Clone Sequence Records
BO07853.3prime Sequence
891 bp (767 high quality bases) assembled on 2006-01-06
> BO07853.3prime
ATGGTCTAGAAAGCTTGCGAAGGGCTCCTCCTGCGCCTGTGTGGCAGCAT
CACTCGGCTGCTCGGCGAACATGCGCTGTCGACGGCACACAGTTGGCGTT
GGCATATCGTCCGCATTGCTAATGGAATCGCAATCGTAGTGACTGGGCAC
CTCGGGTGGCGGAGCATCGGCATAGTCGGTTGGGATGTCGGAAGCGGCGC
CGAACCACGACAGCATCATTGAGACCTCATGCCACCTACTCGAATTGGAC
TGCGAATCCAGCTGCAGTTCATCGTTTAGCGGCGGCGGCACCGTTCCACT
TGGCTGATGCGATCCAATGGTGGACGATTGGGCGCCACCAACAACCCGAA
CCCAATTGCTGCCGCTGGCCAGCGGAGATAGGTGCGTCTTTCGATACGAA
TCAATGGAGCTTTTGACTCGACGCATATCCAGCGGTGATGTGGCTGCCAA
TGTGGATCTTTCCTTGTTCAGCGTCACCAGGCAGGACTGCCGCTCCGGCT
CCTCATCCGCGTCGCCATCACGCCGATGGCGTGTGTATTCCAGCTCCTCC
TCACCATCCAGATCCTCGTCCATCGATTGCGCCAGACAGTCGTTCGAATG
GAAGCTTTGCTCCGAGTACGACTGCCCCTCGCATTCCATCTGCAAATGAT
CGCCCTGCTCCGTCGATCGCTCACTGGTCACCGCCAGCAGTTCCTGCTGT
TGTTGGCAATTGTCCGTGTATTCATGCCTGGGCCTGCTTGTGACCGGCTG
CTGCGCTATGGACACCTGGTAGGAATTGGATGACGGTGCCGCCGGTGATG
CTACTGTCGCCGCCAACGCTTGCTGCTGTTCATGTCTGCGCTGGCGTTGG
ATGAGCATGCGTTGGATATTCTGTCGCGACTGATCGTTGCC
BO07853.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4198-PA | 1434 | CG4198-RA | 559..1431 | 891..19 | 4365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:36:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4198-RA | 1867 | CG4198-RA | 734..1606 | 891..19 | 4365 | 100 | Minus |
CG4198-RB | 1864 | CG4198-RB | 734..1603 | 891..19 | 4310 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:36:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5314210..5314929 | 738..19 | 3600 | 100 | Minus |
X | 23542271 | X | 5313991..5314145 | 891..737 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:36:58 has no hits.
BO07853.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:00 Download gff for
BO07853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4198-PA | 559..1434 | 18..891 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:25 Download gff for
BO07853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4198-PA | 559..1434 | 18..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:05:15 Download gff for
BO07853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4198-RA | 734..1610 | 13..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:51:23 Download gff for
BO07853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4198-RA | 734..1610 | 13..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:51:23 Download gff for
BO07853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5313991..5314145 | 737..891 | 100 | -> | Minus |
X | 5314212..5314933 | 13..736 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:05:15 Download gff for
BO07853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5208024..5208178 | 737..891 | 100 | -> | Minus |
arm_X | 5208245..5208966 | 13..736 | 99 | | Minus |
BO07853.5prime Sequence
917 bp (729 high quality bases) assembled on 2006-01-06
> BO07853.5prime
GAAGTTATCAGTCGACATGTCGTATCAGATCAAATCGACGCCCTACTTTC
GTCGCATGTTCAACGAGAGCAAGAAGAATGGCCAACTGCAGCGTCTGCGT
GATGAGTACGAGCGCATCCAGGAGTTCAACGATCGCACCATCGAAATGAA
GATGCGACAGGTGCGATTAAAGCGGCTATTTCGCGAGATCGAGGTAATTA
AGGTGGCTGGCGGGGCGGCCGGTGGCGCCAGCGGTGGCGGCACATCGACG
GCATCATCGCCATCGAATGTTGACCAATCGTTTGGTTTAGCCGGCGGACG
CGTTACCCGCCGGAGACGGCAACAGGCACACGGTGCTATCACGCTGGCTA
GCAGCACGCCCCAGCAGCGGATGCACAAACAGCGCATAGAGACGCTGGCA
CGCGCACGCCAACTGGGCCAGGAGATCTCGCGTCGGAATGGCCTAATGGC
CGAGGCCGGCACCGGCGGTTTCCTGCGCAGCGAACTCCGGATGACGGCCA
AGCTGCAGGCGGCGAACGATGCACGCCGGGCGGCCGTGGAGCGTCGCGAC
TTGGCCGCCAAGCGCATCTCCTATGGCAACGATCAGTCGCGACAGAATAT
CCAACGCATGCTCATCCAACGCCAGCGCAGACATGAACAGCAGCAAGCGT
TGGCGGCGACAGTAGCATCACCGGCGGCACCGTCATCCAATTCCTACCAG
GTGTCCATAGCGCAGCAGCCGGTCACAAGCAGGCCCAGGCATGAATACAC
GGACAATTGCCAACAACAGCAGGAACTGCTGGCGGTGACCAGTGAGCGAT
CGACGGAGCAGGGCGATCATTTGCAGATGGAATGCGAGGGGCAGTCGTAC
TCGGAGCAAAGCTTCCATTCGAACGACTGTCTGGCGCAATCGATGGACGA
GGATCTGGATGGTGAGG
BO07853.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4198-PA | 1434 | CG4198-RA | 1..901 | 17..917 | 4505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:41:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4198-RA | 1867 | CG4198-RA | 175..1076 | 16..917 | 4510 | 100 | Plus |
CG4198-RB | 1864 | CG4198-RB | 175..1073 | 16..917 | 4455 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:41:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5313432..5314145 | 16..729 | 3570 | 100 | Plus |
X | 23542271 | X | 5314210..5314399 | 728..917 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:41:28 has no hits.
BO07853.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:01 Download gff for
BO07853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4198-PA | 1..901 | 17..917 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:26 Download gff for
BO07853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4198-PA | 1..901 | 17..917 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:44:52 Download gff for
BO07853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4198-RA | 167..1076 | 9..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:17:03 Download gff for
BO07853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4198-RA | 167..1076 | 9..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:17:03 Download gff for
BO07853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5313424..5314145 | 9..729 | 99 | -> | Plus |
X | 5314212..5314399 | 730..917 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:44:52 Download gff for
BO07853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5207457..5208178 | 9..729 | 99 | -> | Plus |
arm_X | 5208245..5208432 | 730..917 | 100 | | Plus |
BO07853.complete Sequence
1465 bp (1465 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630963
> BO07853.complete
GAAGTTATCAGTCGACATGTCGTATCAGATCAAATCGACGCCCTACTTTC
GTCGCATGTTCAACGAGAGCAAGAAGAATGGCCAACTGCAGCGTCTGCGT
GATGAGTACGAGCGCATCCAGGAGTTCAACGATCGCACCATCGAAATGAA
GATGCGACAGGTGCGATTAAAGCGGCTATTTCGCGAGATCGAGGTAATTA
AGGTGGCTGGCGGGGCGGCCGGTGGCGCCAGCGGTGGCGGCACATCGACG
GCATCATCGCCATCGAATGTTGACCAATCGTTTGGTTTAGCCGGCGGACG
CGTTACCCGCCGGAGACGGCAACAGGCACACGGTGCTATCACGCTGGCTA
GCAGCACGCCCCAGCAGCGGATGCACAAACAGCGCATAGAGACGCTGGCA
CGCGCACGCCAACTGGGCCAGGAGATCTCGCGTCGGAATGGCCTAATGGC
CGAGGCCGGCACCGGCGGTTTCCTGCGCAGCGAACTCCGGATGACGGCCA
AGCTGCAGGCGGCGAACGATGCACGCCGGGCGGCCGTGGAGCGTCGCGAC
TTGGCCGCCAAGCGCATCTCCTATGGCAACGATCAGTCGCGACAGAATAT
CCAACGCATGCTCATCCAACGCCAGCGCAGACATGAACAGCAGCAAGCGT
TGGCGGCGACAGTAGCATCACCGGCGGCACCGTCATCCAATTCCTACCAG
GTGTCCATAGCGCAGCAGCCGGTCACAAGCAGGCCCAGGCATGAATACAC
GGACAATTGCCAACAACAGCAGGAACTGCTGGCGGTGACCAGTGAGCGAT
CGACGGAGCAGGGCGATCATTTGCAGATGGAATGCGAGGGGCAGTCGTAC
TCGGAGCAAAGCTTCCATTCGAACGACTGTCTGGCGCAATCGATGGACGA
GGATCTGGATGGTGAGGAGGAGCTGGAATACACACGCCATCGGCGTGATG
GCGACGCGGATGAGGAGCCGGAGCGGCAGTCCTGCCTGGTGACGCTGAAC
AAGGAAAGATCCACATTGGCAGCCACATCACCGCTGGATATGCGTCGAGT
CAAAAGCTCCATTGATTCGTATCGAAAGACGCACCTATCTCCGCTGGCCA
GCGGCAGCAATTGGGTTCGGGTTGTTGGTGGCGCCCAATCGTCCACCATT
GGATCGCATCAGCCAAGTGGAACGGTGCCGCCGCCGCTAAACGATGAACT
GCAGCTGGATTCGCAGTCCAATTCGAGTAGGTGGCATGAGGTCTCAATGA
TGCTGTCGTGGTTCGGCGCCGCTTCCGACATCCCAACCGACTATGCCGAT
GCTCCGCCACCCGAGGTGCCCAGTCACTACGATTGCGATTCCATTAGCAA
TGCGGACGATATGCCAACGCCAACTGTGTGCCGTCGACAGCGCATGTTCG
CCGAGCAGCCGAGTGATGCTGCCACACAGGCGCAGGAGGAGCCCTTCGCA
AGCTTTCTAGACCAT
BO07853.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:00:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4198-RA | 1434 | CG4198-PA | 1..1431 | 17..1447 | 7155 | 100 | Plus |
CG4198-RB | 1431 | CG4198-PB | 1..1428 | 17..1447 | 7075 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:00:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4198-RA | 1867 | CG4198-RA | 175..1606 | 16..1447 | 7160 | 100 | Plus |
CG4198-RB | 1864 | CG4198-RB | 175..1603 | 16..1447 | 7080 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:00:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5314210..5314929 | 728..1447 | 3600 | 100 | Plus |
X | 23542271 | X | 5313432..5314145 | 16..729 | 3570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:00:22 has no hits.
BO07853.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:21 Download gff for
BO07853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4198-RA | 1..1434 | 17..1448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:54 Download gff for
BO07853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4198-RA | 159..1602 | 9..1453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:43:27 Download gff for
BO07853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4198-RA | 176..1606 | 17..1449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:21 Download gff for
BO07853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4198-RA | 159..1602 | 9..1453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:37 Download gff for
BO07853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4198-RA | 176..1606 | 17..1449 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:37 Download gff for
BO07853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5313433..5314145 | 17..729 | 100 | -> | Plus |
X | 5314212..5314929 | 730..1449 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:43:27 Download gff for
BO07853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5207466..5208178 | 17..729 | 100 | -> | Plus |
arm_X | 5208245..5208962 | 730..1449 | 99 | | Plus |
BO07853.pep Sequence
Translation from 16 to 1465
> BO07853.pep
MSYQIKSTPYFRRMFNESKKNGQLQRLRDEYERIQEFNDRTIEMKMRQVR
LKRLFREIEVIKVAGGAAGGASGGGTSTASSPSNVDQSFGLAGGRVTRRR
RQQAHGAITLASSTPQQRMHKQRIETLARARQLGQEISRRNGLMAEAGTG
GFLRSELRMTAKLQAANDARRAAVERRDLAAKRISYGNDQSRQNIQRMLI
QRQRRHEQQQALAATVASPAAPSSNSYQVSIAQQPVTSRPRHEYTDNCQQ
QQELLAVTSERSTEQGDHLQMECEGQSYSEQSFHSNDCLAQSMDEDLDGE
EELEYTRHRRDGDADEEPERQSCLVTLNKERSTLAATSPLDMRRVKSSID
SYRKTHLSPLASGSNWVRVVGGAQSSTIGSHQPSGTVPPPLNDELQLDSQ
SNSSRWHEVSMMLSWFGAASDIPTDYADAPPPEVPSHYDCDSISNADDMP
TPTVCRRQRMFAEQPSDAATQAQEEPFASFLDH
BO07853.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4198-PA | 477 | CG4198-PA | 1..477 | 1..477 | 2447 | 100 | Plus |
CG4198-PB | 476 | CG4198-PB | 1..476 | 1..477 | 2431 | 99.8 | Plus |