Clone Sequence Records
BO07848.3prime Sequence
815 bp (750 high quality bases) assembled on 2006-01-06
> BO07848.3prime
ATGGTCTAGAAAGCTTGCCTCCTCGTCGTCGGGCGATATTTTGGCCAGTG
TTAGCAGAATCATGGTCAGTTCTTTCCGGGAGATCTTTCCATGCTTGTCG
GTGCCAACTCCCCGCATGATGGTCTCCTCGAAAGCGGCCAGATCCTGGGC
ATCATAGTCGTCCTTCTTGACCAACTCCAAAAGGTCCTTCAAGAAGCCTT
TGAGCTCCTCATTTTCAATGGTGCCGCTATTGTCACGATCGTAGAGTGAG
AATACTTTTTCAATATCCTCTTTGGTCAACTTTGTGGCGCCCTTAAACAC
TTGGCGGCACAGGAAGTTCTCTTTAACCGGAAGCAATTTGGCCATTTCCG
ACAACTGCAGACGTCCGTCCTTGTTGGCATCGAATACTTGGAGCATAGTA
TCGGTGTACTCAATGAGCTTGTCCTCGGACACGTCGTTGATCTTTTTGGC
CTCTTTGAGCAAATCGCGCAAGAAATTTTTCAGCTCATCCGCTTCAATGT
AACCCGAATTGTCGGTGTCGTATTCACGCCAGATCTTCATGAATTCAACG
CTAGATTCCAGAGGATTATCGAAGCGGAAGAGCAAAAGGAAATTCTCCTC
CATGGGCAAAAGTTGAGCCAGCTCTCTGATATCGATTTTACCATCCTGAT
TGTCATCGTAGGCCTCCATGAAGCAGGACTTTAGCTCCTCGAGCATGGTG
TCCGTTACTGCCTCTGGACTAATGTCTGTGGCATTGGCACTCGACACGAA
CTCCCGCAGGAATCCGTCCAGCTCGGTGCCCTCAATGTAGCCATTTCCAT
CTTTATCGTAATGCG
BO07848.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6702-PA | 933 | Cbp53E-RA | 134..930 | 815..19 | 3985 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:46:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cbp53E-RB | 1400 | CG6702-RB | 455..1251 | 815..19 | 3985 | 100 | Minus |
Cbp53E-RA | 2705 | CG6702-RA | 406..1202 | 815..19 | 3985 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:46:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16994409..16994554 | 164..19 | 730 | 100 | Minus |
2R | 25286936 | 2R | 16986069..16986211 | 536..394 | 715 | 100 | Minus |
2R | 25286936 | 2R | 16984840..16984935 | 713..618 | 465 | 99 | Minus |
2R | 25286936 | 2R | 16985917..16986005 | 623..535 | 445 | 100 | Minus |
2R | 25286936 | 2R | 16984698..16984785 | 798..711 | 440 | 100 | Minus |
2R | 25286936 | 2R | 16994282..16994354 | 234..162 | 365 | 100 | Minus |
2R | 25286936 | 2R | 16994158..16994217 | 293..234 | 300 | 100 | Minus |
2R | 25286936 | 2R | 16986580..16986636 | 394..338 | 285 | 100 | Minus |
2R | 25286936 | 2R | 16986705..16986751 | 337..291 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:46:24 has no hits.
BO07848.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:50 Download gff for
BO07848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6702-PA | 134..933 | 15..815 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:09 Download gff for
BO07848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6702-PA | 134..933 | 15..815 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:11:00 Download gff for
BO07848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp53E-RA | 406..1207 | 13..815 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:21:39 Download gff for
BO07848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp53E-RA | 406..1207 | 13..815 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:21:39 Download gff for
BO07848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16984473..16984490 | 798..815 | 100 | -> | Minus |
2R | 16984699..16984784 | 712..797 | 100 | -> | Minus |
2R | 16984842..16984931 | 622..711 | 100 | -> | Minus |
2R | 16985919..16986005 | 535..621 | 100 | -> | Minus |
2R | 16986071..16986211 | 394..534 | 100 | -> | Minus |
2R | 16986581..16986636 | 338..393 | 100 | -> | Minus |
2R | 16986705..16986750 | 292..337 | 100 | -> | Minus |
2R | 16994160..16994216 | 235..291 | 100 | -> | Minus |
2R | 16994282..16994353 | 163..234 | 100 | -> | Minus |
2R | 16994411..16994559 | 13..162 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:11:00 Download gff for
BO07848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12871978..12871995 | 798..815 | 100 | -> | Minus |
arm_2R | 12872204..12872289 | 712..797 | 100 | -> | Minus |
arm_2R | 12872347..12872436 | 622..711 | 100 | -> | Minus |
arm_2R | 12873424..12873510 | 535..621 | 100 | -> | Minus |
arm_2R | 12873576..12873716 | 394..534 | 100 | -> | Minus |
arm_2R | 12874086..12874141 | 338..393 | 100 | -> | Minus |
arm_2R | 12874210..12874255 | 292..337 | 100 | -> | Minus |
arm_2R | 12881665..12881721 | 235..291 | 100 | -> | Minus |
arm_2R | 12881787..12881858 | 163..234 | 100 | -> | Minus |
arm_2R | 12881916..12882064 | 13..162 | 98 | | Minus |
BO07848.5prime Sequence
890 bp (761 high quality bases) assembled on 2006-01-06
> BO07848.5prime
GAAGTTATCAGTCGACATGGACTCTGCCGCCGCCGCCGCCGCCAAGCGCG
TTCAAATCGAGAAGGCCCACAACTTTATGCGCCAGTATCGTGATCCCGAG
TCCAGGGAACTCAAGAAGCTGTCGGCCAACCAGTTCATGGATGTCTGGGC
GCATTACGATAAAGATGGAAATGGCTACATTGAGGGCACCGAGCTGGACG
GATTCCTGCGGGAGTTCGTGTCGAGTGCCAATGCCACAGACATTAGTCCA
GAGGCAGTAACGGACACCATGCTCGAGGAGCTAAAGTCCTGCTTCATGGA
GGCCTACGATGACAATCAGGATGGTAAAATCGATATCAGAGAGCTGGCTC
AACTTTTGCCCATGGAGGAGAATTTCCTTTTGCTCTTCCGCTTCGATAAT
CCTCTGGAATCTAGCGTTGAATTCATGAAGATCTGGCGTGAATACGACAC
CGACAATTCGGGTTACATTGAAGCGGATGAGCTGAAAAATTTCTTGCGCG
ATTTGCTCAAAGAGGCCAAAAAGATCAACGACGTGTCCGAGGACAAGCTC
ATTGAGTACACCGATACTATGCTCCAAGTATTCGATGCCAACAAGGACGG
ACGTCTGCAGTTGTCGGAAATGGCCAAATTGCTTCCGGTTAAAGAGAACT
TCCTGTGCCGCCAAGTGTTTAAGGGCGCCACAAAGTTGACCAAAGAGGAT
ATTGAAAAAGTATTCTCACTCTACGATCGTGACAATAGCGGCACCATTGA
AAATGAGGAGCTCCAAGGCTTCTTGAAGGACCTTTTGGAGTTGGTCAAGA
AGGACGACTATGATGCCCAGGATCTGGCCGCTTTCGAGGAGACCATCATG
CGGGGAGTGGGCACCGACAAGCATGGAAAGATCTCCCGGA
BO07848.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6702-PA | 933 | Cbp53E-RA | 1..874 | 17..890 | 4320 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:59:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cbp53E-RB | 1400 | CG6702-RB | 322..1195 | 17..890 | 4340 | 99.8 | Plus |
Cbp53E-RA | 2705 | CG6702-RA | 273..1146 | 17..890 | 4340 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:59:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16984340..16984491 | 17..168 | 760 | 100 | Plus |
2R | 25286936 | 2R | 16986069..16986211 | 429..571 | 715 | 100 | Plus |
2R | 25286936 | 2R | 16984840..16984935 | 252..347 | 465 | 99 | Plus |
2R | 25286936 | 2R | 16985917..16986005 | 342..430 | 445 | 100 | Plus |
2R | 25286936 | 2R | 16984698..16984785 | 167..254 | 440 | 100 | Plus |
2R | 25286936 | 2R | 16994409..16994498 | 801..890 | 435 | 98.9 | Plus |
2R | 25286936 | 2R | 16994282..16994354 | 731..803 | 350 | 98.6 | Plus |
2R | 25286936 | 2R | 16994158..16994217 | 672..731 | 300 | 100 | Plus |
2R | 25286936 | 2R | 16986580..16986636 | 571..627 | 285 | 100 | Plus |
2R | 25286936 | 2R | 16986705..16986751 | 628..674 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:59:43 has no hits.
BO07848.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:52 Download gff for
BO07848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6702-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:10 Download gff for
BO07848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6702-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:08:36 Download gff for
BO07848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp53E-RA | 265..1145 | 9..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:34:44 Download gff for
BO07848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp53E-RA | 265..1145 | 9..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:34:44 Download gff for
BO07848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16984842..16984931 | 254..343 | 100 | -> | Plus |
2R | 16985919..16986005 | 344..430 | 100 | -> | Plus |
2R | 16986071..16986211 | 431..571 | 100 | -> | Plus |
2R | 16986581..16986636 | 572..627 | 100 | -> | Plus |
2R | 16986705..16986750 | 628..673 | 100 | -> | Plus |
2R | 16994160..16994216 | 674..730 | 100 | -> | Plus |
2R | 16994282..16994353 | 731..802 | 98 | -> | Plus |
2R | 16984332..16984490 | 9..167 | 97 | -> | Plus |
2R | 16984699..16984784 | 168..253 | 100 | -> | Plus |
2R | 16994411..16994497 | 803..889 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:08:36 Download gff for
BO07848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12871837..12871995 | 9..167 | 97 | -> | Plus |
arm_2R | 12872204..12872289 | 168..253 | 100 | -> | Plus |
arm_2R | 12872347..12872436 | 254..343 | 100 | -> | Plus |
arm_2R | 12873424..12873510 | 344..430 | 100 | -> | Plus |
arm_2R | 12873576..12873716 | 431..571 | 100 | -> | Plus |
arm_2R | 12874086..12874141 | 572..627 | 100 | -> | Plus |
arm_2R | 12874210..12874255 | 628..673 | 100 | -> | Plus |
arm_2R | 12881665..12881721 | 674..730 | 100 | -> | Plus |
arm_2R | 12881787..12881858 | 731..802 | 98 | -> | Plus |
arm_2R | 12881916..12882002 | 803..889 | 98 | | Plus |
BO07848.complete Sequence
964 bp (964 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630959
> BO07848.complete
GAAGTTATCAGTCGACATGGACTCTGCCGCCGCCGCCGCCGCCAAGCGCG
TTCAAATCGAGAAGGCCCACAACTTTATGCGCCAGTATCGTGATCCCGAG
TCCAGGGAACTCAAGAAGCTGTCGGCCAACCAGTTCATGGATGTCTGGGC
GCATTACGATAAAGATGGAAATGGCTACATTGAGGGCACCGAGCTGGACG
GATTCCTGCGGGAGTTCGTGTCGAGTGCCAATGCCACAGACATTAGTCCA
GAGGCAGTAACGGACACCATGCTCGAGGAGCTAAAGTCCTGCTTCATGGA
GGCCTACGATGACAATCAGGATGGTAAAATCGATATCAGAGAGCTGGCTC
AACTTTTGCCCATGGAGGAGAATTTCCTTTTGCTCTTCCGCTTCGATAAT
CCTCTGGAATCTAGCGTTGAATTCATGAAGATCTGGCGTGAATACGACAC
CGACAATTCGGGTTACATTGAAGCGGATGAGCTGAAAAATTTCTTGCGCG
ATTTGCTCAAAGAGGCCAAAAAGATCAACGACGTGTCCGAGGACAAGCTC
ATTGAGTACACCGATACTATGCTCCAAGTATTCGATGCCAACAAGGACGG
ACGTCTGCAGTTGTCGGAAATGGCCAAATTGCTTCCGGTTAAAGAGAACT
TCCTGTGCCGCCAAGTGTTTAAGGGCGCCACAAAGTTGACCAAAGAGGAT
ATTGAAAAAGTATTCTCACTCTACGATCGTGACAATAGCGGCACCATTGA
AAATGAGGAGCTCAAAGGCTTCTTGAAGGACCTTTTGGAGTTGGTCAAGA
AGGACGACTATGATGCCCAGGATCTGGCCGCTTTCGAGGAGACCATCATG
CGGGGAGTTGGCACCGACAAGCATGGAAAGATCTCCCGGAAAGAACTGAC
CATGATTCTGCTAACACTGGCCAAAATATCGCCCGACGACGAGGAGGCAA
GCTTTCTAGACCAT
BO07848.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:34:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cbp53E-RB | 933 | CG6702-PB | 1..930 | 17..946 | 4650 | 100 | Plus |
Cbp53E-RA | 933 | CG6702-PA | 1..930 | 17..946 | 4650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:34:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cbp53E-RB | 1400 | CG6702-RB | 322..1251 | 17..946 | 4650 | 100 | Plus |
Cbp53E-RA | 2705 | CG6702-RA | 273..1202 | 17..946 | 4650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:34:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16984340..16984491 | 17..168 | 760 | 100 | Plus |
2R | 25286936 | 2R | 16994409..16994554 | 801..946 | 730 | 100 | Plus |
2R | 25286936 | 2R | 16986069..16986211 | 429..571 | 715 | 100 | Plus |
2R | 25286936 | 2R | 16984840..16984935 | 252..347 | 465 | 99 | Plus |
2R | 25286936 | 2R | 16985917..16986005 | 342..430 | 445 | 100 | Plus |
2R | 25286936 | 2R | 16984698..16984785 | 167..254 | 440 | 100 | Plus |
2R | 25286936 | 2R | 16994282..16994354 | 731..803 | 365 | 100 | Plus |
2R | 25286936 | 2R | 16994158..16994217 | 672..731 | 300 | 100 | Plus |
2R | 25286936 | 2R | 16986580..16986636 | 571..627 | 285 | 100 | Plus |
2R | 25286936 | 2R | 16986705..16986751 | 628..674 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:34:21 has no hits.
BO07848.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:20 Download gff for
BO07848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp53E-RA | 1..933 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:56:56 Download gff for
BO07848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp53E-RA | 240..1169 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:55 Download gff for
BO07848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp53E-RA | 273..1202 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:20 Download gff for
BO07848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp53E-RA | 232..1174 | 9..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:44 Download gff for
BO07848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp53E-RA | 273..1202 | 17..948 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:44 Download gff for
BO07848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16984340..16984490 | 17..167 | 100 | -> | Plus |
2R | 16984699..16984784 | 168..253 | 100 | -> | Plus |
2R | 16984842..16984931 | 254..343 | 100 | -> | Plus |
2R | 16985919..16986005 | 344..430 | 100 | -> | Plus |
2R | 16986071..16986211 | 431..571 | 100 | -> | Plus |
2R | 16986705..16986750 | 628..673 | 100 | -> | Plus |
2R | 16986581..16986636 | 572..627 | 100 | -> | Plus |
2R | 16994160..16994216 | 674..730 | 100 | -> | Plus |
2R | 16994282..16994353 | 731..802 | 100 | -> | Plus |
2R | 16994411..16994554 | 803..948 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:55 Download gff for
BO07848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12871845..12871995 | 17..167 | 100 | -> | Plus |
arm_2R | 12872204..12872289 | 168..253 | 100 | -> | Plus |
arm_2R | 12872347..12872436 | 254..343 | 100 | -> | Plus |
arm_2R | 12873424..12873510 | 344..430 | 100 | -> | Plus |
arm_2R | 12873576..12873716 | 431..571 | 100 | -> | Plus |
arm_2R | 12874086..12874141 | 572..627 | 100 | -> | Plus |
arm_2R | 12874210..12874255 | 628..673 | 100 | -> | Plus |
arm_2R | 12881665..12881721 | 674..730 | 100 | -> | Plus |
arm_2R | 12881787..12881858 | 731..802 | 100 | -> | Plus |
arm_2R | 12881916..12882059 | 803..948 | 98 | | Plus |
BO07848.pep Sequence
Translation from 16 to 964
> BO07848.pep
MDSAAAAAAKRVQIEKAHNFMRQYRDPESRELKKLSANQFMDVWAHYDKD
GNGYIEGTELDGFLREFVSSANATDISPEAVTDTMLEELKSCFMEAYDDN
QDGKIDIRELAQLLPMEENFLLLFRFDNPLESSVEFMKIWREYDTDNSGY
IEADELKNFLRDLLKEAKKINDVSEDKLIEYTDTMLQVFDANKDGRLQLS
EMAKLLPVKENFLCRQVFKGATKLTKEDIEKVFSLYDRDNSGTIENEELK
GFLKDLLELVKKDDYDAQDLAAFEETIMRGVGTDKHGKISRKELTMILLT
LAKISPDDEEASFLDH
BO07848.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cbp53E-PB | 310 | CG6702-PB | 1..310 | 1..310 | 1583 | 100 | Plus |
Cbp53E-PA | 310 | CG6702-PA | 1..310 | 1..310 | 1583 | 100 | Plus |