gff for
BO07847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16959-RB | 238..1754 | 12..1529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:49 Download gff for
BO07847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16959-RA | 446..1954 | 17..1527 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:49 Download gff for
BO07847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15120214..15120949 | 792..1527 | 99 | <- | Minus |
3L | 15121064..15121407 | 448..791 | 100 | <- | Minus |
3L | 15122624..15123054 | 17..447 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:00 Download gff for
BO07847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15113314..15114049 | 792..1527 | 99 | <- | Minus |
arm_3L | 15114164..15114507 | 448..791 | 100 | <- | Minus |
arm_3L | 15115724..15116154 | 17..447 | 100 | | Minus |
BO07847.pep Sequence
Translation from 16 to 1543
> BO07847.pep
MRRRKVLICWAALQAGSSILTCLLLLLTTGQNPQQVAAGIVPPPWSDPAQ
NPCASMSGGWQLLYWAPLKKCFKIFTLGYPCPATMELSPTAVSAKRKDAP
AAECRCPPGTALSPLHDNVCYKLYERGPCQPEEYFQPVPDQVKRTATGNR
WGTCKRPLHCPEDMLFWPRDNKCYARHAKGPCSRGKLLVRNEEGLAECRC
EDVGDLASFYYPAEESCYEHYTKGPCSTPGHIFLPGGRCDCQRHLPHYHA
PHQMCYELDTPGPCPPGHIFRIPDEVQETTGSTLQLLPRAQCQCKEGYVP
WSDGICYRLYTRGPCGPNEFLVNGTSCVRNFCGKNRLYFPAEDSCYRIGS
QGPCALHQVVIFDFTARPSIDGISYNGMCGCSGVLTNLDQQCTGDGADKE
QNICESTPGMVEINGQCHKLYSRGPCGAGQWLEPLKSQTTNGTSILVHAS
RAKCVCRPGYTPSESDQRGMSNCSAPSVSLARYLTNERLNSKFLNDLHLG
GTTASFLDH
BO07847.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16959-PB | 503 | CG16959-PB | 1..503 | 1..503 | 2845 | 100 | Plus |
CG16959-PA | 503 | CG16959-PA | 1..503 | 1..503 | 2845 | 100 | Plus |
CG16959-PE | 489 | CG16959-PE | 1..483 | 1..483 | 2736 | 99.8 | Plus |
CG16959-PD | 489 | CG16959-PD | 1..483 | 1..483 | 2736 | 99.8 | Plus |
CG16959-PC | 489 | CG16959-PC | 1..483 | 1..483 | 2736 | 99.8 | Plus |