Clone BO07848 Report

Search the DGRC for BO07848

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:78
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCbp53E-RA
Protein status:BO07848.pep: validated full length
Sequenced Size:964

Clone Sequence Records

BO07848.3prime Sequence

815 bp (750 high quality bases) assembled on 2006-01-06

> BO07848.3prime
ATGGTCTAGAAAGCTTGCCTCCTCGTCGTCGGGCGATATTTTGGCCAGTG
TTAGCAGAATCATGGTCAGTTCTTTCCGGGAGATCTTTCCATGCTTGTCG
GTGCCAACTCCCCGCATGATGGTCTCCTCGAAAGCGGCCAGATCCTGGGC
ATCATAGTCGTCCTTCTTGACCAACTCCAAAAGGTCCTTCAAGAAGCCTT
TGAGCTCCTCATTTTCAATGGTGCCGCTATTGTCACGATCGTAGAGTGAG
AATACTTTTTCAATATCCTCTTTGGTCAACTTTGTGGCGCCCTTAAACAC
TTGGCGGCACAGGAAGTTCTCTTTAACCGGAAGCAATTTGGCCATTTCCG
ACAACTGCAGACGTCCGTCCTTGTTGGCATCGAATACTTGGAGCATAGTA
TCGGTGTACTCAATGAGCTTGTCCTCGGACACGTCGTTGATCTTTTTGGC
CTCTTTGAGCAAATCGCGCAAGAAATTTTTCAGCTCATCCGCTTCAATGT
AACCCGAATTGTCGGTGTCGTATTCACGCCAGATCTTCATGAATTCAACG
CTAGATTCCAGAGGATTATCGAAGCGGAAGAGCAAAAGGAAATTCTCCTC
CATGGGCAAAAGTTGAGCCAGCTCTCTGATATCGATTTTACCATCCTGAT
TGTCATCGTAGGCCTCCATGAAGCAGGACTTTAGCTCCTCGAGCATGGTG
TCCGTTACTGCCTCTGGACTAATGTCTGTGGCATTGGCACTCGACACGAA
CTCCCGCAGGAATCCGTCCAGCTCGGTGCCCTCAATGTAGCCATTTCCAT
CTTTATCGTAATGCG

BO07848.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6702-PA 933 Cbp53E-RA 134..930 815..19 3985 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
Cbp53E-RB 1400 CG6702-RB 455..1251 815..19 3985 100 Minus
Cbp53E-RA 2705 CG6702-RA 406..1202 815..19 3985 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16994409..16994554 164..19 730 100 Minus
2R 25286936 2R 16986069..16986211 536..394 715 100 Minus
2R 25286936 2R 16984840..16984935 713..618 465 99 Minus
2R 25286936 2R 16985917..16986005 623..535 445 100 Minus
2R 25286936 2R 16984698..16984785 798..711 440 100 Minus
2R 25286936 2R 16994282..16994354 234..162 365 100 Minus
2R 25286936 2R 16994158..16994217 293..234 300 100 Minus
2R 25286936 2R 16986580..16986636 394..338 285 100 Minus
2R 25286936 2R 16986705..16986751 337..291 235 100 Minus
Blast to na_te.dros performed on 2015-02-09 19:46:24 has no hits.

BO07848.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:50 Download gff for BO07848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6702-PA 134..933 15..815 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:09 Download gff for BO07848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6702-PA 134..933 15..815 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:11:00 Download gff for BO07848.3prime
Subject Subject Range Query Range Percent Splice Strand
Cbp53E-RA 406..1207 13..815 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:21:39 Download gff for BO07848.3prime
Subject Subject Range Query Range Percent Splice Strand
Cbp53E-RA 406..1207 13..815 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:21:39 Download gff for BO07848.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16984473..16984490 798..815 100 -> Minus
2R 16984699..16984784 712..797 100 -> Minus
2R 16984842..16984931 622..711 100 -> Minus
2R 16985919..16986005 535..621 100 -> Minus
2R 16986071..16986211 394..534 100 -> Minus
2R 16986581..16986636 338..393 100 -> Minus
2R 16986705..16986750 292..337 100 -> Minus
2R 16994160..16994216 235..291 100 -> Minus
2R 16994282..16994353 163..234 100 -> Minus
2R 16994411..16994559 13..162 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:11:00 Download gff for BO07848.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12871978..12871995 798..815 100 -> Minus
arm_2R 12872204..12872289 712..797 100 -> Minus
arm_2R 12872347..12872436 622..711 100 -> Minus
arm_2R 12873424..12873510 535..621 100 -> Minus
arm_2R 12873576..12873716 394..534 100 -> Minus
arm_2R 12874086..12874141 338..393 100 -> Minus
arm_2R 12874210..12874255 292..337 100 -> Minus
arm_2R 12881665..12881721 235..291 100 -> Minus
arm_2R 12881787..12881858 163..234 100 -> Minus
arm_2R 12881916..12882064 13..162 98   Minus

BO07848.5prime Sequence

890 bp (761 high quality bases) assembled on 2006-01-06

> BO07848.5prime
GAAGTTATCAGTCGACATGGACTCTGCCGCCGCCGCCGCCGCCAAGCGCG
TTCAAATCGAGAAGGCCCACAACTTTATGCGCCAGTATCGTGATCCCGAG
TCCAGGGAACTCAAGAAGCTGTCGGCCAACCAGTTCATGGATGTCTGGGC
GCATTACGATAAAGATGGAAATGGCTACATTGAGGGCACCGAGCTGGACG
GATTCCTGCGGGAGTTCGTGTCGAGTGCCAATGCCACAGACATTAGTCCA
GAGGCAGTAACGGACACCATGCTCGAGGAGCTAAAGTCCTGCTTCATGGA
GGCCTACGATGACAATCAGGATGGTAAAATCGATATCAGAGAGCTGGCTC
AACTTTTGCCCATGGAGGAGAATTTCCTTTTGCTCTTCCGCTTCGATAAT
CCTCTGGAATCTAGCGTTGAATTCATGAAGATCTGGCGTGAATACGACAC
CGACAATTCGGGTTACATTGAAGCGGATGAGCTGAAAAATTTCTTGCGCG
ATTTGCTCAAAGAGGCCAAAAAGATCAACGACGTGTCCGAGGACAAGCTC
ATTGAGTACACCGATACTATGCTCCAAGTATTCGATGCCAACAAGGACGG
ACGTCTGCAGTTGTCGGAAATGGCCAAATTGCTTCCGGTTAAAGAGAACT
TCCTGTGCCGCCAAGTGTTTAAGGGCGCCACAAAGTTGACCAAAGAGGAT
ATTGAAAAAGTATTCTCACTCTACGATCGTGACAATAGCGGCACCATTGA
AAATGAGGAGCTCCAAGGCTTCTTGAAGGACCTTTTGGAGTTGGTCAAGA
AGGACGACTATGATGCCCAGGATCTGGCCGCTTTCGAGGAGACCATCATG
CGGGGAGTGGGCACCGACAAGCATGGAAAGATCTCCCGGA

BO07848.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6702-PA 933 Cbp53E-RA 1..874 17..890 4320 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
Cbp53E-RB 1400 CG6702-RB 322..1195 17..890 4340 99.8 Plus
Cbp53E-RA 2705 CG6702-RA 273..1146 17..890 4340 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16984340..16984491 17..168 760 100 Plus
2R 25286936 2R 16986069..16986211 429..571 715 100 Plus
2R 25286936 2R 16984840..16984935 252..347 465 99 Plus
2R 25286936 2R 16985917..16986005 342..430 445 100 Plus
2R 25286936 2R 16984698..16984785 167..254 440 100 Plus
2R 25286936 2R 16994409..16994498 801..890 435 98.9 Plus
2R 25286936 2R 16994282..16994354 731..803 350 98.6 Plus
2R 25286936 2R 16994158..16994217 672..731 300 100 Plus
2R 25286936 2R 16986580..16986636 571..627 285 100 Plus
2R 25286936 2R 16986705..16986751 628..674 235 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:59:43 has no hits.

BO07848.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:52 Download gff for BO07848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6702-PA 1..873 17..889 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:10 Download gff for BO07848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6702-PA 1..873 17..889 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:08:36 Download gff for BO07848.5prime
Subject Subject Range Query Range Percent Splice Strand
Cbp53E-RA 265..1145 9..889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:34:44 Download gff for BO07848.5prime
Subject Subject Range Query Range Percent Splice Strand
Cbp53E-RA 265..1145 9..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:34:44 Download gff for BO07848.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16984842..16984931 254..343 100 -> Plus
2R 16985919..16986005 344..430 100 -> Plus
2R 16986071..16986211 431..571 100 -> Plus
2R 16986581..16986636 572..627 100 -> Plus
2R 16986705..16986750 628..673 100 -> Plus
2R 16994160..16994216 674..730 100 -> Plus
2R 16994282..16994353 731..802 98 -> Plus
2R 16984332..16984490 9..167 97 -> Plus
2R 16984699..16984784 168..253 100 -> Plus
2R 16994411..16994497 803..889 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:08:36 Download gff for BO07848.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12871837..12871995 9..167 97 -> Plus
arm_2R 12872204..12872289 168..253 100 -> Plus
arm_2R 12872347..12872436 254..343 100 -> Plus
arm_2R 12873424..12873510 344..430 100 -> Plus
arm_2R 12873576..12873716 431..571 100 -> Plus
arm_2R 12874086..12874141 572..627 100 -> Plus
arm_2R 12874210..12874255 628..673 100 -> Plus
arm_2R 12881665..12881721 674..730 100 -> Plus
arm_2R 12881787..12881858 731..802 98 -> Plus
arm_2R 12881916..12882002 803..889 98   Plus

BO07848.complete Sequence

964 bp (964 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630959

> BO07848.complete
GAAGTTATCAGTCGACATGGACTCTGCCGCCGCCGCCGCCGCCAAGCGCG
TTCAAATCGAGAAGGCCCACAACTTTATGCGCCAGTATCGTGATCCCGAG
TCCAGGGAACTCAAGAAGCTGTCGGCCAACCAGTTCATGGATGTCTGGGC
GCATTACGATAAAGATGGAAATGGCTACATTGAGGGCACCGAGCTGGACG
GATTCCTGCGGGAGTTCGTGTCGAGTGCCAATGCCACAGACATTAGTCCA
GAGGCAGTAACGGACACCATGCTCGAGGAGCTAAAGTCCTGCTTCATGGA
GGCCTACGATGACAATCAGGATGGTAAAATCGATATCAGAGAGCTGGCTC
AACTTTTGCCCATGGAGGAGAATTTCCTTTTGCTCTTCCGCTTCGATAAT
CCTCTGGAATCTAGCGTTGAATTCATGAAGATCTGGCGTGAATACGACAC
CGACAATTCGGGTTACATTGAAGCGGATGAGCTGAAAAATTTCTTGCGCG
ATTTGCTCAAAGAGGCCAAAAAGATCAACGACGTGTCCGAGGACAAGCTC
ATTGAGTACACCGATACTATGCTCCAAGTATTCGATGCCAACAAGGACGG
ACGTCTGCAGTTGTCGGAAATGGCCAAATTGCTTCCGGTTAAAGAGAACT
TCCTGTGCCGCCAAGTGTTTAAGGGCGCCACAAAGTTGACCAAAGAGGAT
ATTGAAAAAGTATTCTCACTCTACGATCGTGACAATAGCGGCACCATTGA
AAATGAGGAGCTCAAAGGCTTCTTGAAGGACCTTTTGGAGTTGGTCAAGA
AGGACGACTATGATGCCCAGGATCTGGCCGCTTTCGAGGAGACCATCATG
CGGGGAGTTGGCACCGACAAGCATGGAAAGATCTCCCGGAAAGAACTGAC
CATGATTCTGCTAACACTGGCCAAAATATCGCCCGACGACGAGGAGGCAA
GCTTTCTAGACCAT

BO07848.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
Cbp53E-RB 933 CG6702-PB 1..930 17..946 4650 100 Plus
Cbp53E-RA 933 CG6702-PA 1..930 17..946 4650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
Cbp53E-RB 1400 CG6702-RB 322..1251 17..946 4650 100 Plus
Cbp53E-RA 2705 CG6702-RA 273..1202 17..946 4650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16984340..16984491 17..168 760 100 Plus
2R 25286936 2R 16994409..16994554 801..946 730 100 Plus
2R 25286936 2R 16986069..16986211 429..571 715 100 Plus
2R 25286936 2R 16984840..16984935 252..347 465 99 Plus
2R 25286936 2R 16985917..16986005 342..430 445 100 Plus
2R 25286936 2R 16984698..16984785 167..254 440 100 Plus
2R 25286936 2R 16994282..16994354 731..803 365 100 Plus
2R 25286936 2R 16994158..16994217 672..731 300 100 Plus
2R 25286936 2R 16986580..16986636 571..627 285 100 Plus
2R 25286936 2R 16986705..16986751 628..674 235 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:34:21 has no hits.

BO07848.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:20 Download gff for BO07848.complete
Subject Subject Range Query Range Percent Splice Strand
Cbp53E-RA 1..933 17..950 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:56:56 Download gff for BO07848.complete
Subject Subject Range Query Range Percent Splice Strand
Cbp53E-RA 240..1169 17..948 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:55 Download gff for BO07848.complete
Subject Subject Range Query Range Percent Splice Strand
Cbp53E-RA 273..1202 17..948 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:20 Download gff for BO07848.complete
Subject Subject Range Query Range Percent Splice Strand
Cbp53E-RA 232..1174 9..952 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:44 Download gff for BO07848.complete
Subject Subject Range Query Range Percent Splice Strand
Cbp53E-RA 273..1202 17..948 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:44 Download gff for BO07848.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16984340..16984490 17..167 100 -> Plus
2R 16984699..16984784 168..253 100 -> Plus
2R 16984842..16984931 254..343 100 -> Plus
2R 16985919..16986005 344..430 100 -> Plus
2R 16986071..16986211 431..571 100 -> Plus
2R 16986705..16986750 628..673 100 -> Plus
2R 16986581..16986636 572..627 100 -> Plus
2R 16994160..16994216 674..730 100 -> Plus
2R 16994282..16994353 731..802 100 -> Plus
2R 16994411..16994554 803..948 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:55 Download gff for BO07848.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12871845..12871995 17..167 100 -> Plus
arm_2R 12872204..12872289 168..253 100 -> Plus
arm_2R 12872347..12872436 254..343 100 -> Plus
arm_2R 12873424..12873510 344..430 100 -> Plus
arm_2R 12873576..12873716 431..571 100 -> Plus
arm_2R 12874086..12874141 572..627 100 -> Plus
arm_2R 12874210..12874255 628..673 100 -> Plus
arm_2R 12881665..12881721 674..730 100 -> Plus
arm_2R 12881787..12881858 731..802 100 -> Plus
arm_2R 12881916..12882059 803..948 98   Plus

BO07848.pep Sequence

Translation from 16 to 964

> BO07848.pep
MDSAAAAAAKRVQIEKAHNFMRQYRDPESRELKKLSANQFMDVWAHYDKD
GNGYIEGTELDGFLREFVSSANATDISPEAVTDTMLEELKSCFMEAYDDN
QDGKIDIRELAQLLPMEENFLLLFRFDNPLESSVEFMKIWREYDTDNSGY
IEADELKNFLRDLLKEAKKINDVSEDKLIEYTDTMLQVFDANKDGRLQLS
EMAKLLPVKENFLCRQVFKGATKLTKEDIEKVFSLYDRDNSGTIENEELK
GFLKDLLELVKKDDYDAQDLAAFEETIMRGVGTDKHGKISRKELTMILLT
LAKISPDDEEASFLDH

BO07848.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
Cbp53E-PB 310 CG6702-PB 1..310 1..310 1583 100 Plus
Cbp53E-PA 310 CG6702-PA 1..310 1..310 1583 100 Plus