Clone BO07852 Report

Search the DGRC for BO07852

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:78
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptFucT6-RA
Protein status:BO07852.pep: validated full length
Sequenced Size:1891

Clone Sequence Records

BO07852.5prime Sequence

901 bp (821 high quality bases) assembled on 2006-01-06

> BO07852.5prime
GAAGTTATCAGTCGACATGCTGCTGGTGCGTCAGCTATTCGGGGCTTCGG
CCAACTCCTGGGCACGCGCCCTCATCATATTCGTACTGGCCTGGATCGGG
TTGGTCTACGTGTTCGTGGTCAAGCTGACCAATACTCAGGGCCAGCAGGC
GGCCGGGGAGAGTGAGCTGAACGCCCGTCGCATATCACAGGCGCTCCAGA
TGCTGGAGCACACGAGACAGCGCAATGAGGAGCTTAAACAGCTCATCGAC
GAGTTGATGAGTGACCAACTGGACAAGCAGAGCGCAATGAAACTGGTGCA
AAGGCTGGAGAACGATGCGCTAAATCCAAAGCTGGCGCCCGAGGTCGCCG
GCCCGGAACCAGAATCCATGTTCGAGTCCGCCCCCGCTGATCTGCGCGGT
TGGAATAATGTGGCCGAGGGAGCGCCCAATGATCTGGAGGCCGGTGTTCC
GGATCATGGCGAATTCGAGCCCAGCCTAGAGTACGAGTTCACGCGCAGAC
GCATCCAGACGAACATCGGTGAGATCTGGAATTTCTTCAGCAGTGAACTG
GGCAAAGTGCGTAAGGCAGTGGCCGCCGGCCATGCGAGTGCCGATTTGGA
GGAGTCCATTAACCAGGTGCTGCTCCAAGGCGCCGAGCACAAGCGCTCCC
TGCTGAGCGATATGGAGCGGATGCGTCAGTCCGATGGCTACGAGGCCTGG
CGACACAAGGAGGCACGGGATTTGAGCGATTTGGTACAGCGGCGCCTGCA
CCATCTACAGAATCCCAGTGATTGCCAGAATGCTCGCAAGCTGGTCTGTA
AGCTCAACAAGGGCTGTGGCTACNGCTGGCAACTGCACCATGTGGTGTAT
TGCTTTATAGTGGCCTACGCCACCGAGCGGACGCTCATCTTAAAATCCCG
C

BO07852.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG2448-PA 1860 FucT6-RA 1..885 17..901 4381 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
FucT6-RA 2795 CG2448-RA 504..1389 16..901 4404 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11708244..11708796 812..260 2765 100 Minus
X 23542271 X 11709203..11709448 261..16 1230 100 Minus
X 23542271 X 11708046..11708137 901..810 434 97.8 Minus
Blast to na_te.dros performed on 2015-02-04 20:32:17 has no hits.

BO07852.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:59 Download gff for BO07852.5prime
Subject Subject Range Query Range Percent Splice Strand
FucT6-PA 1..885 17..901 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:23 Download gff for BO07852.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2448-PA 1..885 17..901 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:26:37 Download gff for BO07852.5prime
Subject Subject Range Query Range Percent Splice Strand
FucT6-RA 501..1389 13..901 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:51:08 Download gff for BO07852.5prime
Subject Subject Range Query Range Percent Splice Strand
FucT6-RA 501..1389 13..901 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:51:08 Download gff for BO07852.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11708046..11708135 812..901 97 <- Minus
X 11708245..11708794 262..811 100 <- Minus
X 11709203..11709451 13..261 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:26:37 Download gff for BO07852.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11602079..11602168 812..901 97 <- Minus
arm_X 11602278..11602827 262..811 100 <- Minus
arm_X 11603236..11603484 13..261 99   Minus

BO07852.3prime Sequence

446 bp (367 high quality bases) assembled on 2006-01-06

> BO07852.3prime
ATGGTCTAGAAAGCTTGCAATGCCCGCATAGAGAGGCAGCTTGGCGGTGT
CCACCTTCTCCTCCACCTTGAACGAGGGGAATAGGCCGCCCTGGTTGGTG
CGGGTATTCTTGCCCTTGGAATTGCCATCCCAATGGTTACCAGCCACCGA
GACGAGGTCACCAACACGCAGCTGTAGATCCTCGTGCGTGCGCGGCTTGT
GGGCGATAACGACGCGGCGATTGTGCGCATTCTGGCCACCGTAGTAGTAT
ATGTCGTCCAGCGACTTGAACCGATGCGCTGCATCCGGATACATCGTCTG
CATTATCTCGTAGGCCACGCGACACACCTGCGACGAGAAGGTGCACACCA
GATGATCGGACATGGAAAGCAGGTGGATATCCAGAATGATCCCCGTCANG
GGCGTGTCCGTGTATCGTGTGGATACNGACGGCATGCGCGCCACCT

BO07852.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG2448-PA 1860 FucT6-RA 1483..1857 393..19 1875 100 Minus
CG2448-PA 1860 FucT6-RA 1430..1472 446..404 171 95.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
FucT6-RA 2795 CG2448-RA 1934..2361 446..19 2039 98.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11707009..11707436 19..446 2043 98.4 Plus
Blast to na_te.dros performed on 2015-02-13 05:36:49 has no hits.

BO07852.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:30:59 Download gff for BO07852.3prime
Subject Subject Range Query Range Percent Splice Strand
FucT6-PA 1430..1860 18..446 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:21 Download gff for BO07852.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2448-PA 1430..1860 18..446 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:05:12 Download gff for BO07852.3prime
Subject Subject Range Query Range Percent Splice Strand
FucT6-RA 1934..2366 11..446 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:51:08 Download gff for BO07852.3prime
Subject Subject Range Query Range Percent Splice Strand
FucT6-RA 1934..2366 11..446 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:51:08 Download gff for BO07852.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11707004..11707436 11..446 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:05:12 Download gff for BO07852.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11601037..11601469 11..446 97   Plus

BO07852.complete Sequence

1891 bp (1891 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630962

> BO07852.complete
GAAGTTATCAGTCGACATGCTGCTGGTGCGTCAGCTATTCGGGGCTTCGG
CCAACTCCTGGGCACGCGCCCTCATCATATTCGTACTGGCCTGGATCGGG
TTGGTCTACGTGTTCGTGGTCAAGCTGACCAATACTCAGGGCCAGCAGGC
GGCCGGGGAGAGTGAGCTGAACGCCCGTCGCATATCACAGGCGCTCCAGA
TGCTGGAGCACACGAGACAGCGCAATGAGGAGCTTAAACAGCTCATCGAC
GAGTTGATGAGTGACCAACTGGACAAGCAGAGCGCAATGAAACTGGTGCA
AAGGCTGGAGAACGATGCGCTAAATCCAAAGCTGGCGCCCGAGGTCGCCG
GCCCGGAACCAGAATCCATGTTCGAGTCCGCCCCCGCTGATCTGCGCGGT
TGGAATAATGTGGCCGAGGGAGCGCCCAATGATCTGGAGGCCGGTGTTCC
GGATCATGGCGAATTCGAGCCCAGCCTAGAGTACGAGTTCACGCGCAGAC
GCATCCAGACGAACATCGGTGAGATCTGGAATTTCTTCAGCAGTGAACTG
GGCAAAGTGCGTAAGGCAGTGGCCGCCGGCCATGCGAGTGCCGATTTGGA
GGAGTCCATTAACCAGGTGCTGCTCCAAGGCGCCGAGCACAAGCGCTCCC
TGCTGAGCGATATGGAGCGGATGCGTCAGTCCGATGGCTACGAGGCCTGG
CGACACAAGGAGGCACGGGATTTGAGCGATTTGGTACAGCGGCGCCTGCA
CCATCTACAGAATCCCAGTGATTGCCAGAATGCTCGCAAGCTGGTCTGTA
AGCTCAACAAGGGCTGTGGCTACGGCTGCCAACTGCACCATGTGGTGTAT
TGCTTTATAGTGGCCTACGCCACCGAGCGGACGCTCATCTTAAAATCCCG
CGGATGGCGGTATCACAAGGGCGGCTGGGAGGAGGTGTTCCAACCGGTGT
CCAACAGCTGCCATGATGCGGGCACCGCCAACACATACAATTGGCCGGGC
AAGCCGAACACCCAGGTGCTGGTGTTGCCCATCATTGACTCGCTGATGCC
GAGACCGCCGTACCTGCCGCTCGCCGTTCCCGAGGATCTGGCGCCGAGAC
TTAAGCGTCTGCATGGAGACCCCATCGTTTGGTGGGTGGGTCAGTTCCTT
AAGTATTTGCTCCGACCGCAACCAACGACGCGGGATTTTCTTACCTCTGG
CATGCGCAATTTGGGTTGGGAGCGTCCCATTGTTGGCGTTCATGTCCGTC
GCACGGACAAAGTGGGCACAGAAGCGGCCTGCCACAGTGTGGAGGAGTAT
ATGACCTATGTCGAGGACTACTACCGCACGCTGGAGGTAAACGGCAGCAC
TGTGGCTCGCCGGATTTTCCTCGCATCGGATGATGCCCAGGTTATTGAGG
AGGCGCGCCGAAAGTACCCGCAGTACCAGATCATTGGTGATCCGGAGGTG
GCGCGCATGGCGTCCGTATCCACACGATACACGGACACCGCCCTGAACGG
GATCATTCTGGATATCCACCTGCTTTCCATGTCCGATCATCTGGTGTGCA
CCTTCTCGTCGCAGGTGTGTCGCGTGGCCTACGAGATAATGCAGACGATG
TATCCGGATGCAGCGCATCGGTTCAAGTCGCTGGACGACATATACTACTA
CGGTGGCCAGAATGCGCACAATCGCCGCGTCGTTATCGCCCACAAGCCGC
GCACGCACGAGGATCTACAGCTGCGTGTTGGTGACCTCGTCTCGGTGGCT
GGTAACCATTGGGATGGCAATTCCAAGGGCAAGAATACCCGCACCAACCA
GGGCGGCCTATTCCCCTCGTTCAAGGTGGAGGAGAAGGTGGACACCGCCA
AGCTGCCTCTCTATGCGGGCATTGCAAGCTTTCTAGACCAT

BO07852.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
FucT6-RA 1860 CG2448-PA 1..1857 17..1873 9285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
FucT6-RA 2795 CG2448-RA 504..2361 16..1873 9290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11707009..11707646 1873..1236 3190 100 Minus
X 23542271 X 11708244..11708796 812..260 2765 100 Minus
X 23542271 X 11707711..11708137 1236..810 2135 100 Minus
X 23542271 X 11709203..11709448 261..16 1230 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:25:07 has no hits.

BO07852.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:56 Download gff for BO07852.complete
Subject Subject Range Query Range Percent Splice Strand
FucT6-RA 1..1860 17..1874 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:36 Download gff for BO07852.complete
Subject Subject Range Query Range Percent Splice Strand
FucT6-RA 500..2365 13..1881 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:11 Download gff for BO07852.complete
Subject Subject Range Query Range Percent Splice Strand
FucT6-RA 505..2361 17..1875 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:57 Download gff for BO07852.complete
Subject Subject Range Query Range Percent Splice Strand
FucT6-RA 500..2365 13..1881 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:29 Download gff for BO07852.complete
Subject Subject Range Query Range Percent Splice Strand
FucT6-RA 505..2361 17..1875 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:29 Download gff for BO07852.complete
Subject Subject Range Query Range Percent Splice Strand
X 11707007..11707645 1237..1875 99 <- Minus
X 11707711..11708135 812..1236 100 <- Minus
X 11708245..11708794 262..811 100 <- Minus
X 11709203..11709447 17..261 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:11 Download gff for BO07852.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11601040..11601678 1237..1875 99 <- Minus
arm_X 11601744..11602168 812..1236 100 <- Minus
arm_X 11602278..11602827 262..811 100 <- Minus
arm_X 11603236..11603480 17..261 100   Minus

BO07852.pep Sequence

Translation from 16 to 1891

> BO07852.pep
MLLVRQLFGASANSWARALIIFVLAWIGLVYVFVVKLTNTQGQQAAGESE
LNARRISQALQMLEHTRQRNEELKQLIDELMSDQLDKQSAMKLVQRLEND
ALNPKLAPEVAGPEPESMFESAPADLRGWNNVAEGAPNDLEAGVPDHGEF
EPSLEYEFTRRRIQTNIGEIWNFFSSELGKVRKAVAAGHASADLEESINQ
VLLQGAEHKRSLLSDMERMRQSDGYEAWRHKEARDLSDLVQRRLHHLQNP
SDCQNARKLVCKLNKGCGYGCQLHHVVYCFIVAYATERTLILKSRGWRYH
KGGWEEVFQPVSNSCHDAGTANTYNWPGKPNTQVLVLPIIDSLMPRPPYL
PLAVPEDLAPRLKRLHGDPIVWWVGQFLKYLLRPQPTTRDFLTSGMRNLG
WERPIVGVHVRRTDKVGTEAACHSVEEYMTYVEDYYRTLEVNGSTVARRI
FLASDDAQVIEEARRKYPQYQIIGDPEVARMASVSTRYTDTALNGIILDI
HLLSMSDHLVCTFSSQVCRVAYEIMQTMYPDAAHRFKSLDDIYYYGGQNA
HNRRVVIAHKPRTHEDLQLRVGDLVSVAGNHWDGNSKGKNTRTNQGGLFP
SFKVEEKVDTAKLPLYAGIASFLDH

BO07852.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
FucT6-PA 619 CG2448-PA 1..619 1..619 3267 100 Plus