Clone BO07847 Report

Search the DGRC for BO07847

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:78
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG16959-RA
Protein status:BO07847.pep: validated full length
Sequenced Size:1543

Clone Sequence Records

BO07847.3prime Sequence

962 bp (827 high quality bases) assembled on 2006-01-06

> BO07847.3prime
ATGGTCTAGAAAGCTTGCGGTGGTCCCACCAAGGTGCAGATCATTGAGAA
ACTTCGAGTTGAGTCGCTCGTTGGTTAAATACCTCGCCAGGCTGACACTT
GGAGCGCTGCAGTTGCTCATGCCGCGTTGATCCGACTCCGAGGGCGTATA
ACCCGGTCGGCAGACGCACTTGGCCCGACTGGCGTGGACCAAAATTGAGG
TGCCATTCGTGGTTTGCGATTTCAGTGGCTCTAGCCACTGACCCGCGCCG
CAGGGTCCTCGGCTATACAGCTTGTGGCACTGCCCATTGATCTCCACCAT
TCCGGGCGTGGACTCGCATATATTCTGTTCCTTATCCGCTCCATCTCCCG
TGCACTGCTGATCCAGATTGGTGAGGACACCGGAACAACCGCACATTCCA
TTGTAGGAGATGCCATCGATGGATGGCCTGGCGGTGAAGTCGAAGATCAC
CACCTGATGTAGGGCACACGGGCCTTGAGATCCAATCCTGTAGCAAGAAT
CTTCCGCTGGGAAGTACAGGCGATTCTTGCCACAGAAGTTGCGCACACAG
CTGGTTCCGTTGACCAGGAACTCATTGGGTCCACAGGGACCCCTTGTGTA
CAGGCGATAGCAGATGCCATCGCTCCAGGGCACATAGCCCTCCTTGCACT
GGCACTGGGCACGAGGCAAAAGCTGCAGGGTGCTGCCCGTTGTCTCCTGG
ACCTCGTCGGGTATGCGAAAGATGTGACCAGGTGGACAGGGGCCAGGAGT
GTCCAGCTCATAGCACATTTGATGCGGAGCATGATAGTGCGGCAAGTGCC
GCTGGCAGTCGCATCGACCGCCGGGCAAGAAGATGTGACCCGGCGTCGAG
CAGGGTCCTTTGGTGTAGTGCTCATAGCAAGACTCCTCTGCCGGATAGTA
GAACGAGGCCAAGTCGCCCACATCCTCGCAACGGCACTCGGCCAGTCCCT
CCTCGTTGCGAA

BO07847.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG16959-PA 1512 CG16959-RA 566..1509 962..19 4720 100 Minus
CG16959-PB 1512 CG16959-RB 566..1509 962..19 4720 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG16959-RB 2092 CG16959-RB 811..1754 962..19 4720 100 Minus
CG16959-RA 2292 CG16959-RA 1011..1954 962..19 4720 100 Minus
CG16959-RE 1866 CG16959-RE 834..1715 962..81 4410 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15120216..15120950 19..753 3675 100 Plus
3L 28110227 3L 15121064..15121273 753..962 1050 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:07:08 has no hits.

BO07847.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:49 Download gff for BO07847.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16959-PB 568..1512 15..960 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:06 Download gff for BO07847.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16959-PB 568..1512 15..960 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:46:41 Download gff for BO07847.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16959-RA 1011..1957 15..962 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:05:03 Download gff for BO07847.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16959-RA 1011..1957 15..962 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:05:03 Download gff for BO07847.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15120212..15120949 15..752 99 <- Plus
3L 15121064..15121273 753..962 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:46:41 Download gff for BO07847.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15113312..15114049 15..752 99 <- Plus
arm_3L 15114164..15114373 753..962 100   Plus

BO07847.5prime Sequence

898 bp (824 high quality bases) assembled on 2006-01-06

> BO07847.5prime
GAAGTTATCAGTCGACATGAGGCGTCGCAAAGTGCTCATCTGCTGGGCTG
CTCTGCAGGCGGGCAGCTCCATCCTCACCTGCCTGCTCCTCCTACTGACC
ACCGGCCAGAATCCGCAGCAGGTGGCAGCCGGAATAGTGCCGCCTCCGTG
GAGTGATCCCGCACAGAATCCGTGCGCCAGCATGTCCGGTGGCTGGCAGC
TGCTGTACTGGGCACCTCTGAAGAAGTGCTTCAAGATCTTCACCCTCGGC
TATCCATGTCCGGCCACCATGGAGCTCAGTCCCACCGCAGTGAGTGCCAA
GCGTAAGGATGCACCTGCAGCCGAGTGCCGCTGCCCTCCGGGAACTGCAC
TCAGTCCGCTTCACGATAATGTGTGCTACAAGCTATACGAACGGGGACCC
TGCCAACCCGAGGAGTACTTCCAACCCGTGCCGGATCAGGTCAAGAGAAC
CGCAACCGGCAACCGTTGGGGTACGTGCAAGCGACCGCTGCATTGCCCGG
AGGACATGCTCTTCTGGCCGAGGGACAACAAGTGCTATGCGAGGCATGCA
AAGGGTCCATGCAGCCGGGGTAAACTCCTCGTTCGCAACGAGGAGGGACT
GGCCGAGTGCCGTTGCGAGGATGTGGGCGACTTGGCCTCGTTCTACTATC
CGGCAGAGGAGTCTTGCTATGAGCACTACACCAAAGGACCCTGCTCGACG
CCGGGTCACATCTTCTTGCCCGGCGGTCGATGCGACTGCCAGCGGCACTT
GCCGCACTATCATGCTCCGCATCAAATGTGCTATGAGCTGGACACTCCTG
GCCCCTGTCCACCTGGTCACATCTTTCGCATACCCGACGAGGTCCAGGAG
ACAACGGGCAGCACCCTGCAGCTTTTGCCTCGTGCCCAGTGCCAGTGC

BO07847.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG16959-PA 1512 CG16959-RA 1..882 17..898 4410 100 Plus
CG16959-PB 1512 CG16959-RB 1..882 17..898 4410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG16959-RE 1866 CG16959-RE 268..1150 16..898 4415 100 Plus
CG16959-RD 1843 CG16959-RD 245..1127 16..898 4415 100 Plus
CG16959-RC 2043 CG16959-RC 445..1327 16..898 4415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:23:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15122624..15123055 447..16 2160 100 Minus
3L 28110227 3L 15121064..15121409 791..446 1730 100 Minus
3L 28110227 3L 15120843..15120950 898..791 540 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:23:19 has no hits.

BO07847.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:50 Download gff for BO07847.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16959-PB 1..882 17..898 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:08 Download gff for BO07847.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16959-PB 1..882 17..898 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:09:15 Download gff for BO07847.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16959-RB 241..1127 12..898 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:08 Download gff for BO07847.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16959-RC 441..1327 12..898 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:08 Download gff for BO07847.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15120843..15120949 792..898 100 <- Minus
3L 15121064..15121407 448..791 100 <- Minus
3L 15122624..15123059 12..447 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:09:15 Download gff for BO07847.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15113943..15114049 792..898 100 <- Minus
arm_3L 15114164..15114507 448..791 100 <- Minus
arm_3L 15115724..15116159 12..447 99   Minus

BO07847.complete Sequence

1543 bp (1543 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630958

> BO07847.complete
GAAGTTATCAGTCGACATGAGGCGTCGCAAAGTGCTCATCTGCTGGGCTG
CTCTGCAGGCGGGCAGCTCCATCCTCACCTGCCTGCTCCTCCTACTGACC
ACCGGCCAGAATCCGCAGCAGGTGGCAGCCGGAATAGTGCCGCCTCCGTG
GAGTGATCCCGCACAGAATCCGTGCGCCAGCATGTCCGGTGGCTGGCAGC
TGCTGTACTGGGCACCTCTGAAGAAGTGCTTCAAGATCTTCACCCTCGGC
TATCCATGTCCGGCCACCATGGAGCTCAGTCCCACCGCAGTGAGTGCCAA
GCGTAAGGATGCACCTGCAGCCGAGTGCCGCTGCCCTCCGGGAACTGCAC
TCAGTCCGCTTCACGATAATGTGTGCTACAAGCTATACGAACGGGGACCC
TGCCAACCCGAGGAGTACTTCCAACCCGTGCCGGATCAGGTCAAGAGAAC
CGCAACCGGCAACCGTTGGGGTACGTGCAAGCGACCGCTGCATTGCCCGG
AGGACATGCTCTTCTGGCCGAGGGACAACAAGTGCTATGCGAGGCATGCA
AAGGGTCCATGCAGCCGGGGTAAACTCCTCGTTCGCAACGAGGAGGGACT
GGCCGAGTGCCGTTGCGAGGATGTGGGCGACTTGGCCTCGTTCTACTATC
CGGCAGAGGAGTCTTGCTATGAGCACTACACCAAAGGACCCTGCTCGACG
CCGGGTCACATCTTCTTGCCCGGCGGTCGATGCGACTGCCAGCGGCACTT
GCCGCACTATCATGCTCCGCATCAAATGTGCTATGAGCTGGACACTCCTG
GCCCCTGTCCACCTGGTCACATCTTTCGCATACCCGACGAGGTCCAGGAG
ACAACGGGCAGCACCCTGCAGCTTTTGCCTCGTGCCCAGTGCCAGTGCAA
GGAGGGCTATGTGCCCTGGAGCGATGGCATCTGCTATCGCCTGTACACAA
GGGGTCCCTGTGGACCCAATGAGTTCCTGGTCAACGGAACCAGCTGTGTG
CGCAACTTCTGTGGCAAGAATCGCCTGTACTTCCCAGCGGAAGATTCTTG
CTACAGGATTGGATCTCAAGGCCCGTGTGCCCTACATCAGGTGGTGATCT
TCGACTTCACCGCCAGGCCATCCATCGATGGCATCTCCTACAATGGAATG
TGCGGTTGTTCCGGTGTCCTCACCAATCTGGATCAGCAGTGCACGGGAGA
TGGAGCGGATAAGGAACAGAATATATGCGAGTCCACGCCCGGAATGGTGG
AGATCAATGGGCAGTGCCACAAGCTGTATAGCCGAGGACCCTGCGGCGCG
GGTCAGTGGCTAGAGCCACTGAAATCGCAAACCACGAATGGCACCTCAAT
TTTGGTCCACGCCAGTCGGGCCAAGTGCGTCTGCCGACCGGGTTATACGC
CCTCGGAGTCGGATCAACGCGGCATGAGCAACTGCAGCGCTCCAAGTGTC
AGCCTGGCGAGGTATTTAACCAACGAGCGACTCAACTCGAAGTTTCTCAA
TGATCTGCACCTTGGTGGGACCACCGCAAGCTTTCTAGACCAT

BO07847.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG16959-RB 1512 CG16959-PB 1..1509 17..1525 7545 100 Plus
CG16959-RA 1512 CG16959-PA 1..1509 17..1525 7545 100 Plus
CG16959-RE 1470 CG16959-PE 1..1447 17..1463 7235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG16959-RB 2092 CG16959-RB 245..1754 16..1525 7550 100 Plus
CG16959-RA 2292 CG16959-RA 445..1954 16..1525 7550 100 Plus
CG16959-RE 1866 CG16959-RE 268..1715 16..1463 7240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15120216..15120950 1525..791 3675 100 Minus
3L 28110227 3L 15122624..15123055 447..16 2160 100 Minus
3L 28110227 3L 15121064..15121409 791..446 1730 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:10:44 has no hits.

BO07847.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:18 Download gff for BO07847.complete
Subject Subject Range Query Range Percent Splice Strand
CG16959-RB 1..1512 17..1529 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:47 Download gff for BO07847.complete
Subject Subject Range Query Range Percent Splice Strand
CG16959-RB 238..1754 12..1529 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:00 Download gff for BO07847.complete
Subject Subject Range Query Range Percent Splice Strand
CG16959-RA 446..1954 17..1527 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:18 Download gff for BO07847.complete
Subject Subject Range Query Range Percent Splice Strand
CG16959-RB 238..1754 12..1529 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:49 Download gff for BO07847.complete
Subject Subject Range Query Range Percent Splice Strand
CG16959-RA 446..1954 17..1527 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:49 Download gff for BO07847.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15120214..15120949 792..1527 99 <- Minus
3L 15121064..15121407 448..791 100 <- Minus
3L 15122624..15123054 17..447 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:00 Download gff for BO07847.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15113314..15114049 792..1527 99 <- Minus
arm_3L 15114164..15114507 448..791 100 <- Minus
arm_3L 15115724..15116154 17..447 100   Minus

BO07847.pep Sequence

Translation from 16 to 1543

> BO07847.pep
MRRRKVLICWAALQAGSSILTCLLLLLTTGQNPQQVAAGIVPPPWSDPAQ
NPCASMSGGWQLLYWAPLKKCFKIFTLGYPCPATMELSPTAVSAKRKDAP
AAECRCPPGTALSPLHDNVCYKLYERGPCQPEEYFQPVPDQVKRTATGNR
WGTCKRPLHCPEDMLFWPRDNKCYARHAKGPCSRGKLLVRNEEGLAECRC
EDVGDLASFYYPAEESCYEHYTKGPCSTPGHIFLPGGRCDCQRHLPHYHA
PHQMCYELDTPGPCPPGHIFRIPDEVQETTGSTLQLLPRAQCQCKEGYVP
WSDGICYRLYTRGPCGPNEFLVNGTSCVRNFCGKNRLYFPAEDSCYRIGS
QGPCALHQVVIFDFTARPSIDGISYNGMCGCSGVLTNLDQQCTGDGADKE
QNICESTPGMVEINGQCHKLYSRGPCGAGQWLEPLKSQTTNGTSILVHAS
RAKCVCRPGYTPSESDQRGMSNCSAPSVSLARYLTNERLNSKFLNDLHLG
GTTASFLDH

BO07847.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG16959-PB 503 CG16959-PB 1..503 1..503 2845 100 Plus
CG16959-PA 503 CG16959-PA 1..503 1..503 2845 100 Plus
CG16959-PE 489 CG16959-PE 1..483 1..483 2736 99.8 Plus
CG16959-PD 489 CG16959-PD 1..483 1..483 2736 99.8 Plus
CG16959-PC 489 CG16959-PC 1..483 1..483 2736 99.8 Plus