Clone Sequence Records
BO07854.3prime Sequence
827 bp (738 high quality bases) assembled on 2006-01-06
> BO07854.3prime
ATGGTCTAGAAAGCTTGCGATCAATTGATTTGGCTTATACAAGTTGTCCC
AAATTTGTAGTTTTTCATACTCGGGCAAATCTATTATTGTAACATCGCTG
CTGATGTTAATAACACGCTTGGGATCATTCTTGGTAGATGGTTTCCACTC
CAAGTGGCCAATCTCTGGGCAATTGGGATTGGAGGTCGCAGCGAATGCCG
TCCAAATGCCAATCATTCTTTCGATAGTTCGATATTCCGCAGATGTCTTA
TCCAGTTTCCAAGAGCCCGCGTTCCGGAACAAATAGCTCAGGTCATCGGC
GTGGGCCACACCAGTCTTAATTTTATCTCCACAGAATTTAGCCCGGTAGA
AGTTGAAGTTCGGCGAATCAAAGTCGAAGCGATAGTAATATGTGGGTGCT
TTTGCATAGGTAAGTCTGGCGTTAAAGGTGCGATTAAAGCCGTGCCAAAA
TATTTTGTAGGAATAAAAATCGAGCATATTCAAAAGTAGCTCTGAGCTGG
GTGGCGAATATCCGAAGTAGGCCTTCATCAGACGCTGGCTGTACTCCAGA
TTCTCTTTCTCGCTACTGACCGTACGCACATCAACCGGCACCAGCCTGGT
GGGATCCTGGCTTAGGCTATCCAATGCCTTGAGATTGGCCGACACGGCTG
GATACATGAAAAGACCCTCGAAGGAGGTTCCACCCAACATGACTGGAAAA
TTGTTGGACCACGCATCTCGGGCCATCTCTACTGGCGGTTTGGGCACCAC
GCAATCCTCACCCACATATGCCTCCACAGTGGGTCCAAAGGCGAAGAGCA
GACCGTTCCTCCGGTGCTCGGGTGTTA
BO07854.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1089-PA | 1629 | alpha-Est5-RA | 818..1626 | 827..19 | 4045 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:59:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est5-RA | 1754 | CG1089-RA | 908..1716 | 827..19 | 4045 | 100 | Minus |
alpha-Est5-RB | 2490 | CG1089-RB | 911..1719 | 827..19 | 4045 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:59:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7534267..7534716 | 19..468 | 2250 | 100 | Plus |
3R | 32079331 | 3R | 7534802..7535160 | 469..827 | 1795 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:59:55 has no hits.
BO07854.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:02 Download gff for
BO07854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1089-PA | 819..1629 | 15..826 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:28 Download gff for
BO07854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1089-PA | 819..1629 | 15..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:08:40 Download gff for
BO07854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est5-RB | 912..1724 | 13..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:35:23 Download gff for
BO07854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est5-RB | 912..1724 | 13..826 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:35:23 Download gff for
BO07854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7534262..7534716 | 13..468 | 99 | <- | Plus |
3R | 7534802..7535159 | 469..826 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:08:40 Download gff for
BO07854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3359984..3360438 | 13..468 | 99 | <- | Plus |
arm_3R | 3360524..3360881 | 469..826 | 100 | | Plus |
BO07854.5prime Sequence
895 bp (760 high quality bases) assembled on 2006-01-06
> BO07854.5prime
GAAGTTATCAGTCGACATGATGTCAAAGGAAAGCCTGGAAACTTGCGAAC
TTACTCTGCCCGTGGGCCAAATTAAGGGCGTCAAACGCCTTAGTCTTTAC
GACGATCCCTACTTCAGCTTCGAGAAGATCCCCTTTGCGAAGCCCCCGTT
GGGAGAACTGAGATTTAGGGCCCCCGTGCCAGCAGATCCGTGGAGCGGCG
TTCTGGACTGCACCCACTATGCAGAGAAGCCAACCCAGAGGGGCTTACTG
ACCCGTGAAATCGAAGGCGGCGAGGATTGTCTGTATCTGAACGTCTATTC
CAAGCAGCTGAAAAGTGAGAAGCCATTGCCGGTGATGGTGTACATTTATG
GCGGGGCCTTCACCGTAGGAGAGGCCACCCGCGAATTGTACGGCCCGGAC
TATTTTATGACCAAAGATGTTGTTCTTGTGACGCTTAACTATCGCGTGGA
TTGTTTGGGATTCCTATCGCTCAAGGACCCGAGTCTGAAAGTTCCCGGAA
ACGCAGGACTCAAGGACCAAGTGCTAGCTCTCAAGTGGGTCAAGCAGTAC
ATCTCCAACTTCAATGGCGATGATAGTAATATTACGGTATTCGGAGAGAG
CGCCGGAGGTTGCTCCACCCACTTCATGATGTGTACGGAACAGACCAGGG
GACTGTTTCACAAGGCCATTCCCATGTCAGGAACAGTGCACAACTACTGG
GCCAATAATCCGGCCGAAGACTTTGCCTTTCGCCTGGCTCAGCAGAATGG
TTTCACTGGCGAAAATGACGACGCCAAGGTACTGGAATATCTCCAAGGAG
TTCCGGCTAGAGATTTGGTGAACCATAATTTGCTAACACCCGAGCACCGG
AGGAACGGTCTGCTCTTCGCCTTTGGACCACTGTGGAGGCATATG
BO07854.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1089-PA | 1629 | alpha-Est5-RA | 1..863 | 17..879 | 4315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:46:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est5-RA | 1754 | CG1089-RA | 91..970 | 17..895 | 4375 | 99.9 | Plus |
alpha-Est5-RB | 2490 | CG1089-RB | 91..973 | 17..895 | 4335 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:46:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7535098..7535536 | 895..458 | 2145 | 99.8 | Minus |
3R | 32079331 | 3R | 7535946..7536221 | 307..32 | 1380 | 100 | Minus |
3R | 32079331 | 3R | 7535732..7535885 | 459..306 | 770 | 100 | Minus |
Blast to na_te.dros performed 2015-02-09 19:46:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 1063..1101 | 295..333 | 114 | 76.9 | Plus |
BO07854.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:03 Download gff for
BO07854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1089-PA | 1..880 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:30 Download gff for
BO07854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1089-PA | 1..880 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:11:04 Download gff for
BO07854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est5-RA | 91..970 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:21:43 Download gff for
BO07854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est5-RA | 91..970 | 17..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:21:43 Download gff for
BO07854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7535098..7535535 | 459..895 | 99 | <- | Minus |
3R | 7535733..7535883 | 308..458 | 100 | <- | Minus |
3R | 7535946..7536219 | 34..307 | 100 | <- | Minus |
3R | 7536284..7536300 | 17..33 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:11:04 Download gff for
BO07854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3360820..3361257 | 459..895 | 99 | <- | Minus |
arm_3R | 3361455..3361605 | 308..458 | 100 | <- | Minus |
arm_3R | 3361668..3361941 | 34..307 | 100 | <- | Minus |
arm_3R | 3362006..3362022 | 17..33 | 100 | | Minus |
BO07854.complete Sequence
1660 bp (1660 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630964
> BO07854.complete
GAAGTTATCAGTCGACATGATGTCAAAGGAAAGCCTGGAAACTTGCGAAC
TTACTCTGCCCGTGGGCCAAATTAAGGGCGTCAAACGCCTTAGTCTTTAC
GACGATCCCTACTTCAGCTTCGAGAAGATCCCCTTTGCGAAGCCCCCGTT
GGGAGAACTGAGATTTAGGGCCCCCGTGCCAGCAGATCCGTGGAGCGGCG
TTCTGGACTGCACCCACTATGCAGAGAAGCCAACCCAGAGGGGCTTACTG
ACCCGTGAAATCGAAGGCGGCGAGGATTGTCTGTATCTGAACGTCTATTC
CAAGCAGCTGAAAAGTGAGAAGCCATTGCCGGTGATGGTGTACATTTATG
GCGGGGCCTTCACCGTAGGAGAGGCCACCCGCGAATTGTACGGCCCGGAC
TATTTTATGACCAAAGATGTTGTTCTTGTGACGCTTAACTATCGCGTGGA
TTGTTTGGGATTCCTATCGCTCAAGGACCCGAGTCTGAAAGTTCCCGGAA
ACGCAGGACTCAAGGACCAAGTGCTAGCTCTCAAGTGGGTCAAGCAGTAC
ATCTCCAACTTCAATGGCGATGATAGTAATATTACGGTATTCGGAGAGAG
CGCCGGAGGTTGCTCCACCCACTTCATGATGTGTACGGAACAGACCAGGG
GACTGTTTCACAAGGCCATTCCCATGTCAGGAACAGTGCACAACTACTGG
GCCAATAATCCGGCCGAAGACTTTGCCTTTCGCCTGGCTCAGCAGAATGG
TTTCACTGGCGAAAATGACGACGCCAAGGTACTGGAATATCTCCAAGGAG
TTCCGGCTAGAGATTTGGTGAACCATAATTTGCTAACACCCGAGCACCGG
AGGAACGGTCTGCTCTTCGCCTTTGGACCCACTGTGGAGGCATATGTGGG
TGAGGATTGCGTGGTGCCCAAACCGCCAGTAGAGATGGCCCGAGATGCGT
GGTCCAACAATTTTCCAGTCATGTTGGGTGGAACCTCCTTCGAGGGTCTT
TTCATGTATCCAGCCGTGTCGGCCAATCTCAAGGCATTGGATAGCCTAAG
CCAGGATCCCACCAGGCTGGTGCCGGTTGATGTGCGTACGGTCAGTAGCG
AGAAAGAGAATCTGGAGTACAGCCAGCGTCTGATGAAGGCCTACTTCGGA
TATTCGCCACCCAGCTCAGAGCTACTTTTGAATATGCTCGATTTTTATTC
CTACAAAATATTTTGGCACGGCTTTAATCGCACCTTTAACGCCAGACTTA
CCTATGCAAAAGCACCCACATATTACTATCGCTTCGACTTTGATTCGCCG
AACTTCAACTTCTACCGGGCTAAATTCTGTGGAGATAAAATTAAGACTGG
TGTGGCCCACGCCGATGACCTGAGCTATTTGTTCCGGAACGCGGGCTCTT
GGAAACTGGATAAGACATCTGCGGAATATCGAACTATCGAAAGAATGATT
GGCATTTGGACGGCATTCGCTGCGACCTCCAATCCCAATTGCCCAGAGAT
TGGCCACTTGGAGTGGAAACCATCTACCAAGAATGATCCCAAGCGTGTTA
TTAACATCAGCAGCGATGTTACAATAATAGATTTGCCCGAGTATGAAAAA
CTACAAATTTGGGACAACTTGTATAAGCCAAATCAATTGATCGCAAGCTT
TCTAGACCAT
BO07854.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:15:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est5-RA | 1629 | CG1089-PA | 1..1626 | 17..1642 | 8130 | 100 | Plus |
alpha-Est5-RB | 1632 | CG1089-PB | 1..1629 | 17..1642 | 8065 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est5-RA | 1754 | CG1089-RA | 91..1716 | 17..1642 | 8130 | 100 | Plus |
alpha-Est5-RB | 2490 | CG1089-RB | 91..1719 | 17..1642 | 8065 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7534802..7535536 | 1192..458 | 3675 | 100 | Minus |
3R | 32079331 | 3R | 7534267..7534716 | 1642..1193 | 2250 | 100 | Minus |
3R | 32079331 | 3R | 7535946..7536221 | 307..32 | 1380 | 100 | Minus |
3R | 32079331 | 3R | 7535732..7535885 | 459..306 | 770 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:15:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 1063..1101 | 295..333 | 114 | 76.9 | Plus |
BO07854.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:58 Download gff for
BO07854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est5-RA | 1..1629 | 17..1646 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:37 Download gff for
BO07854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est5-RA | 226..1856 | 17..1648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:06 Download gff for
BO07854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est5-RA | 91..1716 | 17..1644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:58 Download gff for
BO07854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est5-RA | 226..1856 | 17..1648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:03 Download gff for
BO07854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est5-RA | 91..1716 | 17..1644 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:03 Download gff for
BO07854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7534265..7534716 | 1193..1644 | 99 | <- | Minus |
3R | 7534802..7535535 | 459..1192 | 100 | <- | Minus |
3R | 7535733..7535883 | 308..458 | 100 | <- | Minus |
3R | 7535946..7536219 | 34..307 | 100 | <- | Minus |
3R | 7536284..7536300 | 17..33 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:06 Download gff for
BO07854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3359987..3360438 | 1193..1644 | 99 | <- | Minus |
arm_3R | 3360524..3361257 | 459..1192 | 100 | <- | Minus |
arm_3R | 3361455..3361605 | 308..458 | 100 | <- | Minus |
arm_3R | 3361668..3361941 | 34..307 | 100 | <- | Minus |
arm_3R | 3362006..3362022 | 17..33 | 100 | | Minus |
BO07854.pep Sequence
Translation from 16 to 1660
> BO07854.pep
MMSKESLETCELTLPVGQIKGVKRLSLYDDPYFSFEKIPFAKPPLGELRF
RAPVPADPWSGVLDCTHYAEKPTQRGLLTREIEGGEDCLYLNVYSKQLKS
EKPLPVMVYIYGGAFTVGEATRELYGPDYFMTKDVVLVTLNYRVDCLGFL
SLKDPSLKVPGNAGLKDQVLALKWVKQYISNFNGDDSNITVFGESAGGCS
THFMMCTEQTRGLFHKAIPMSGTVHNYWANNPAEDFAFRLAQQNGFTGEN
DDAKVLEYLQGVPARDLVNHNLLTPEHRRNGLLFAFGPTVEAYVGEDCVV
PKPPVEMARDAWSNNFPVMLGGTSFEGLFMYPAVSANLKALDSLSQDPTR
LVPVDVRTVSSEKENLEYSQRLMKAYFGYSPPSSELLLNMLDFYSYKIFW
HGFNRTFNARLTYAKAPTYYYRFDFDSPNFNFYRAKFCGDKIKTGVAHAD
DLSYLFRNAGSWKLDKTSAEYRTIERMIGIWTAFAATSNPNCPEIGHLEW
KPSTKNDPKRVINISSDVTIIDLPEYEKLQIWDNLYKPNQLIASFLDH
BO07854.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:37:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est5-PA | 542 | CG1089-PA | 1..542 | 1..542 | 2910 | 100 | Plus |
alpha-Est5-PB | 543 | CG1089-PB | 1..543 | 1..542 | 2898 | 99.8 | Plus |
alpha-Est2-PB | 566 | CG2505-PB | 32..565 | 9..541 | 1408 | 51.4 | Plus |
alpha-Est2-PA | 566 | CG2505-PA | 32..565 | 9..541 | 1408 | 51.4 | Plus |
CG6018-PA | 566 | CG6018-PA | 31..565 | 8..541 | 1393 | 51.1 | Plus |