Clone BO07853 Report

Search the DGRC for BO07853

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:78
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG4198-RA
Protein status:BO07853.pep: validated full length
Sequenced Size:1465

Clone Sequence Records

BO07853.3prime Sequence

891 bp (767 high quality bases) assembled on 2006-01-06

> BO07853.3prime
ATGGTCTAGAAAGCTTGCGAAGGGCTCCTCCTGCGCCTGTGTGGCAGCAT
CACTCGGCTGCTCGGCGAACATGCGCTGTCGACGGCACACAGTTGGCGTT
GGCATATCGTCCGCATTGCTAATGGAATCGCAATCGTAGTGACTGGGCAC
CTCGGGTGGCGGAGCATCGGCATAGTCGGTTGGGATGTCGGAAGCGGCGC
CGAACCACGACAGCATCATTGAGACCTCATGCCACCTACTCGAATTGGAC
TGCGAATCCAGCTGCAGTTCATCGTTTAGCGGCGGCGGCACCGTTCCACT
TGGCTGATGCGATCCAATGGTGGACGATTGGGCGCCACCAACAACCCGAA
CCCAATTGCTGCCGCTGGCCAGCGGAGATAGGTGCGTCTTTCGATACGAA
TCAATGGAGCTTTTGACTCGACGCATATCCAGCGGTGATGTGGCTGCCAA
TGTGGATCTTTCCTTGTTCAGCGTCACCAGGCAGGACTGCCGCTCCGGCT
CCTCATCCGCGTCGCCATCACGCCGATGGCGTGTGTATTCCAGCTCCTCC
TCACCATCCAGATCCTCGTCCATCGATTGCGCCAGACAGTCGTTCGAATG
GAAGCTTTGCTCCGAGTACGACTGCCCCTCGCATTCCATCTGCAAATGAT
CGCCCTGCTCCGTCGATCGCTCACTGGTCACCGCCAGCAGTTCCTGCTGT
TGTTGGCAATTGTCCGTGTATTCATGCCTGGGCCTGCTTGTGACCGGCTG
CTGCGCTATGGACACCTGGTAGGAATTGGATGACGGTGCCGCCGGTGATG
CTACTGTCGCCGCCAACGCTTGCTGCTGTTCATGTCTGCGCTGGCGTTGG
ATGAGCATGCGTTGGATATTCTGTCGCGACTGATCGTTGCC

BO07853.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4198-PA 1434 CG4198-RA 559..1431 891..19 4365 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4198-RA 1867 CG4198-RA 734..1606 891..19 4365 100 Minus
CG4198-RB 1864 CG4198-RB 734..1603 891..19 4310 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5314210..5314929 738..19 3600 100 Minus
X 23542271 X 5313991..5314145 891..737 775 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:36:58 has no hits.

BO07853.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:00 Download gff for BO07853.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4198-PA 559..1434 18..891 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:25 Download gff for BO07853.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4198-PA 559..1434 18..891 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:05:15 Download gff for BO07853.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4198-RA 734..1610 13..891 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:51:23 Download gff for BO07853.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4198-RA 734..1610 13..891 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:51:23 Download gff for BO07853.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5313991..5314145 737..891 100 -> Minus
X 5314212..5314933 13..736 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:05:15 Download gff for BO07853.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5208024..5208178 737..891 100 -> Minus
arm_X 5208245..5208966 13..736 99   Minus

BO07853.5prime Sequence

917 bp (729 high quality bases) assembled on 2006-01-06

> BO07853.5prime
GAAGTTATCAGTCGACATGTCGTATCAGATCAAATCGACGCCCTACTTTC
GTCGCATGTTCAACGAGAGCAAGAAGAATGGCCAACTGCAGCGTCTGCGT
GATGAGTACGAGCGCATCCAGGAGTTCAACGATCGCACCATCGAAATGAA
GATGCGACAGGTGCGATTAAAGCGGCTATTTCGCGAGATCGAGGTAATTA
AGGTGGCTGGCGGGGCGGCCGGTGGCGCCAGCGGTGGCGGCACATCGACG
GCATCATCGCCATCGAATGTTGACCAATCGTTTGGTTTAGCCGGCGGACG
CGTTACCCGCCGGAGACGGCAACAGGCACACGGTGCTATCACGCTGGCTA
GCAGCACGCCCCAGCAGCGGATGCACAAACAGCGCATAGAGACGCTGGCA
CGCGCACGCCAACTGGGCCAGGAGATCTCGCGTCGGAATGGCCTAATGGC
CGAGGCCGGCACCGGCGGTTTCCTGCGCAGCGAACTCCGGATGACGGCCA
AGCTGCAGGCGGCGAACGATGCACGCCGGGCGGCCGTGGAGCGTCGCGAC
TTGGCCGCCAAGCGCATCTCCTATGGCAACGATCAGTCGCGACAGAATAT
CCAACGCATGCTCATCCAACGCCAGCGCAGACATGAACAGCAGCAAGCGT
TGGCGGCGACAGTAGCATCACCGGCGGCACCGTCATCCAATTCCTACCAG
GTGTCCATAGCGCAGCAGCCGGTCACAAGCAGGCCCAGGCATGAATACAC
GGACAATTGCCAACAACAGCAGGAACTGCTGGCGGTGACCAGTGAGCGAT
CGACGGAGCAGGGCGATCATTTGCAGATGGAATGCGAGGGGCAGTCGTAC
TCGGAGCAAAGCTTCCATTCGAACGACTGTCTGGCGCAATCGATGGACGA
GGATCTGGATGGTGAGG

BO07853.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4198-PA 1434 CG4198-RA 1..901 17..917 4505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG4198-RA 1867 CG4198-RA 175..1076 16..917 4510 100 Plus
CG4198-RB 1864 CG4198-RB 175..1073 16..917 4455 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5313432..5314145 16..729 3570 100 Plus
X 23542271 X 5314210..5314399 728..917 950 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:41:28 has no hits.

BO07853.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:01 Download gff for BO07853.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4198-PA 1..901 17..917 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:26 Download gff for BO07853.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4198-PA 1..901 17..917 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:44:52 Download gff for BO07853.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4198-RA 167..1076 9..917 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:17:03 Download gff for BO07853.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4198-RA 167..1076 9..917 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:17:03 Download gff for BO07853.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5313424..5314145 9..729 99 -> Plus
X 5314212..5314399 730..917 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:44:52 Download gff for BO07853.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5207457..5208178 9..729 99 -> Plus
arm_X 5208245..5208432 730..917 100   Plus

BO07853.complete Sequence

1465 bp (1465 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630963

> BO07853.complete
GAAGTTATCAGTCGACATGTCGTATCAGATCAAATCGACGCCCTACTTTC
GTCGCATGTTCAACGAGAGCAAGAAGAATGGCCAACTGCAGCGTCTGCGT
GATGAGTACGAGCGCATCCAGGAGTTCAACGATCGCACCATCGAAATGAA
GATGCGACAGGTGCGATTAAAGCGGCTATTTCGCGAGATCGAGGTAATTA
AGGTGGCTGGCGGGGCGGCCGGTGGCGCCAGCGGTGGCGGCACATCGACG
GCATCATCGCCATCGAATGTTGACCAATCGTTTGGTTTAGCCGGCGGACG
CGTTACCCGCCGGAGACGGCAACAGGCACACGGTGCTATCACGCTGGCTA
GCAGCACGCCCCAGCAGCGGATGCACAAACAGCGCATAGAGACGCTGGCA
CGCGCACGCCAACTGGGCCAGGAGATCTCGCGTCGGAATGGCCTAATGGC
CGAGGCCGGCACCGGCGGTTTCCTGCGCAGCGAACTCCGGATGACGGCCA
AGCTGCAGGCGGCGAACGATGCACGCCGGGCGGCCGTGGAGCGTCGCGAC
TTGGCCGCCAAGCGCATCTCCTATGGCAACGATCAGTCGCGACAGAATAT
CCAACGCATGCTCATCCAACGCCAGCGCAGACATGAACAGCAGCAAGCGT
TGGCGGCGACAGTAGCATCACCGGCGGCACCGTCATCCAATTCCTACCAG
GTGTCCATAGCGCAGCAGCCGGTCACAAGCAGGCCCAGGCATGAATACAC
GGACAATTGCCAACAACAGCAGGAACTGCTGGCGGTGACCAGTGAGCGAT
CGACGGAGCAGGGCGATCATTTGCAGATGGAATGCGAGGGGCAGTCGTAC
TCGGAGCAAAGCTTCCATTCGAACGACTGTCTGGCGCAATCGATGGACGA
GGATCTGGATGGTGAGGAGGAGCTGGAATACACACGCCATCGGCGTGATG
GCGACGCGGATGAGGAGCCGGAGCGGCAGTCCTGCCTGGTGACGCTGAAC
AAGGAAAGATCCACATTGGCAGCCACATCACCGCTGGATATGCGTCGAGT
CAAAAGCTCCATTGATTCGTATCGAAAGACGCACCTATCTCCGCTGGCCA
GCGGCAGCAATTGGGTTCGGGTTGTTGGTGGCGCCCAATCGTCCACCATT
GGATCGCATCAGCCAAGTGGAACGGTGCCGCCGCCGCTAAACGATGAACT
GCAGCTGGATTCGCAGTCCAATTCGAGTAGGTGGCATGAGGTCTCAATGA
TGCTGTCGTGGTTCGGCGCCGCTTCCGACATCCCAACCGACTATGCCGAT
GCTCCGCCACCCGAGGTGCCCAGTCACTACGATTGCGATTCCATTAGCAA
TGCGGACGATATGCCAACGCCAACTGTGTGCCGTCGACAGCGCATGTTCG
CCGAGCAGCCGAGTGATGCTGCCACACAGGCGCAGGAGGAGCCCTTCGCA
AGCTTTCTAGACCAT

BO07853.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:00:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG4198-RA 1434 CG4198-PA 1..1431 17..1447 7155 100 Plus
CG4198-RB 1431 CG4198-PB 1..1428 17..1447 7075 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4198-RA 1867 CG4198-RA 175..1606 16..1447 7160 100 Plus
CG4198-RB 1864 CG4198-RB 175..1603 16..1447 7080 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5314210..5314929 728..1447 3600 100 Plus
X 23542271 X 5313432..5314145 16..729 3570 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:00:22 has no hits.

BO07853.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:21 Download gff for BO07853.complete
Subject Subject Range Query Range Percent Splice Strand
CG4198-RA 1..1434 17..1448 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:54 Download gff for BO07853.complete
Subject Subject Range Query Range Percent Splice Strand
CG4198-RA 159..1602 9..1453 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:43:27 Download gff for BO07853.complete
Subject Subject Range Query Range Percent Splice Strand
CG4198-RA 176..1606 17..1449 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:21 Download gff for BO07853.complete
Subject Subject Range Query Range Percent Splice Strand
CG4198-RA 159..1602 9..1453 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:37 Download gff for BO07853.complete
Subject Subject Range Query Range Percent Splice Strand
CG4198-RA 176..1606 17..1449 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:37 Download gff for BO07853.complete
Subject Subject Range Query Range Percent Splice Strand
X 5313433..5314145 17..729 100 -> Plus
X 5314212..5314929 730..1449 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:43:27 Download gff for BO07853.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5207466..5208178 17..729 100 -> Plus
arm_X 5208245..5208962 730..1449 99   Plus

BO07853.pep Sequence

Translation from 16 to 1465

> BO07853.pep
MSYQIKSTPYFRRMFNESKKNGQLQRLRDEYERIQEFNDRTIEMKMRQVR
LKRLFREIEVIKVAGGAAGGASGGGTSTASSPSNVDQSFGLAGGRVTRRR
RQQAHGAITLASSTPQQRMHKQRIETLARARQLGQEISRRNGLMAEAGTG
GFLRSELRMTAKLQAANDARRAAVERRDLAAKRISYGNDQSRQNIQRMLI
QRQRRHEQQQALAATVASPAAPSSNSYQVSIAQQPVTSRPRHEYTDNCQQ
QQELLAVTSERSTEQGDHLQMECEGQSYSEQSFHSNDCLAQSMDEDLDGE
EELEYTRHRRDGDADEEPERQSCLVTLNKERSTLAATSPLDMRRVKSSID
SYRKTHLSPLASGSNWVRVVGGAQSSTIGSHQPSGTVPPPLNDELQLDSQ
SNSSRWHEVSMMLSWFGAASDIPTDYADAPPPEVPSHYDCDSISNADDMP
TPTVCRRQRMFAEQPSDAATQAQEEPFASFLDH

BO07853.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG4198-PA 477 CG4198-PA 1..477 1..477 2447 100 Plus
CG4198-PB 476 CG4198-PB 1..476 1..477 2431 99.8 Plus