Clone BO07849 Report

Search the DGRC for BO07849

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:78
Well:49
Vector:pDNR-Dual
Associated Gene/Transcriptl(3)82Fd-RD
Protein status:BO07849.pep: validated full length
Sequenced Size:2068

Clone Sequence Records

BO07849.3prime Sequence

890 bp (823 high quality bases) assembled on 2006-01-06

> BO07849.3prime
ATGGTCTAGAAAGCTTGCCCTTGAGAATACTTTCGAAAATACACTTTGGT
TGGAGTCACCCGTGTTGGGCGCCGAGTCTGTGTCTCCCGACTTGTTCAGG
CTTCCACTGCCCACGCCGCCGGGCGGCACGGCACCACCCTCCCCAGTCAA
GCCCTCCACCCAGGTCAGGGGGTATGAGAGACGTTTAAGCATCTTGTTCT
TCTTGTCGGCCTGCTTGTCTGTGACAGCCAGTGCAGCCGACTGGGCCTGA
GCCTGCTGGGCGGCCTCGTCGTCGACGCTGAAGCTCACGCTTGAGGTCTT
CTTACGGACGCCCCCTGCGCCTCCTGTGCCGGCGTCGAGACTCTGGCCGA
GGATGGTGCTGCGCGGCGGGGACTCGCTGAAGTGCGTCGGCACAATGGTT
TTCGGTGGTACCCAGTCGGAGCTGAGGACAATGTCCGCGTCGCTGTAGAC
GGTTTTTTTTGGTATCGGCTGTACGTTGGGAACGGGCTCGCGGATATCGA
TGCCCGAGTCGTAGCACGACTGCTTGGACAGCTGCTCCAAGTGCTCCAGA
TCAATGCCCGAGGGAGGCAGAGGAACGACGGCGGAGGCGGGTGCGACGGC
AGCGGCAGCTGCAGCAGCAGCCACAGGGGGCTGGCTAAGCGGCACGCCGC
TGACCGAACTATTGGCCGAGTGCGGATCCTGGACTCGTGCGCCACTGTCT
ACGGTAACGTTTGACTCGTTGTCGCCCTCATCTTCCGAGGATCGGTCTTT
GCTCGGAATGGCCCAGTGGTGATCCAACAAACTCTTGCGCCGCTCCTCGA
GGGTGGAGCGAGTGCTGGAGAGGCCCAGGCCGGCCTTCTTGTCTTCATCG
TCTAGAGCGTCAGTCTTAGCGCTATCTTTGGCTCCATAGA

BO07849.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG32464-PD 2037 l(3)82Fd-RD 1170..2034 883..19 4325 100 Minus
CG32464-PO 3078 l(3)82Fd-RO 1110..1973 883..20 4320 100 Minus
CG32464-PP 3945 l(3)82Fd-RP 1845..2708 883..20 4320 100 Minus
CG32464-PN 3813 l(3)82Fd-RN 1845..2708 883..20 4320 100 Minus
CG32464-PM 3039 l(3)82Fd-RM 1071..1934 883..20 4320 100 Minus
CG32464-PB 3813 l(3)82Fd-RB 1845..2708 883..20 4320 100 Minus
CG32464-PJ 3813 l(3)82Fd-RJ 1845..2708 883..20 4320 100 Minus
CG32464-PL 3813 l(3)82Fd-RL 1845..2708 883..20 4320 100 Minus
CG32464-PK 3168 l(3)82Fd-RK 1110..1973 883..20 4320 100 Minus
CG32464-PF 2610 l(3)82Fd-RF 642..1505 883..20 4320 100 Minus
CG32464-PG 3102 l(3)82Fd-RG 1274..1997 743..20 3620 100 Minus
CG32464-PG 3102 l(3)82Fd-RG 1110..1250 883..743 705 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
mtd-RW 6314 CG32464-RW 3116..3987 890..20 4335 99.9 Minus
mtd-RV 5689 CG32464-RV 2491..3362 890..20 4335 99.9 Minus
mtd-RU 5169 CG32464-RU 2193..3064 890..20 4335 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5294306..5294856 193..743 2755 100 Plus
3R 32079331 3R 5294061..5294236 19..194 880 100 Plus
3R 32079331 3R 5295641..5295781 743..883 705 100 Plus
Blast to na_te.dros performed 2015-02-12 15:38:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2314..2369 571..626 109 66.1 Plus

BO07849.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:53 Download gff for BO07849.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32464-PD 1163..2037 16..889 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:12 Download gff for BO07849.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32464-PD 1163..2037 16..889 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:08:08 Download gff for BO07849.3prime
Subject Subject Range Query Range Percent Splice Strand
mtd-RU 2194..3064 20..889 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:20:00 Download gff for BO07849.3prime
Subject Subject Range Query Range Percent Splice Strand
mtd-RU 2194..3064 20..889 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:20:00 Download gff for BO07849.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5294306..5294855 193..742 100 <- Plus
3R 5294061..5294234 19..192 100 <- Plus
3R 5295641..5295788 743..889 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:08:08 Download gff for BO07849.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1119783..1119956 19..192 100 <- Plus
arm_3R 1120028..1120577 193..742 100 <- Plus
arm_3R 1121363..1121510 743..889 99   Plus

BO07849.5prime Sequence

877 bp (832 high quality bases) assembled on 2006-01-06

> BO07849.5prime
GAAGTTATCAGTCGACATGGAGCACGCCGGCGCGCCAATCTCCACGTCCG
CCTCGAACATAGCCACCGTGCTGGAGGACGGCGAGAACCAGCAGCTGCCG
CCCTTGACGGGATCGGGACCTAGTCGCCAGAGATCTCTGAGGGATCGGCT
CAAGGACGGCATCACCGGCAGCTTCTCCTGGCAGAGCAAATCGCGCAGCG
TGGATCACGGCCTTGCGGCTCCATTCGACTTGGACTCGCTCCGCTCCAAA
GTGGAGCAGCGCTTCGAGAGCGTCGACAAATTATCAAGGCAAAAGTCTTC
ATTGCCCACCATACCCACCATTTCCTACACCGTGGGCAATCGCGACACCC
TGACCTCCGTGGCCGCCCGGTTCGACACCACGCCCTCGGAGCTGACCCAC
CTCAACCGGCTGAACAGCTCCTTCATCTATCCGGGCCAGCAGCTGCTGGT
GCCGGACAAGAGCGCCAAGGACGACGCCTCCAGCAGCTCCACCCACGACG
CGGACGGTGCCAGCCTGTCCGGCAAATCGAGTCCGGTCGAGCGCAAGTTG
TCCGGCGACGAGAGCCGCGAGAAAGACATACTCGAGGGCCTGCGCCCCGG
ATCCCCAAAACCGGGACACATCGAGCGCGTGGGCGGCAGTAGCCAGCAGC
AGCAGGCGGAGGAGGAGGCCAACAAAAGCGACGATCCGGTGATCACACAG
CGCTTCCTCAAGATCAATGTGCGCCACATCACGGACGGACAGGGCGTGGT
GGGCGGCGTCCTGCTGGTCACGCCCAACGCCGTTATGTTCGATCCCAACG
TCAGCGATCCCCTGGTCATCGAGCACGGCCCGGAGAGCTACGGCGTCATT
GCGCCCATGGAGCTGGTGGTCAACGCC

BO07849.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG32464-PD 2037 l(3)82Fd-RD 1..861 17..877 4305 100 Plus
CG32464-PO 3078 l(3)82Fd-RO 108..801 184..877 3470 100 Plus
CG32464-PP 3945 l(3)82Fd-RP 843..1536 184..877 3470 100 Plus
CG32464-PN 3813 l(3)82Fd-RN 843..1536 184..877 3470 100 Plus
CG32464-PG 3102 l(3)82Fd-RG 108..801 184..877 3470 100 Plus
CG32464-PB 3813 l(3)82Fd-RB 843..1536 184..877 3470 100 Plus
CG32464-PJ 3813 l(3)82Fd-RJ 843..1536 184..877 3470 100 Plus
CG32464-PL 3813 l(3)82Fd-RL 843..1536 184..877 3470 100 Plus
CG32464-PK 3168 l(3)82Fd-RK 108..801 184..877 3470 100 Plus
CG32464-PM 3039 l(3)82Fd-RM 172..762 287..877 2955 100 Plus
CG32464-PF 2610 l(3)82Fd-RF 30..333 574..877 1520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
mtd-RZ 3738 CG32464-RZ 1592..2453 16..877 4310 100 Plus
mtd-RX 5976 CG32464-RX 1592..2453 16..877 4310 100 Plus
mtd-RW 6314 CG32464-RW 1954..2815 16..877 4310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5296334..5296637 877..574 1520 100 Minus
3R 32079331 3R 5298202..5298489 575..288 1440 100 Minus
3R 32079331 3R 5334404..5334572 184..16 845 100 Minus
3R 32079331 3R 5299469..5299573 288..184 525 100 Minus
Blast to na_te.dros performed on 2015-02-09 19:46:37 has no hits.

BO07849.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:54 Download gff for BO07849.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32464-PD 1..861 17..877 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:13 Download gff for BO07849.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32464-PD 1..861 17..877 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:11:02 Download gff for BO07849.5prime
Subject Subject Range Query Range Percent Splice Strand
mtd-RW 1950..2815 13..877 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:21:40 Download gff for BO07849.5prime
Subject Subject Range Query Range Percent Splice Strand
mtd-RW 1950..2815 13..877 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:21:40 Download gff for BO07849.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5296334..5296635 576..877 100 <- Minus
3R 5298202..5298489 288..575 100 <- Minus
3R 5299470..5299573 184..287 100 <- Minus
3R 5334405..5334576 13..183 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:11:02 Download gff for BO07849.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1122056..1122357 576..877 100 <- Minus
arm_3R 1123924..1124211 288..575 100 <- Minus
arm_3R 1125192..1125295 184..287 100 <- Minus
arm_3R 1160127..1160298 13..183 99   Minus

BO07849.complete Sequence

2068 bp (2068 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630960

> BO07849.complete
GAAGTTATCAGTCGACATGGAGCACGCCGGCGCGCCAATCTCCACGTCCG
CCTCGAACATAGCCACCGTGCTGGAGGACGGCGAGAACCAGCAGCTGCCG
CCCTTGACGGGATCGGGACCTAGTCGCCAGAGATCTCTGAGGGATCGGCT
CAAGGACGGCATCACCGGCAGCTTCTCCTGGCAGAGCAAATCGCGCAGCG
TGGATCACGGCCTTGCGGCTCCATTCGACTTGGACTCGCTCCGCTCCAAA
GTGGAGCAGCGCTTCGAGAGCGTCGACAAATTATCAAGGCAAAAGTCTTC
ATTGCCCACCATACCCACCATTTCCTACACCGTGGGCAATCGCGACACCC
TGACCTCCGTGGCCGCCCGGTTCGACACCACGCCCTCGGAGCTGACCCAC
CTCAACCGGCTGAACAGCTCCTTCATCTATCCGGGCCAGCAGCTGCTGGT
GCCGGACAAGAGCGCCAAGGACGACGCCTCCAGCAGCTCCACCCACGACG
CGGACGGTGCCAGCCTGTCCGGCAAATCGAGTCCGGTCGAGCGCAAGTTG
TCCGGCGACGAGAGCCGCGAGAAAGACATACTCGAGGGCCTGCGCCCCGG
ATCCCCAAAACCGGGACACATCGAGCGCGTGGGCGGCAGTAGCCAGCAGC
AGCAGGCGGAGGAGGAGGCCAACAAAAGCGACGATCCGGTGATCACACAG
CGCTTCCTCAAGATCAATGTGCGCCACATCACGGACGGACAGGGCGTGGT
GGGCGGCGTCCTGCTGGTCACGCCCAACGCCGTTATGTTCGATCCCAACG
TCAGCGATCCCCTGGTCATCGAGCACGGCCCGGAGAGCTACGGCGTCATT
GCGCCCATGGAGCTGGTGGTCAACGCCGCCATCTTCCACGACATTGCGCA
CATGCGAGTGGCCGGAGGAGCAGGTCAGGGCCTGAACTCCGCCTCGGGAG
ACGCGGAGAAACCGGAAATCTACTATCCCAAACCAGTATTAGTCGAAGAA
GACTCCAAGGAGCTACCCGAGCAGCAGTCGCTGCTGGGCGAAGACGGTAA
TAAGCGCTTAGATGCAGAAATAGGGTCGCTGGAAATCGCTGACGACCAAG
AGTCGCTTTGCTCCAGCACTGGACGCGATGGCGACGCGTTTCCCAAAGCC
TTCGACCGCGAACGTGTGGAGGACTCTTCTATGGAAGCCAAAGATAGCGC
TAAGACTGACGCTCTAGACGATGAAGACAAGAAGGCCGGCCTGGGCCTCT
CCAGCACTCGCTCCACCCTCGAGGAGCGGCGCAAGAGTTTGTTGGATCAC
CACTGGGCCATTCCGAGCAAAGACCGATCCTCGGAAGATGAGGGCGACAA
CGAGTCAAACGTTACCGTAGACAGTGGCGCACGAGTCCAGGATCCGCACT
CGGCCAATAGTTCGGTCAGCGGCGTGCCGCTTAGCCAGCCCCCTGTGGCT
GCTGCTGCAGCTGCCGCTGCCGTCGCACCCGCCTCCGCCGTCGTTCCTCT
GCCTCCCTCGGGCATTGATCTGGAGCACTTGGAGCAGCTGTCCAAGCAGT
CGTGCTACGACTCGGGCATCGATATCCGCGAGCCCGTTCCCAACGTACAG
CCGATACCAAAAAAAACCGTCTACAGCGACGCGGACATTGTCCTCAGCTC
CGACTGGGTACCACCGAAAACCATTGTGCCGACGCACTTCAGCGAGTCCC
CGCCGCGCAGCACCATCCTCGGCCAGAGTCTCGACGCCGGCACAGGAGGC
GCAGGGGGCGTCCGTAAGAAGACCTCAAGCGTGAGCTTCAGCGTCGACGA
CGAGGCCGCCCAGCAGGCTCAGGCCCAGTCGGCTGCACTGGCTGTCACAG
ACAAGCAGGCCGACAAGAAGAACAAGATGCTTAAACGTCTCTCATACCCC
CTGACCTGGGTGGAGGGCTTGACTGGGGAGGGTGGTGCCGTGCCGCCCGG
CGGCGTGGGCAGTGGAAGCCTGAACAAGTCGGGAGACACAGACTCGGCGC
CCAACACGGGTGACTCCAACCAAAGTGTATTTTCGAAAGTATTCTCAAGG
GCAAGCTTTCTAGACCAT

BO07849.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:31:37
Subject Length Description Subject Range Query Range Score Percent Strand
mtd-RW 3543 CG32464-PW 183..2216 16..2049 10170 100 Plus
mtd-RT 3321 CG32464-PT 183..2216 16..2049 10170 100 Plus
mtd-RS 3321 CG32464-PS 183..2216 16..2049 10170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
mtd-RW 6314 CG32464-RW 1954..3987 16..2049 10170 100 Plus
mtd-RT 5170 CG32464-RT 1032..3065 16..2049 10170 100 Plus
mtd-RS 4651 CG32464-RS 513..2546 16..2049 10170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:31:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5294306..5294856 1876..1326 2755 100 Minus
3R 32079331 3R 5296147..5296637 1064..574 2455 100 Minus
3R 32079331 3R 5298202..5298489 575..288 1440 100 Minus
3R 32079331 3R 5294061..5294236 2050..1875 880 100 Minus
3R 32079331 3R 5334404..5334572 184..16 845 100 Minus
3R 32079331 3R 5295641..5295797 1326..1170 785 100 Minus
3R 32079331 3R 5295856..5295964 1172..1064 545 100 Minus
3R 32079331 3R 5299469..5299573 288..184 525 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:31:36 has no hits.

BO07849.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:08 Download gff for BO07849.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)82Fd-RT 179..2216 13..2049 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:54:47 Download gff for BO07849.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)82Fd-RD 319..2352 17..2052 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:45 Download gff for BO07849.complete
Subject Subject Range Query Range Percent Splice Strand
mtd-RS 514..2548 17..2052 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:08 Download gff for BO07849.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)82Fd-RD 314..2352 13..2050 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:19:54 Download gff for BO07849.complete
Subject Subject Range Query Range Percent Splice Strand
mtd-RS 514..2548 17..2052 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:19:54 Download gff for BO07849.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5299470..5299573 184..287 100 <- Minus
3R 5334405..5334571 17..183 100   Minus
3R 5296147..5296635 576..1064 100 <- Minus
3R 5294058..5294234 1877..2052 98 <- Minus
3R 5294306..5294855 1327..1876 100 <- Minus
3R 5295641..5295795 1172..1326 100 <- Minus
3R 5295857..5295963 1065..1171 100 <- Minus
3R 5298202..5298489 288..575 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:45 Download gff for BO07849.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1121869..1122357 576..1064 100 <- Minus
arm_3R 1123924..1124211 288..575 100 <- Minus
arm_3R 1125192..1125295 184..287 100 <- Minus
arm_3R 1119780..1119956 1877..2052 98 <- Minus
arm_3R 1120028..1120577 1327..1876 100 <- Minus
arm_3R 1121363..1121517 1172..1326 100 <- Minus
arm_3R 1121579..1121685 1065..1171 100 <- Minus
arm_3R 1160127..1160293 17..183 100   Minus

BO07849.pep Sequence

Translation from 16 to 2068

> BO07849.pep
MEHAGAPISTSASNIATVLEDGENQQLPPLTGSGPSRQRSLRDRLKDGIT
GSFSWQSKSRSVDHGLAAPFDLDSLRSKVEQRFESVDKLSRQKSSLPTIP
TISYTVGNRDTLTSVAARFDTTPSELTHLNRLNSSFIYPGQQLLVPDKSA
KDDASSSSTHDADGASLSGKSSPVERKLSGDESREKDILEGLRPGSPKPG
HIERVGGSSQQQQAEEEANKSDDPVITQRFLKINVRHITDGQGVVGGVLL
VTPNAVMFDPNVSDPLVIEHGPESYGVIAPMELVVNAAIFHDIAHMRVAG
GAGQGLNSASGDAEKPEIYYPKPVLVEEDSKELPEQQSLLGEDGNKRLDA
EIGSLEIADDQESLCSSTGRDGDAFPKAFDRERVEDSSMEAKDSAKTDAL
DDEDKKAGLGLSSTRSTLEERRKSLLDHHWAIPSKDRSSEDEGDNESNVT
VDSGARVQDPHSANSSVSGVPLSQPPVAAAAAAAAVAPASAVVPLPPSGI
DLEHLEQLSKQSCYDSGIDIREPVPNVQPIPKKTVYSDADIVLSSDWVPP
KTIVPTHFSESPPRSTILGQSLDAGTGGAGGVRKKTSSVSFSVDDEAAQQ
AQAQSAALAVTDKQADKKNKMLKRLSYPLTWVEGLTGEGGAVPPGGVGSG
SLNKSGDTDSAPNTGDSNQSVFSKVFSRASFLDH

BO07849.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:36:42
Subject Length Description Subject Range Query Range Score Percent Strand
mtd-PT 1106 CG32464-PT 62..741 1..680 3448 99.9 Plus
mtd-PS 1106 CG32464-PS 62..741 1..680 3448 99.9 Plus
mtd-PW 1180 CG32464-PW 62..738 1..677 3440 100 Plus
mtd-PZ 686 CG32464-PZ 1..686 1..678 3426 98.8 Plus
mtd-PX 1127 CG32464-PX 1..685 1..677 3421 98.8 Plus