Clone Sequence Records
BO07852.5prime Sequence
901 bp (821 high quality bases) assembled on 2006-01-06
> BO07852.5prime
GAAGTTATCAGTCGACATGCTGCTGGTGCGTCAGCTATTCGGGGCTTCGG
CCAACTCCTGGGCACGCGCCCTCATCATATTCGTACTGGCCTGGATCGGG
TTGGTCTACGTGTTCGTGGTCAAGCTGACCAATACTCAGGGCCAGCAGGC
GGCCGGGGAGAGTGAGCTGAACGCCCGTCGCATATCACAGGCGCTCCAGA
TGCTGGAGCACACGAGACAGCGCAATGAGGAGCTTAAACAGCTCATCGAC
GAGTTGATGAGTGACCAACTGGACAAGCAGAGCGCAATGAAACTGGTGCA
AAGGCTGGAGAACGATGCGCTAAATCCAAAGCTGGCGCCCGAGGTCGCCG
GCCCGGAACCAGAATCCATGTTCGAGTCCGCCCCCGCTGATCTGCGCGGT
TGGAATAATGTGGCCGAGGGAGCGCCCAATGATCTGGAGGCCGGTGTTCC
GGATCATGGCGAATTCGAGCCCAGCCTAGAGTACGAGTTCACGCGCAGAC
GCATCCAGACGAACATCGGTGAGATCTGGAATTTCTTCAGCAGTGAACTG
GGCAAAGTGCGTAAGGCAGTGGCCGCCGGCCATGCGAGTGCCGATTTGGA
GGAGTCCATTAACCAGGTGCTGCTCCAAGGCGCCGAGCACAAGCGCTCCC
TGCTGAGCGATATGGAGCGGATGCGTCAGTCCGATGGCTACGAGGCCTGG
CGACACAAGGAGGCACGGGATTTGAGCGATTTGGTACAGCGGCGCCTGCA
CCATCTACAGAATCCCAGTGATTGCCAGAATGCTCGCAAGCTGGTCTGTA
AGCTCAACAAGGGCTGTGGCTACNGCTGGCAACTGCACCATGTGGTGTAT
TGCTTTATAGTGGCCTACGCCACCGAGCGGACGCTCATCTTAAAATCCCG
C
BO07852.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2448-PA | 1860 | FucT6-RA | 1..885 | 17..901 | 4381 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:32:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FucT6-RA | 2795 | CG2448-RA | 504..1389 | 16..901 | 4404 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:32:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11708244..11708796 | 812..260 | 2765 | 100 | Minus |
X | 23542271 | X | 11709203..11709448 | 261..16 | 1230 | 100 | Minus |
X | 23542271 | X | 11708046..11708137 | 901..810 | 434 | 97.8 | Minus |
Blast to na_te.dros performed on 2015-02-04 20:32:17 has no hits.
BO07852.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:59 Download gff for
BO07852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FucT6-PA | 1..885 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:23 Download gff for
BO07852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2448-PA | 1..885 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:26:37 Download gff for
BO07852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FucT6-RA | 501..1389 | 13..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:51:08 Download gff for
BO07852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FucT6-RA | 501..1389 | 13..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:51:08 Download gff for
BO07852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11708046..11708135 | 812..901 | 97 | <- | Minus |
X | 11708245..11708794 | 262..811 | 100 | <- | Minus |
X | 11709203..11709451 | 13..261 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:26:37 Download gff for
BO07852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11602079..11602168 | 812..901 | 97 | <- | Minus |
arm_X | 11602278..11602827 | 262..811 | 100 | <- | Minus |
arm_X | 11603236..11603484 | 13..261 | 99 | | Minus |
BO07852.3prime Sequence
446 bp (367 high quality bases) assembled on 2006-01-06
> BO07852.3prime
ATGGTCTAGAAAGCTTGCAATGCCCGCATAGAGAGGCAGCTTGGCGGTGT
CCACCTTCTCCTCCACCTTGAACGAGGGGAATAGGCCGCCCTGGTTGGTG
CGGGTATTCTTGCCCTTGGAATTGCCATCCCAATGGTTACCAGCCACCGA
GACGAGGTCACCAACACGCAGCTGTAGATCCTCGTGCGTGCGCGGCTTGT
GGGCGATAACGACGCGGCGATTGTGCGCATTCTGGCCACCGTAGTAGTAT
ATGTCGTCCAGCGACTTGAACCGATGCGCTGCATCCGGATACATCGTCTG
CATTATCTCGTAGGCCACGCGACACACCTGCGACGAGAAGGTGCACACCA
GATGATCGGACATGGAAAGCAGGTGGATATCCAGAATGATCCCCGTCANG
GGCGTGTCCGTGTATCGTGTGGATACNGACGGCATGCGCGCCACCT
BO07852.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2448-PA | 1860 | FucT6-RA | 1483..1857 | 393..19 | 1875 | 100 | Minus |
CG2448-PA | 1860 | FucT6-RA | 1430..1472 | 446..404 | 171 | 95.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:36:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FucT6-RA | 2795 | CG2448-RA | 1934..2361 | 446..19 | 2039 | 98.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:36:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11707009..11707436 | 19..446 | 2043 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:36:49 has no hits.
BO07852.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:59 Download gff for
BO07852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FucT6-PA | 1430..1860 | 18..446 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:21 Download gff for
BO07852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2448-PA | 1430..1860 | 18..446 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:05:12 Download gff for
BO07852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FucT6-RA | 1934..2366 | 11..446 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:51:08 Download gff for
BO07852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FucT6-RA | 1934..2366 | 11..446 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:51:08 Download gff for
BO07852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11707004..11707436 | 11..446 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:05:12 Download gff for
BO07852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11601037..11601469 | 11..446 | 97 | | Plus |
BO07852.complete Sequence
1891 bp (1891 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630962
> BO07852.complete
GAAGTTATCAGTCGACATGCTGCTGGTGCGTCAGCTATTCGGGGCTTCGG
CCAACTCCTGGGCACGCGCCCTCATCATATTCGTACTGGCCTGGATCGGG
TTGGTCTACGTGTTCGTGGTCAAGCTGACCAATACTCAGGGCCAGCAGGC
GGCCGGGGAGAGTGAGCTGAACGCCCGTCGCATATCACAGGCGCTCCAGA
TGCTGGAGCACACGAGACAGCGCAATGAGGAGCTTAAACAGCTCATCGAC
GAGTTGATGAGTGACCAACTGGACAAGCAGAGCGCAATGAAACTGGTGCA
AAGGCTGGAGAACGATGCGCTAAATCCAAAGCTGGCGCCCGAGGTCGCCG
GCCCGGAACCAGAATCCATGTTCGAGTCCGCCCCCGCTGATCTGCGCGGT
TGGAATAATGTGGCCGAGGGAGCGCCCAATGATCTGGAGGCCGGTGTTCC
GGATCATGGCGAATTCGAGCCCAGCCTAGAGTACGAGTTCACGCGCAGAC
GCATCCAGACGAACATCGGTGAGATCTGGAATTTCTTCAGCAGTGAACTG
GGCAAAGTGCGTAAGGCAGTGGCCGCCGGCCATGCGAGTGCCGATTTGGA
GGAGTCCATTAACCAGGTGCTGCTCCAAGGCGCCGAGCACAAGCGCTCCC
TGCTGAGCGATATGGAGCGGATGCGTCAGTCCGATGGCTACGAGGCCTGG
CGACACAAGGAGGCACGGGATTTGAGCGATTTGGTACAGCGGCGCCTGCA
CCATCTACAGAATCCCAGTGATTGCCAGAATGCTCGCAAGCTGGTCTGTA
AGCTCAACAAGGGCTGTGGCTACGGCTGCCAACTGCACCATGTGGTGTAT
TGCTTTATAGTGGCCTACGCCACCGAGCGGACGCTCATCTTAAAATCCCG
CGGATGGCGGTATCACAAGGGCGGCTGGGAGGAGGTGTTCCAACCGGTGT
CCAACAGCTGCCATGATGCGGGCACCGCCAACACATACAATTGGCCGGGC
AAGCCGAACACCCAGGTGCTGGTGTTGCCCATCATTGACTCGCTGATGCC
GAGACCGCCGTACCTGCCGCTCGCCGTTCCCGAGGATCTGGCGCCGAGAC
TTAAGCGTCTGCATGGAGACCCCATCGTTTGGTGGGTGGGTCAGTTCCTT
AAGTATTTGCTCCGACCGCAACCAACGACGCGGGATTTTCTTACCTCTGG
CATGCGCAATTTGGGTTGGGAGCGTCCCATTGTTGGCGTTCATGTCCGTC
GCACGGACAAAGTGGGCACAGAAGCGGCCTGCCACAGTGTGGAGGAGTAT
ATGACCTATGTCGAGGACTACTACCGCACGCTGGAGGTAAACGGCAGCAC
TGTGGCTCGCCGGATTTTCCTCGCATCGGATGATGCCCAGGTTATTGAGG
AGGCGCGCCGAAAGTACCCGCAGTACCAGATCATTGGTGATCCGGAGGTG
GCGCGCATGGCGTCCGTATCCACACGATACACGGACACCGCCCTGAACGG
GATCATTCTGGATATCCACCTGCTTTCCATGTCCGATCATCTGGTGTGCA
CCTTCTCGTCGCAGGTGTGTCGCGTGGCCTACGAGATAATGCAGACGATG
TATCCGGATGCAGCGCATCGGTTCAAGTCGCTGGACGACATATACTACTA
CGGTGGCCAGAATGCGCACAATCGCCGCGTCGTTATCGCCCACAAGCCGC
GCACGCACGAGGATCTACAGCTGCGTGTTGGTGACCTCGTCTCGGTGGCT
GGTAACCATTGGGATGGCAATTCCAAGGGCAAGAATACCCGCACCAACCA
GGGCGGCCTATTCCCCTCGTTCAAGGTGGAGGAGAAGGTGGACACCGCCA
AGCTGCCTCTCTATGCGGGCATTGCAAGCTTTCTAGACCAT
BO07852.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:25:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FucT6-RA | 1860 | CG2448-PA | 1..1857 | 17..1873 | 9285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:25:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FucT6-RA | 2795 | CG2448-RA | 504..2361 | 16..1873 | 9290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:25:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11707009..11707646 | 1873..1236 | 3190 | 100 | Minus |
X | 23542271 | X | 11708244..11708796 | 812..260 | 2765 | 100 | Minus |
X | 23542271 | X | 11707711..11708137 | 1236..810 | 2135 | 100 | Minus |
X | 23542271 | X | 11709203..11709448 | 261..16 | 1230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:25:07 has no hits.
BO07852.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:56 Download gff for
BO07852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FucT6-RA | 1..1860 | 17..1874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:36 Download gff for
BO07852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FucT6-RA | 500..2365 | 13..1881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:11 Download gff for
BO07852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FucT6-RA | 505..2361 | 17..1875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:57 Download gff for
BO07852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FucT6-RA | 500..2365 | 13..1881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:29 Download gff for
BO07852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FucT6-RA | 505..2361 | 17..1875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:29 Download gff for
BO07852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11707007..11707645 | 1237..1875 | 99 | <- | Minus |
X | 11707711..11708135 | 812..1236 | 100 | <- | Minus |
X | 11708245..11708794 | 262..811 | 100 | <- | Minus |
X | 11709203..11709447 | 17..261 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:11 Download gff for
BO07852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11601040..11601678 | 1237..1875 | 99 | <- | Minus |
arm_X | 11601744..11602168 | 812..1236 | 100 | <- | Minus |
arm_X | 11602278..11602827 | 262..811 | 100 | <- | Minus |
arm_X | 11603236..11603480 | 17..261 | 100 | | Minus |
BO07852.pep Sequence
Translation from 16 to 1891
> BO07852.pep
MLLVRQLFGASANSWARALIIFVLAWIGLVYVFVVKLTNTQGQQAAGESE
LNARRISQALQMLEHTRQRNEELKQLIDELMSDQLDKQSAMKLVQRLEND
ALNPKLAPEVAGPEPESMFESAPADLRGWNNVAEGAPNDLEAGVPDHGEF
EPSLEYEFTRRRIQTNIGEIWNFFSSELGKVRKAVAAGHASADLEESINQ
VLLQGAEHKRSLLSDMERMRQSDGYEAWRHKEARDLSDLVQRRLHHLQNP
SDCQNARKLVCKLNKGCGYGCQLHHVVYCFIVAYATERTLILKSRGWRYH
KGGWEEVFQPVSNSCHDAGTANTYNWPGKPNTQVLVLPIIDSLMPRPPYL
PLAVPEDLAPRLKRLHGDPIVWWVGQFLKYLLRPQPTTRDFLTSGMRNLG
WERPIVGVHVRRTDKVGTEAACHSVEEYMTYVEDYYRTLEVNGSTVARRI
FLASDDAQVIEEARRKYPQYQIIGDPEVARMASVSTRYTDTALNGIILDI
HLLSMSDHLVCTFSSQVCRVAYEIMQTMYPDAAHRFKSLDDIYYYGGQNA
HNRRVVIAHKPRTHEDLQLRVGDLVSVAGNHWDGNSKGKNTRTNQGGLFP
SFKVEEKVDTAKLPLYAGIASFLDH
BO07852.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:37:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FucT6-PA | 619 | CG2448-PA | 1..619 | 1..619 | 3267 | 100 | Plus |