Clone BO07854 Report

Search the DGRC for BO07854

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:78
Well:54
Vector:pDNR-Dual
Associated Gene/Transcriptalpha-Est5-RA
Protein status:BO07854.pep: validated full length
Sequenced Size:1660

Clone Sequence Records

BO07854.3prime Sequence

827 bp (738 high quality bases) assembled on 2006-01-06

> BO07854.3prime
ATGGTCTAGAAAGCTTGCGATCAATTGATTTGGCTTATACAAGTTGTCCC
AAATTTGTAGTTTTTCATACTCGGGCAAATCTATTATTGTAACATCGCTG
CTGATGTTAATAACACGCTTGGGATCATTCTTGGTAGATGGTTTCCACTC
CAAGTGGCCAATCTCTGGGCAATTGGGATTGGAGGTCGCAGCGAATGCCG
TCCAAATGCCAATCATTCTTTCGATAGTTCGATATTCCGCAGATGTCTTA
TCCAGTTTCCAAGAGCCCGCGTTCCGGAACAAATAGCTCAGGTCATCGGC
GTGGGCCACACCAGTCTTAATTTTATCTCCACAGAATTTAGCCCGGTAGA
AGTTGAAGTTCGGCGAATCAAAGTCGAAGCGATAGTAATATGTGGGTGCT
TTTGCATAGGTAAGTCTGGCGTTAAAGGTGCGATTAAAGCCGTGCCAAAA
TATTTTGTAGGAATAAAAATCGAGCATATTCAAAAGTAGCTCTGAGCTGG
GTGGCGAATATCCGAAGTAGGCCTTCATCAGACGCTGGCTGTACTCCAGA
TTCTCTTTCTCGCTACTGACCGTACGCACATCAACCGGCACCAGCCTGGT
GGGATCCTGGCTTAGGCTATCCAATGCCTTGAGATTGGCCGACACGGCTG
GATACATGAAAAGACCCTCGAAGGAGGTTCCACCCAACATGACTGGAAAA
TTGTTGGACCACGCATCTCGGGCCATCTCTACTGGCGGTTTGGGCACCAC
GCAATCCTCACCCACATATGCCTCCACAGTGGGTCCAAAGGCGAAGAGCA
GACCGTTCCTCCGGTGCTCGGGTGTTA

BO07854.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:11:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1089-PA 1629 alpha-Est5-RA 818..1626 827..19 4045 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est5-RA 1754 CG1089-RA 908..1716 827..19 4045 100 Minus
alpha-Est5-RB 2490 CG1089-RB 911..1719 827..19 4045 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7534267..7534716 19..468 2250 100 Plus
3R 32079331 3R 7534802..7535160 469..827 1795 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:59:55 has no hits.

BO07854.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:02 Download gff for BO07854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1089-PA 819..1629 15..826 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:28 Download gff for BO07854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1089-PA 819..1629 15..826 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:08:40 Download gff for BO07854.3prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est5-RB 912..1724 13..826 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:35:23 Download gff for BO07854.3prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est5-RB 912..1724 13..826 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:35:23 Download gff for BO07854.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7534262..7534716 13..468 99 <- Plus
3R 7534802..7535159 469..826 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:08:40 Download gff for BO07854.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3359984..3360438 13..468 99 <- Plus
arm_3R 3360524..3360881 469..826 100   Plus

BO07854.5prime Sequence

895 bp (760 high quality bases) assembled on 2006-01-06

> BO07854.5prime
GAAGTTATCAGTCGACATGATGTCAAAGGAAAGCCTGGAAACTTGCGAAC
TTACTCTGCCCGTGGGCCAAATTAAGGGCGTCAAACGCCTTAGTCTTTAC
GACGATCCCTACTTCAGCTTCGAGAAGATCCCCTTTGCGAAGCCCCCGTT
GGGAGAACTGAGATTTAGGGCCCCCGTGCCAGCAGATCCGTGGAGCGGCG
TTCTGGACTGCACCCACTATGCAGAGAAGCCAACCCAGAGGGGCTTACTG
ACCCGTGAAATCGAAGGCGGCGAGGATTGTCTGTATCTGAACGTCTATTC
CAAGCAGCTGAAAAGTGAGAAGCCATTGCCGGTGATGGTGTACATTTATG
GCGGGGCCTTCACCGTAGGAGAGGCCACCCGCGAATTGTACGGCCCGGAC
TATTTTATGACCAAAGATGTTGTTCTTGTGACGCTTAACTATCGCGTGGA
TTGTTTGGGATTCCTATCGCTCAAGGACCCGAGTCTGAAAGTTCCCGGAA
ACGCAGGACTCAAGGACCAAGTGCTAGCTCTCAAGTGGGTCAAGCAGTAC
ATCTCCAACTTCAATGGCGATGATAGTAATATTACGGTATTCGGAGAGAG
CGCCGGAGGTTGCTCCACCCACTTCATGATGTGTACGGAACAGACCAGGG
GACTGTTTCACAAGGCCATTCCCATGTCAGGAACAGTGCACAACTACTGG
GCCAATAATCCGGCCGAAGACTTTGCCTTTCGCCTGGCTCAGCAGAATGG
TTTCACTGGCGAAAATGACGACGCCAAGGTACTGGAATATCTCCAAGGAG
TTCCGGCTAGAGATTTGGTGAACCATAATTTGCTAACACCCGAGCACCGG
AGGAACGGTCTGCTCTTCGCCTTTGGACCACTGTGGAGGCATATG

BO07854.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1089-PA 1629 alpha-Est5-RA 1..863 17..879 4315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:46:54
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est5-RA 1754 CG1089-RA 91..970 17..895 4375 99.9 Plus
alpha-Est5-RB 2490 CG1089-RB 91..973 17..895 4335 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:46:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7535098..7535536 895..458 2145 99.8 Minus
3R 32079331 3R 7535946..7536221 307..32 1380 100 Minus
3R 32079331 3R 7535732..7535885 459..306 770 100 Minus
Blast to na_te.dros performed 2015-02-09 19:46:51
Subject Length Description Subject Range Query Range Score Percent Strand
Doc3-element 4740 Doc3-element DOC3 4740bp 1063..1101 295..333 114 76.9 Plus

BO07854.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:03 Download gff for BO07854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1089-PA 1..880 17..895 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:30 Download gff for BO07854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1089-PA 1..880 17..895 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:11:04 Download gff for BO07854.5prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est5-RA 91..970 17..895 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:21:43 Download gff for BO07854.5prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est5-RA 91..970 17..895 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:21:43 Download gff for BO07854.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7535098..7535535 459..895 99 <- Minus
3R 7535733..7535883 308..458 100 <- Minus
3R 7535946..7536219 34..307 100 <- Minus
3R 7536284..7536300 17..33 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:11:04 Download gff for BO07854.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3360820..3361257 459..895 99 <- Minus
arm_3R 3361455..3361605 308..458 100 <- Minus
arm_3R 3361668..3361941 34..307 100 <- Minus
arm_3R 3362006..3362022 17..33 100   Minus

BO07854.complete Sequence

1660 bp (1660 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630964

> BO07854.complete
GAAGTTATCAGTCGACATGATGTCAAAGGAAAGCCTGGAAACTTGCGAAC
TTACTCTGCCCGTGGGCCAAATTAAGGGCGTCAAACGCCTTAGTCTTTAC
GACGATCCCTACTTCAGCTTCGAGAAGATCCCCTTTGCGAAGCCCCCGTT
GGGAGAACTGAGATTTAGGGCCCCCGTGCCAGCAGATCCGTGGAGCGGCG
TTCTGGACTGCACCCACTATGCAGAGAAGCCAACCCAGAGGGGCTTACTG
ACCCGTGAAATCGAAGGCGGCGAGGATTGTCTGTATCTGAACGTCTATTC
CAAGCAGCTGAAAAGTGAGAAGCCATTGCCGGTGATGGTGTACATTTATG
GCGGGGCCTTCACCGTAGGAGAGGCCACCCGCGAATTGTACGGCCCGGAC
TATTTTATGACCAAAGATGTTGTTCTTGTGACGCTTAACTATCGCGTGGA
TTGTTTGGGATTCCTATCGCTCAAGGACCCGAGTCTGAAAGTTCCCGGAA
ACGCAGGACTCAAGGACCAAGTGCTAGCTCTCAAGTGGGTCAAGCAGTAC
ATCTCCAACTTCAATGGCGATGATAGTAATATTACGGTATTCGGAGAGAG
CGCCGGAGGTTGCTCCACCCACTTCATGATGTGTACGGAACAGACCAGGG
GACTGTTTCACAAGGCCATTCCCATGTCAGGAACAGTGCACAACTACTGG
GCCAATAATCCGGCCGAAGACTTTGCCTTTCGCCTGGCTCAGCAGAATGG
TTTCACTGGCGAAAATGACGACGCCAAGGTACTGGAATATCTCCAAGGAG
TTCCGGCTAGAGATTTGGTGAACCATAATTTGCTAACACCCGAGCACCGG
AGGAACGGTCTGCTCTTCGCCTTTGGACCCACTGTGGAGGCATATGTGGG
TGAGGATTGCGTGGTGCCCAAACCGCCAGTAGAGATGGCCCGAGATGCGT
GGTCCAACAATTTTCCAGTCATGTTGGGTGGAACCTCCTTCGAGGGTCTT
TTCATGTATCCAGCCGTGTCGGCCAATCTCAAGGCATTGGATAGCCTAAG
CCAGGATCCCACCAGGCTGGTGCCGGTTGATGTGCGTACGGTCAGTAGCG
AGAAAGAGAATCTGGAGTACAGCCAGCGTCTGATGAAGGCCTACTTCGGA
TATTCGCCACCCAGCTCAGAGCTACTTTTGAATATGCTCGATTTTTATTC
CTACAAAATATTTTGGCACGGCTTTAATCGCACCTTTAACGCCAGACTTA
CCTATGCAAAAGCACCCACATATTACTATCGCTTCGACTTTGATTCGCCG
AACTTCAACTTCTACCGGGCTAAATTCTGTGGAGATAAAATTAAGACTGG
TGTGGCCCACGCCGATGACCTGAGCTATTTGTTCCGGAACGCGGGCTCTT
GGAAACTGGATAAGACATCTGCGGAATATCGAACTATCGAAAGAATGATT
GGCATTTGGACGGCATTCGCTGCGACCTCCAATCCCAATTGCCCAGAGAT
TGGCCACTTGGAGTGGAAACCATCTACCAAGAATGATCCCAAGCGTGTTA
TTAACATCAGCAGCGATGTTACAATAATAGATTTGCCCGAGTATGAAAAA
CTACAAATTTGGGACAACTTGTATAAGCCAAATCAATTGATCGCAAGCTT
TCTAGACCAT

BO07854.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:15:38
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est5-RA 1629 CG1089-PA 1..1626 17..1642 8130 100 Plus
alpha-Est5-RB 1632 CG1089-PB 1..1629 17..1642 8065 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:39
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est5-RA 1754 CG1089-RA 91..1716 17..1642 8130 100 Plus
alpha-Est5-RB 2490 CG1089-RB 91..1719 17..1642 8065 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7534802..7535536 1192..458 3675 100 Minus
3R 32079331 3R 7534267..7534716 1642..1193 2250 100 Minus
3R 32079331 3R 7535946..7536221 307..32 1380 100 Minus
3R 32079331 3R 7535732..7535885 459..306 770 100 Minus
Blast to na_te.dros performed 2014-11-27 14:15:37
Subject Length Description Subject Range Query Range Score Percent Strand
Doc3-element 4740 Doc3-element DOC3 4740bp 1063..1101 295..333 114 76.9 Plus

BO07854.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:58 Download gff for BO07854.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est5-RA 1..1629 17..1646 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:37 Download gff for BO07854.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est5-RA 226..1856 17..1648 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:06 Download gff for BO07854.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est5-RA 91..1716 17..1644 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:58 Download gff for BO07854.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est5-RA 226..1856 17..1648 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:03 Download gff for BO07854.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est5-RA 91..1716 17..1644 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:03 Download gff for BO07854.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7534265..7534716 1193..1644 99 <- Minus
3R 7534802..7535535 459..1192 100 <- Minus
3R 7535733..7535883 308..458 100 <- Minus
3R 7535946..7536219 34..307 100 <- Minus
3R 7536284..7536300 17..33 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:06 Download gff for BO07854.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3359987..3360438 1193..1644 99 <- Minus
arm_3R 3360524..3361257 459..1192 100 <- Minus
arm_3R 3361455..3361605 308..458 100 <- Minus
arm_3R 3361668..3361941 34..307 100 <- Minus
arm_3R 3362006..3362022 17..33 100   Minus

BO07854.pep Sequence

Translation from 16 to 1660

> BO07854.pep
MMSKESLETCELTLPVGQIKGVKRLSLYDDPYFSFEKIPFAKPPLGELRF
RAPVPADPWSGVLDCTHYAEKPTQRGLLTREIEGGEDCLYLNVYSKQLKS
EKPLPVMVYIYGGAFTVGEATRELYGPDYFMTKDVVLVTLNYRVDCLGFL
SLKDPSLKVPGNAGLKDQVLALKWVKQYISNFNGDDSNITVFGESAGGCS
THFMMCTEQTRGLFHKAIPMSGTVHNYWANNPAEDFAFRLAQQNGFTGEN
DDAKVLEYLQGVPARDLVNHNLLTPEHRRNGLLFAFGPTVEAYVGEDCVV
PKPPVEMARDAWSNNFPVMLGGTSFEGLFMYPAVSANLKALDSLSQDPTR
LVPVDVRTVSSEKENLEYSQRLMKAYFGYSPPSSELLLNMLDFYSYKIFW
HGFNRTFNARLTYAKAPTYYYRFDFDSPNFNFYRAKFCGDKIKTGVAHAD
DLSYLFRNAGSWKLDKTSAEYRTIERMIGIWTAFAATSNPNCPEIGHLEW
KPSTKNDPKRVINISSDVTIIDLPEYEKLQIWDNLYKPNQLIASFLDH

BO07854.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:37:03
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est5-PA 542 CG1089-PA 1..542 1..542 2910 100 Plus
alpha-Est5-PB 543 CG1089-PB 1..543 1..542 2898 99.8 Plus
alpha-Est2-PB 566 CG2505-PB 32..565 9..541 1408 51.4 Plus
alpha-Est2-PA 566 CG2505-PA 32..565 9..541 1408 51.4 Plus
CG6018-PA 566 CG6018-PA 31..565 8..541 1393 51.1 Plus