Clone Sequence Records
BO07856.3prime Sequence
898 bp (866 high quality bases) assembled on 2006-01-06
> BO07856.3prime
ATGGTCTAGAAAGCTTGCGTTCTCCTTCGATTCGCTGCTCTCCTCCGACT
CCTTGGACTCTGAGGACTCATCGACCTTGGACTCGGACTTGTCAGACTTT
TCCTCCGACGACTTTTTGGGCTCGGCCGATGGTGACTGGGCAATGGGCTT
GGCAATGGCCTCCTCGCCCTTGACCACGGTCTCGGCAGCTGGTGCTTCGT
CGATCTTCTTGGCCTCGGGCACGGCAGCAGGGGCAACGGCGGCGGTTGGC
TCTGGTGCTCCAGCTGGTGCTGCTGTCTCCTCCGTCTTCTTCTGTTCTGG
CAGGGCCTTGGCAGCGGTATCAGCGGCTGGCTGTTCCTTCTCCTGCTCCT
TGACGGCCTCCGTCACCTTGGTGGCACCGGCCGGAGCAAGTGGGGCATTG
GTCTTTAGGACGGGAGCGGATTCGGCAACGGTTTCGGTGCTCTTCTGCTG
GTCAACTGGCTTGGGGGCCTCACCGGACTTGGCCTGGGCAGCCTGGGCGG
CAGGAGAAGCAGCCGCAGCAGCAGGGGACGACTCGATGGACTTCTTCTCG
GGAGCAATCACCTGGATGTTGGAGTCCGACTTGGTGGCGGCTTCAGGAGC
GGCGGTGGGTGTGGCTTCAGCGGCCTTGGCTGGCTCCTCGGCAACAGCAG
CGTCCTTCTTGGCATCCTTCTGTTCGATTTCGTTGATCCTCTCCTGGCGG
GCGGGCTGCTCGGGCACGGGTGTCTCTTTCTCGGCGGCCACTACGGCGGG
AATCGCTGGCTCCTCGGCGGACTTGGCATCGATCTTGGGCTCCTGGGGCT
TGACCTCGTCGACAACTTGCTTCTGCACCTCGGCATTGGCGGCTGGGGCT
TCGGGGGGCTGTTCAATGGCCTTGGTGGCCTGGGGCTGAGCCTCGACA
BO07856.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7088-PB | 1329 | bnb-RB | 447..1326 | 898..19 | 4375 | 99.8 | Minus |
CG7088-PC | 1329 | bnb-RC | 447..1326 | 898..19 | 4375 | 99.8 | Minus |
CG7088-PA | 1329 | bnb-RA | 447..1326 | 898..19 | 4375 | 99.8 | Minus |
CG7088-PD | 1329 | bnb-RD | 447..1326 | 898..19 | 4375 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:01:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bnb-RD | 1853 | CG7088-RD | 526..1405 | 898..19 | 4385 | 99.9 | Minus |
bnb-RA | 2095 | CG7088-RA | 768..1647 | 898..19 | 4385 | 99.9 | Minus |
bnb-RC | 1947 | CG7088-RC | 620..1499 | 898..19 | 4385 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:01:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18794968..18795847 | 19..898 | 4385 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-13 00:01:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 659..786 | 276..156 | 120 | 57.8 | Minus |
BO07856.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:06 Download gff for
BO07856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bnb-PD | 448..1329 | 18..897 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:34 Download gff for
BO07856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7088-PD | 448..1329 | 18..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:30:11 Download gff for
BO07856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bnb-RC | 621..1499 | 19..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:39:36 Download gff for
BO07856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bnb-RC | 621..1499 | 19..897 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:39:36 Download gff for
BO07856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18794968..18795846 | 19..897 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:30:11 Download gff for
BO07856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18689001..18689879 | 19..897 | 99 | | Plus |
BO07856.5prime Sequence
843 bp (811 high quality bases) assembled on 2006-01-06
> BO07856.5prime
GAAGTTATCAGTCGACATGAAGTGCCAACTGCTTTTCGTGGCCACCGTGT
GCCTGGCCAGCGTTTGGGCGCTTCCCGTGCCCGACGAGGAGGTGGCCATC
CAGCCGGACAGCGGTGCCAAGGCCGAGCTCCTGACCAAGACCGTGCTGCC
CACCGCCGTTGAGCCTGCTCCCTTGAAGCCCGAGGCCGAGAAGCCGGCAG
AGACCAAGACCATCGAAGCCAAGGCCGCCGTTCCAGAGCAGCCCGACGTC
AACGCCAACCCATCACCCAGCACTCCTGCCGCCGAGCCAGCCAAGGAGAT
CAACAGCGTGGAGCTCAAGTCGAGCGCGCCGGACGTAGAGACCGCTCCGG
CCATTCCTGAGAAGAAGACCCTGCCCGAGGAGGCCAAGCCCGCCCAGGAG
AACGCTCCCGTTGAGGCCGAGAAGAAGCAGGAGAAGACCGCCCGCACGGA
GGCGGAACCCACTGTCGAGGCTCAGCCCCAGGCCACCAAGGCCATTGAAC
AGGCCCCCGAAGCCCCAGCCGCCAATGCCGAGGTGCAGAAGCAAGTTGTC
GACGAGGTCAAGCCCCAGGAGCCCAAGATCGATGCCAAGTCCGCCGAGGA
GCCAGCGATTCCCGCCGTAGTGGCCGCCGAGAAAGAGACACCCGTGCCCG
AGCAGCCCGCCCGCCAGGAGAGGATCAACGAAATCGAACAGAAGGATGCC
AAGAAGGACGCTGCTGTTGCCGAGGAGCCAGCCAAGGCCGCTGAAGCCAC
ACCCACCGCCGCTCCTGAAGCCGCCACCAAGTCGGACTCCAACATCCAGG
TGATTGCTCCCGAGAAGAAGTCCATCGAGTCGTCCCCTGCTGC
BO07856.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7088-PB | 1329 | bnb-RB | 1..827 | 17..843 | 4135 | 100 | Plus |
CG7088-PC | 1329 | bnb-RC | 1..827 | 17..843 | 4135 | 100 | Plus |
CG7088-PA | 1329 | bnb-RA | 1..827 | 17..843 | 4135 | 100 | Plus |
CG7088-PD | 1329 | bnb-RD | 1..827 | 17..843 | 4135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:41:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bnb-RD | 1853 | CG7088-RD | 80..906 | 17..843 | 4135 | 100 | Plus |
bnb-RA | 2095 | CG7088-RA | 322..1148 | 17..843 | 4135 | 100 | Plus |
bnb-RC | 1947 | CG7088-RC | 174..1000 | 17..843 | 4135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:41:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18795467..18796293 | 843..17 | 4135 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:41:43 has no hits.
BO07856.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:07 Download gff for
BO07856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bnb-PD | 1..827 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:36 Download gff for
BO07856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7088-PD | 1..827 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:44:54 Download gff for
BO07856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bnb-RC | 165..1000 | 7..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:00 Download gff for
BO07856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bnb-RC | 165..1000 | 7..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:00 Download gff for
BO07856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18795467..18796298 | 8..843 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:44:54 Download gff for
BO07856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18689500..18690331 | 8..843 | 99 | | Minus |
BO07856.complete Sequence
1360 bp (1360 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630965
> BO07856.complete
GAAGTTATCAGTCGACATGAAGTGCCAACTGCTTTTCGTGGCCACCGTGT
GCCTGGCCAGCGTTTGGGCGCTTCCCGTGCCCGACGAGGAGGTGGCCATC
CAGCCGGACAGCGGTGCCAAGGCCGAGCTCCTGACCAAGACCGTGCTGCC
CACCGCCGTTGAGCCTGCTCCCTTGAAGCCCGAGGCCGAGAAGCCGGCAG
AGACCAAGACCATCGAAGCCAAGGCCGCCGTTCCAGAGCAGCCCGACGTC
AACGCCAACCCATCACCCAGCACTCCTGCCGCCGAGCCAGCCAAGGAGAT
CAACAGCGTGGAGCTCAAGTCGAGCGCGCCGGACGTAGAGACCGCTCCGG
CCATTCCTGAGAAGAAGACCCTGCCCGAGGAGGCCAAGCCCGCCCAGGAG
AACGCTCCCGTTGAGGCCGAGAAGAAGCAGGAGAAGACCGCCCGCACGGA
GGCGGAACCCACTGTCGAGGCTCAGCCCCAGGCCACCAAGGCCATTGAAC
AGGCCCCCGAAGCCCCAGCCGCCAATGCCGAGGTGCAGAAGCAAGTTGTC
GACGAGGTCAAGCCCCAGGAGCCCAAGATCGATGCCAAGTCCGCCGAGGA
GCCAGCGATTCCCGCCGTAGTGGCCGCCGAGAAAGAGACACCCGTGCCCG
AGCAGCCCGCCCGCCAGGAGAGGATCAACGAAATCGAACAGAAGGATGCC
AAGAAGGACGCTGCTGTTGCCGAGGAGCCAGCCAAGGCCGCTGAAGCCAC
ACCCACCGCCGCTCCTGAAGCCGCCACCAAGTCGGACTCCAACATCCAGG
TGATTGCTCCCGAGAAGAAGTCCATCGAGTCGTCCCCTGCTGCTGCGGCT
GCTTCTCCTGCCGCCCAGGCTGCCCAGGCCAAGTCCGGTGAGGCCCCCAA
GCCAGTTGACCAGCAGAAGAGCACCGAAACCGTTGCCGAATCCGCTCCCG
TCCTAAAGACCAATGCCCCACTTGCTCCGGCCGGTGCCACCAAGGTGACG
GAGGCCGTCAAGGAGCAGGAGAAGGAACAGCCAGCCGCTGATACCGCTGC
CAAGGCCCTGCCAGAACAGAAGAAGACGGAGGAGACAGCAGCACCAGCTG
GAGCACCAGAGCCAACCGCCGCCGTTGCCCCTGCTGCCGTGCCCGAGGCC
AAGAAGATCGACGAAGCACCAGCTGCCGAGACCGTGGTCAAGGGCGAGGA
GGCCATTGCCAAGCCCATTGCCCAGTCACCATCGGCCGAGCCCAAAAAGT
CGTCGGAGGAAAAGTCTGACAAGTCCGAGTCCAAGGTCGATGAGTCCTCA
GAGTCCAAGGAGTCGGAGGAGAGCAGCGAATCGAAGGAGAACGCAAGCTT
TCTAGACCAT
BO07856.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:42:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bnb-RD | 1329 | CG7088-PD | 1..1326 | 17..1342 | 6630 | 100 | Plus |
bnb-RA | 1329 | CG7088-PA | 1..1326 | 17..1342 | 6630 | 100 | Plus |
bnb-RC | 1329 | CG7088-PC | 1..1326 | 17..1342 | 6630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:42:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bnb-RD | 1853 | CG7088-RD | 80..1405 | 17..1342 | 6630 | 100 | Plus |
bnb-RA | 2095 | CG7088-RA | 322..1647 | 17..1342 | 6630 | 100 | Plus |
bnb-RC | 1947 | CG7088-RC | 174..1499 | 17..1342 | 6630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:42:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18794968..18796293 | 1342..17 | 6630 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:42:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 659..786 | 1085..1205 | 120 | 57.8 | Plus |
BO07856.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:22 Download gff for
BO07856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bnb-RA | 1..1329 | 17..1343 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:56 Download gff for
BO07856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bnb-RA | 317..1647 | 8..1342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:32:15 Download gff for
BO07856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bnb-RC | 174..1499 | 17..1344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:22 Download gff for
BO07856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bnb-RA | 317..1647 | 8..1342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:41 Download gff for
BO07856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bnb-RC | 174..1499 | 17..1344 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:41 Download gff for
BO07856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18794966..18796293 | 17..1344 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:32:15 Download gff for
BO07856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18688999..18690326 | 17..1344 | 99 | | Minus |
BO07856.pep Sequence
Translation from 16 to 1360
> BO07856.pep
MKCQLLFVATVCLASVWALPVPDEEVAIQPDSGAKAELLTKTVLPTAVEP
APLKPEAEKPAETKTIEAKAAVPEQPDVNANPSPSTPAAEPAKEINSVEL
KSSAPDVETAPAIPEKKTLPEEAKPAQENAPVEAEKKQEKTARTEAEPTV
EAQPQATKAIEQAPEAPAANAEVQKQVVDEVKPQEPKIDAKSAEEPAIPA
VVAAEKETPVPEQPARQERINEIEQKDAKKDAAVAEEPAKAAEATPTAAP
EAATKSDSNIQVIAPEKKSIESSPAAAAASPAAQAAQAKSGEAPKPVDQQ
KSTETVAESAPVLKTNAPLAPAGATKVTEAVKEQEKEQPAADTAAKALPE
QKKTEETAAPAGAPEPTAAVAPAAVPEAKKIDEAPAAETVVKGEEAIAKP
IAQSPSAEPKKSSEEKSDKSESKVDESSESKESEESSESKENASFLDH
BO07856.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bnb-PD | 442 | CG7088-PD | 1..442 | 1..442 | 2174 | 100 | Plus |
bnb-PA | 442 | CG7088-PA | 1..442 | 1..442 | 2174 | 100 | Plus |
bnb-PC | 442 | CG7088-PC | 1..442 | 1..442 | 2174 | 100 | Plus |
bnb-PB | 442 | CG7088-PB | 1..442 | 1..442 | 2174 | 100 | Plus |
Nopp140-PF | 685 | CG7421-PF | 141..546 | 49..444 | 256 | 26.2 | Plus |