Clone Sequence Records
BO07851.3prime Sequence
944 bp (874 high quality bases) assembled on 2006-01-06
> BO07851.3prime
ATGGTCTAGAAAGCTTGCGTAGAGGCGCAGGTACTGCAGCGCCTGGCGAC
TCTGCATGGGATACAGCTCGCCCACGTTGTAGAGGAGGTCCACCACGTGT
GTGGGTCGCAGCATCCGCCAGGGCATGTACTTTAGCGTCTTCTTGTCGCA
GTGCACATCCTTCTCCGGCTCCAGGGGCAGTGGCAATTCGTTGTACAGCA
TGCGACCGTCCACACTGCGTTGCAAGGTGCATGGAAGACCGATCTGGTCG
GCCAAGCCCTTGAAGAGAATCGCCCGCTCGAACTGGCATCCACTGCGCAC
CATGCCCAGTGGAATGAAGTTGGTGTGCAGCACGTGGCGCAGTTCTTGCA
GGTGACAGCGGACCGTGTTCCGGCAGCACTCCTCCGTTGAGTTCAGGTCC
AGAATCTTAAGATTCTCGCTCATCACGGCGTTCACCGCCTGGGCGATCAG
CTTGCTCCGCTTGGCCACGTTCTCAAAGTCAATTGTGCGACGCACGCGCT
CGGGATTCTCCACCAAGCCGTGCATCGCTAGTGTCTGATTGAGTGCCTCC
AAATACTGCGGCAAGTTGTTATCTCCAGGTCGCTTACAGTAGCCCCAACC
CTGATCTCCAGGCAAGTCCGTGATCGTGCTCAAGCAGCGCAGCGGCACGG
CGATCACATCGTTCTGATTCGGCTTGGGACGATCAAAGTTCATTACCAGG
ACGGCATCCAAAGGCGAGCAATCGTTGCGCAGAATGTCCTGAAATTTGCG
GAAGTCCTCAAACTTCCTGCGCGACACATAAAAGTCCTTGCCGGCCGTGA
TGTCCGTGAAGGTGAGGCAGTTGCGAATGGCGAACTTCATAGTGGGACAC
TTGGAAAAGATGCTCTCGATGGCCGGGCCCCAGGTGGAAATGCAGAAGGC
GTGCTTTCTGAAATCCAACAAAACTTCCATGATCCCACGGTCGA
BO07851.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13326-PA | 2604 | CG13326-RA | 1714..2601 | 906..19 | 4415 | 99.8 | Minus |
| CG13326-PA | 2604 | CG13326-RA | 1676..1710 | 944..910 | 175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:02:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13326-RA | 2778 | CG13326-RA | 1759..2684 | 944..19 | 4570 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:02:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13129605..13130112 | 19..526 | 2540 | 100 | Plus |
| 2R | 25286936 | 2R | 13130167..13130563 | 526..922 | 1925 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:02:41 has no hits.
BO07851.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:57 Download gff for
BO07851.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13326-PA | 1677..2604 | 18..943 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:18 Download gff for
BO07851.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13326-PA | 1677..2604 | 18..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:57:22 Download gff for
BO07851.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13326-RA | 1760..2689 | 11..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:49:23 Download gff for
BO07851.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13326-RA | 1760..2689 | 11..943 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:49:23 Download gff for
BO07851.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13129600..13130111 | 11..525 | 99 | <- | Plus |
| 2R | 13130167..13130563 | 526..922 | 99 | <- | Plus |
| 2R | 13130621..13130641 | 923..943 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:57:22 Download gff for
BO07851.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9017105..9017616 | 11..525 | 99 | <- | Plus |
| arm_2R | 9017672..9018068 | 526..922 | 99 | <- | Plus |
| arm_2R | 9018126..9018146 | 923..943 | 100 | | Plus |
BO07851.5prime Sequence
928 bp (709 high quality bases) assembled on 2006-01-06
> BO07851.5prime
GAAGTTATCAGTCGACATGTCGCGAATTTCGAAGCGCGTCTATGAGGCGA
AGTCCACTTACCCGGATCGCACCAAGTCCGAGGAGAAATCCTTCACGGAA
GTGAGTGTGCCGATCAAGAAGCTGGATACGGCGCTGCTCCTCCTGAGTTC
AAAGGAGGAGTGTGTCCTGCTGACCATTTTCAGCCACATAACGGACTTTG
CCCGCCGCCAGGATGTGAATGTGCTGGAACTGAAGGCCCATCGCTTGTTG
GAGCTGTTGCTGGAGAAGGATTTGTTCATCGCGTCGGAGAACACGATGAT
CCGCCGCTTTGCTCTGTACTTGCTCACTGCTCTGCTGGACAACACGGACA
TGTCCACCTATGAGCCAGAACAAGCGGATCAGATCCTGGAGCTGGCGTGC
AGATTCTACATGAAAGAGGTGGACGACTTCTGCATCGAGTACTTGACGTA
TATACTCAATGTGTGCCTGAAGGATCCCCAGATGGCACATGGCATTGTCG
AGGCCACCGAATTCCTGGAGAAATTTAAGTTGGTGTTCATAAGTTCGGAG
AATCCGGACACCGTGTTCAACTCGATTGAGGCACTGCATAGGATGCTACT
GGTCCAGAGTGCAGATCAAATGCTGGATTTCACAACACAGCCGGATTTTC
CGGTAGATCGTATTATCTGTGAGGTTACCAACGAGTTCCAGGAGATCCGC
AAGGCGGCCCTTAAAACATTGAAGACTCTGCTGGCGGACACTGGCGACGA
TAGCGTCTTCGAGGCACTGCATCGTTGCTACTTCGTGCTGGAGCAGTTGG
TCAAGGTGTTTTGCGAGAGTCCACAGGGCCGGAGGCTGCCGATGTCATCG
AGGTTCTGGCCACAGCTCTGCGATCCGAGAAGATGACCAAGCTGTTCTTC
GAGCAGAACCTCTTCGACCAGGTTGTCG
BO07851.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13326-PA | 2604 | CG13326-RA | 1..809 | 17..825 | 4045 | 100 | Plus |
| CG13326-PA | 2604 | CG13326-RA | 810..913 | 825..928 | 520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:03:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13326-RA | 2778 | CG13326-RA | 82..996 | 15..928 | 4550 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:03:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13131460..13132374 | 928..15 | 4525 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:03:05 has no hits.
BO07851.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:58 Download gff for
BO07851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13326-PA | 1..913 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:19 Download gff for
BO07851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13326-PA | 1..913 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:46:40 Download gff for
BO07851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13326-RA | 75..996 | 8..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:53:51 Download gff for
BO07851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13326-RA | 75..996 | 8..928 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:53:51 Download gff for
BO07851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13131460..13132378 | 8..928 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:46:40 Download gff for
BO07851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9018965..9019883 | 8..928 | 99 | | Minus |
BO07851.complete Sequence
2635 bp assembled on 2007-10-05
GenBank Submission: FJ630961
> BO07851.complete
GAAGTTATCAGTCGACATGTCGCGAATTTCGAAGCGCGTCTATGAGGCGA
AGTCCACTTACCCGGATCGCACCAAGTCCGAGGAGAAATCCTTCACGGAA
GTGAGTGTGCCGATCAAGAAGCTGGATACGGCGCTGCTCCTCCTGAGTTC
AAAGGAGGAGTGTGTCCTGCTGACCATTTTCAGCCACATAACGGACTTTG
CCCGCCGCCAGGATGTGAATGTGCTGGAACTGAAGGCCCATCGCTTGTTG
GAGCTGTTGCTGGAGAAGGATTTGTTCATCGCGTCGGAGAACACGATGAT
CCGCCGCTTTGCTCTGTACTTGCTCACTGCTCTGCTGGACAACACGGACA
TGTCCACCTATGAGCCAGAACAAGCGGATCAGATCCTGGAGCTGGCGTGC
AGATTCTACATGAAAGAGGTGGACGACTTCTGCATCGAGTACTTGACGTA
TATACTCAATGTGTGCCTGAAGGATCCCCAGATGGCACATGGCATTGTCG
AGGCCACCGAATTCCTGGAGAAATTTAAGTTGGTGTTCATAAGTTCGGAG
AATCCGGACACCGTGTTCAACTCGATTGAGGCACTGCATAGGATGCTACT
GGTCCAGAGTGCAGATCAAATGCTGGATTTCACAACACAGCCGGATTTTC
CGGTAGATCGTATTATCTGTGAGGTTACCAACGAGTTCCAGGAGATCCGC
AAGGCGGCCCTTAAAACATTGAAGACTCTGCTGGCGGACACTGGCGACGA
TAGCGTCTTCGAGGCACTGCATCGTTGCTACTTCGTGCTGGAGCAGTTGG
TCAAGGTGTTTTGCGAGAGTCCACAAGGGCCGGAGGCTGCCGATGTCATC
GAGGTTCTGGCCACAGCTCTGCGATCCGAGAAGATGACCAAGCTGTTCTT
CGAGCAGAACCTCTTCGACCAGGTTGTCGAGCAGGTGCGCAATCACATGG
ACCTCATGCCGCTGGAGATGCGCTGCACCATCATATCGATTTTCGCTGAG
ACGGCTCAGTACGAGCAGTTCCTACCAAGGATGCACAAGGCCGAAATCGC
AGACATGTTCCTCACCTGTTTAATGCAGAACAAGCCGGCTCCGGCTGCCT
ACGTCATCCAGGGACTTCATCGCATGTCACACCATCCGGAAGCGCTGCGG
CGAATTGTGGCCGCCTATCAGGAGGGCGCAATTCGCAAACTGGTGGCCAT
CCTCATGTCGCCGGACGTGGCCATCAAGGCTCGGGAGCAGGCGGGAGAGT
TTCTGTCCCGTCTCCTTGTGGCCGCCTTCCGCGAGACAGCTGCCCAGTTG
CAAGAGCAGGACATCGCTGTTGTTCTCACCGCGGTCATTGCGCAGGGACA
GCCCACTCTGTCCATTGATCTCATCCTATTGCTGCTGACGATCATCGAGA
GCCTGGCCCAGAAAGAGGAATACCGCACAATCCTCGGCGAGTATAGTTCA
CTTACCGAGCAGCTTGCCCAGCTTCTAATGCGTTCCTTTGCCCACTCCAT
CCTGGTGAACAACATCTTCCGGTGCCTGTGCACTCTAATCGACGAGGCTC
CAGTGCGTGAGACTTTGCTGGCCAACTACATAGTCTCATCCATGAAGCGG
GCCCTCAAGTCCCTGTCCAATCTGGTGAAGACCTCGGTGACCAACTTCAT
TCTACAGACCACGCGCTTTAACGAGTTCATAGATGCCTACATCGACCGTG
GGATCATGGAAGTTTTGTTGGATTTCCAGAAGCACGCCTTCTGCATTTCC
ACCTGGGGCCCGGCCATCGAGAGCATCCTTTCCAAGTGTCCCACTATGAA
GTTCGCCATTCGCAACTGCCTCACCTTCACGGACATCACGGCCGGCAAGG
ACTTTTATGTGTCGCGCAGGAAGTTTGAGGACTTCCGCAAATTTCAGGAC
ATTCTGCGCAACGATTGCTCGCCTTTGGATGCCGTCCTGGTAATGAACTT
TGATCGTCCCAAGCCGAATCAGAACGATGTGATCGCCGTGCCGCTGCGCT
GCTTGAGCACGATCACGGACTTGCCTGGAGATCAGGGTTGGGGCTACTGT
AAGCGACCTGGAGATAACAACTTGCCGCAGTATTTGGAGGCACTCAATCA
GACACTAGCGATGCACGGCTTGGTGGAGAATCCCGAGCGCGTGCGTCGCA
CAATTGACTTTGAGAACGTGGCCAAGCGGAGCAAGCTGATCGCCCAGGCG
GTGAACGCCGTGATGAGCGAGAATCTTAAGATTCTGGACCTGAACTCAAC
GGAGGAGTGCTGCCGGAACACGGTCCGCTGTCACCTGCAAGAACTGCGCC
ACGTGCTGCACACCAACTTCATTCCACTGGGCATGGTGCGCAGTGGATGC
CAGTTCGAGCGGGCGATTCTCTTCAAGGGCTTGGCCGACCAGATCGGTCT
TCCATGCACCTTGCAACGCAGTGTGGACGGTCGCATGCTGTACAACGAAT
TGCCACTGCCCCTGGAGCCGGAGAAGGATGTGCACTGCGACAAGAAGACG
CTAAAGTACATGCCCTGGCGGATGCTGCGACCCACACACGTGGTGGACCT
CCTCTACAACGTGGGCGAGCTGTATCCCATGCAGAGTCGCCAGGCGCTGC
AGTACCTGCGCCTCTACGCAAGCTTTCTAGACCAT
BO07851.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:29:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13326-RA | 2604 | CG13326-PA | 1..2601 | 17..2617 | 13005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:29:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13326-RA | 2778 | CG13326-RA | 82..2684 | 15..2617 | 13015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:29:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13130909..13132374 | 1480..15 | 7330 | 100 | Minus |
| 2R | 25286936 | 2R | 13129605..13130112 | 2617..2110 | 2540 | 100 | Minus |
| 2R | 25286936 | 2R | 13130167..13130563 | 2110..1714 | 1985 | 100 | Minus |
| 2R | 25286936 | 2R | 13130621..13130854 | 1713..1480 | 1170 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:29:23 has no hits.
BO07851.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:16 Download gff for
BO07851.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13326-RA | 1..2604 | 17..2618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:18:31 Download gff for
BO07851.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13326-RA | 75..2689 | 8..2625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:59 Download gff for
BO07851.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13326-RA | 84..2684 | 17..2619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:16 Download gff for
BO07851.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13326-RA | 75..2689 | 8..2625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:38 Download gff for
BO07851.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13326-RA | 84..2684 | 17..2619 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:38 Download gff for
BO07851.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13129603..13130111 | 2111..2619 | 99 | <- | Minus |
| 2R | 13130167..13130563 | 1714..2110 | 100 | <- | Minus |
| 2R | 13130621..13130853 | 1481..1713 | 100 | <- | Minus |
| 2R | 13130909..13132372 | 17..1480 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:59 Download gff for
BO07851.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9017108..9017616 | 2111..2619 | 99 | <- | Minus |
| arm_2R | 9017672..9018068 | 1714..2110 | 100 | <- | Minus |
| arm_2R | 9018126..9018358 | 1481..1713 | 100 | <- | Minus |
| arm_2R | 9018414..9019877 | 17..1480 | 100 | | Minus |
BO07851.pep Sequence
Translation from 16 to 2635
> BO07851.pep
MSRISKRVYEAKSTYPDRTKSEEKSFTEVSVPIKKLDTALLLLSSKEECV
LLTIFSHITDFARRQDVNVLELKAHRLLELLLEKDLFIASENTMIRRFAL
YLLTALLDNTDMSTYEPEQADQILELACRFYMKEVDDFCIEYLTYILNVC
LKDPQMAHGIVEATEFLEKFKLVFISSENPDTVFNSIEALHRMLLVQSAD
QMLDFTTQPDFPVDRIICEVTNEFQEIRKAALKTLKTLLADTGDDSVFEA
LHRCYFVLEQLVKVFCESPQGPEAADVIEVLATALRSEKMTKLFFEQNLF
DQVVEQVRNHMDLMPLEMRCTIISIFAETAQYEQFLPRMHKAEIADMFLT
CLMQNKPAPAAYVIQGLHRMSHHPEALRRIVAAYQEGAIRKLVAILMSPD
VAIKAREQAGEFLSRLLVAAFRETAAQLQEQDIAVVLTAVIAQGQPTLSI
DLILLLLTIIESLAQKEEYRTILGEYSSLTEQLAQLLMRSFAHSILVNNI
FRCLCTLIDEAPVRETLLANYIVSSMKRALKSLSNLVKTSVTNFILQTTR
FNEFIDAYIDRGIMEVLLDFQKHAFCISTWGPAIESILSKCPTMKFAIRN
CLTFTDITAGKDFYVSRRKFEDFRKFQDILRNDCSPLDAVLVMNFDRPKP
NQNDVIAVPLRCLSTITDLPGDQGWGYCKRPGDNNLPQYLEALNQTLAMH
GLVENPERVRRTIDFENVAKRSKLIAQAVNAVMSENLKILDLNSTEECCR
NTVRCHLQELRHVLHTNFIPLGMVRSGCQFERAILFKGLADQIGLPCTLQ
RSVDGRMLYNELPLPLEPEKDVHCDKKTLKYMPWRMLRPTHVVDLLYNVG
ELYPMQSRQALQYLRLYASFLDH
BO07851.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:23:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13326-PA | 867 | CG13326-PA | 1..867 | 1..867 | 4428 | 100 | Plus |
