Clone BO07856 Report

Search the DGRC for BO07856

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:78
Well:56
Vector:pDNR-Dual
Associated Gene/Transcriptbnb-RA
Protein status:BO07856.pep: validated full length
Sequenced Size:1360

Clone Sequence Records

BO07856.3prime Sequence

898 bp (866 high quality bases) assembled on 2006-01-06

> BO07856.3prime
ATGGTCTAGAAAGCTTGCGTTCTCCTTCGATTCGCTGCTCTCCTCCGACT
CCTTGGACTCTGAGGACTCATCGACCTTGGACTCGGACTTGTCAGACTTT
TCCTCCGACGACTTTTTGGGCTCGGCCGATGGTGACTGGGCAATGGGCTT
GGCAATGGCCTCCTCGCCCTTGACCACGGTCTCGGCAGCTGGTGCTTCGT
CGATCTTCTTGGCCTCGGGCACGGCAGCAGGGGCAACGGCGGCGGTTGGC
TCTGGTGCTCCAGCTGGTGCTGCTGTCTCCTCCGTCTTCTTCTGTTCTGG
CAGGGCCTTGGCAGCGGTATCAGCGGCTGGCTGTTCCTTCTCCTGCTCCT
TGACGGCCTCCGTCACCTTGGTGGCACCGGCCGGAGCAAGTGGGGCATTG
GTCTTTAGGACGGGAGCGGATTCGGCAACGGTTTCGGTGCTCTTCTGCTG
GTCAACTGGCTTGGGGGCCTCACCGGACTTGGCCTGGGCAGCCTGGGCGG
CAGGAGAAGCAGCCGCAGCAGCAGGGGACGACTCGATGGACTTCTTCTCG
GGAGCAATCACCTGGATGTTGGAGTCCGACTTGGTGGCGGCTTCAGGAGC
GGCGGTGGGTGTGGCTTCAGCGGCCTTGGCTGGCTCCTCGGCAACAGCAG
CGTCCTTCTTGGCATCCTTCTGTTCGATTTCGTTGATCCTCTCCTGGCGG
GCGGGCTGCTCGGGCACGGGTGTCTCTTTCTCGGCGGCCACTACGGCGGG
AATCGCTGGCTCCTCGGCGGACTTGGCATCGATCTTGGGCTCCTGGGGCT
TGACCTCGTCGACAACTTGCTTCTGCACCTCGGCATTGGCGGCTGGGGCT
TCGGGGGGCTGTTCAATGGCCTTGGTGGCCTGGGGCTGAGCCTCGACA

BO07856.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7088-PB 1329 bnb-RB 447..1326 898..19 4375 99.8 Minus
CG7088-PC 1329 bnb-RC 447..1326 898..19 4375 99.8 Minus
CG7088-PA 1329 bnb-RA 447..1326 898..19 4375 99.8 Minus
CG7088-PD 1329 bnb-RD 447..1326 898..19 4375 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:01:23
Subject Length Description Subject Range Query Range Score Percent Strand
bnb-RD 1853 CG7088-RD 526..1405 898..19 4385 99.9 Minus
bnb-RA 2095 CG7088-RA 768..1647 898..19 4385 99.9 Minus
bnb-RC 1947 CG7088-RC 620..1499 898..19 4385 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:01:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18794968..18795847 19..898 4385 99.9 Plus
Blast to na_te.dros performed 2015-02-13 00:01:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 659..786 276..156 120 57.8 Minus

BO07856.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:06 Download gff for BO07856.3prime
Subject Subject Range Query Range Percent Splice Strand
bnb-PD 448..1329 18..897 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:34 Download gff for BO07856.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7088-PD 448..1329 18..897 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:30:11 Download gff for BO07856.3prime
Subject Subject Range Query Range Percent Splice Strand
bnb-RC 621..1499 19..897 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:39:36 Download gff for BO07856.3prime
Subject Subject Range Query Range Percent Splice Strand
bnb-RC 621..1499 19..897 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:39:36 Download gff for BO07856.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18794968..18795846 19..897 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:30:11 Download gff for BO07856.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18689001..18689879 19..897 99   Plus

BO07856.5prime Sequence

843 bp (811 high quality bases) assembled on 2006-01-06

> BO07856.5prime
GAAGTTATCAGTCGACATGAAGTGCCAACTGCTTTTCGTGGCCACCGTGT
GCCTGGCCAGCGTTTGGGCGCTTCCCGTGCCCGACGAGGAGGTGGCCATC
CAGCCGGACAGCGGTGCCAAGGCCGAGCTCCTGACCAAGACCGTGCTGCC
CACCGCCGTTGAGCCTGCTCCCTTGAAGCCCGAGGCCGAGAAGCCGGCAG
AGACCAAGACCATCGAAGCCAAGGCCGCCGTTCCAGAGCAGCCCGACGTC
AACGCCAACCCATCACCCAGCACTCCTGCCGCCGAGCCAGCCAAGGAGAT
CAACAGCGTGGAGCTCAAGTCGAGCGCGCCGGACGTAGAGACCGCTCCGG
CCATTCCTGAGAAGAAGACCCTGCCCGAGGAGGCCAAGCCCGCCCAGGAG
AACGCTCCCGTTGAGGCCGAGAAGAAGCAGGAGAAGACCGCCCGCACGGA
GGCGGAACCCACTGTCGAGGCTCAGCCCCAGGCCACCAAGGCCATTGAAC
AGGCCCCCGAAGCCCCAGCCGCCAATGCCGAGGTGCAGAAGCAAGTTGTC
GACGAGGTCAAGCCCCAGGAGCCCAAGATCGATGCCAAGTCCGCCGAGGA
GCCAGCGATTCCCGCCGTAGTGGCCGCCGAGAAAGAGACACCCGTGCCCG
AGCAGCCCGCCCGCCAGGAGAGGATCAACGAAATCGAACAGAAGGATGCC
AAGAAGGACGCTGCTGTTGCCGAGGAGCCAGCCAAGGCCGCTGAAGCCAC
ACCCACCGCCGCTCCTGAAGCCGCCACCAAGTCGGACTCCAACATCCAGG
TGATTGCTCCCGAGAAGAAGTCCATCGAGTCGTCCCCTGCTGC

BO07856.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7088-PB 1329 bnb-RB 1..827 17..843 4135 100 Plus
CG7088-PC 1329 bnb-RC 1..827 17..843 4135 100 Plus
CG7088-PA 1329 bnb-RA 1..827 17..843 4135 100 Plus
CG7088-PD 1329 bnb-RD 1..827 17..843 4135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
bnb-RD 1853 CG7088-RD 80..906 17..843 4135 100 Plus
bnb-RA 2095 CG7088-RA 322..1148 17..843 4135 100 Plus
bnb-RC 1947 CG7088-RC 174..1000 17..843 4135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18795467..18796293 843..17 4135 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:41:43 has no hits.

BO07856.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:07 Download gff for BO07856.5prime
Subject Subject Range Query Range Percent Splice Strand
bnb-PD 1..827 17..843 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:36 Download gff for BO07856.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7088-PD 1..827 17..843 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:44:54 Download gff for BO07856.5prime
Subject Subject Range Query Range Percent Splice Strand
bnb-RC 165..1000 7..843 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:00 Download gff for BO07856.5prime
Subject Subject Range Query Range Percent Splice Strand
bnb-RC 165..1000 7..843 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:00 Download gff for BO07856.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18795467..18796298 8..843 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:44:54 Download gff for BO07856.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18689500..18690331 8..843 99   Minus

BO07856.complete Sequence

1360 bp (1360 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630965

> BO07856.complete
GAAGTTATCAGTCGACATGAAGTGCCAACTGCTTTTCGTGGCCACCGTGT
GCCTGGCCAGCGTTTGGGCGCTTCCCGTGCCCGACGAGGAGGTGGCCATC
CAGCCGGACAGCGGTGCCAAGGCCGAGCTCCTGACCAAGACCGTGCTGCC
CACCGCCGTTGAGCCTGCTCCCTTGAAGCCCGAGGCCGAGAAGCCGGCAG
AGACCAAGACCATCGAAGCCAAGGCCGCCGTTCCAGAGCAGCCCGACGTC
AACGCCAACCCATCACCCAGCACTCCTGCCGCCGAGCCAGCCAAGGAGAT
CAACAGCGTGGAGCTCAAGTCGAGCGCGCCGGACGTAGAGACCGCTCCGG
CCATTCCTGAGAAGAAGACCCTGCCCGAGGAGGCCAAGCCCGCCCAGGAG
AACGCTCCCGTTGAGGCCGAGAAGAAGCAGGAGAAGACCGCCCGCACGGA
GGCGGAACCCACTGTCGAGGCTCAGCCCCAGGCCACCAAGGCCATTGAAC
AGGCCCCCGAAGCCCCAGCCGCCAATGCCGAGGTGCAGAAGCAAGTTGTC
GACGAGGTCAAGCCCCAGGAGCCCAAGATCGATGCCAAGTCCGCCGAGGA
GCCAGCGATTCCCGCCGTAGTGGCCGCCGAGAAAGAGACACCCGTGCCCG
AGCAGCCCGCCCGCCAGGAGAGGATCAACGAAATCGAACAGAAGGATGCC
AAGAAGGACGCTGCTGTTGCCGAGGAGCCAGCCAAGGCCGCTGAAGCCAC
ACCCACCGCCGCTCCTGAAGCCGCCACCAAGTCGGACTCCAACATCCAGG
TGATTGCTCCCGAGAAGAAGTCCATCGAGTCGTCCCCTGCTGCTGCGGCT
GCTTCTCCTGCCGCCCAGGCTGCCCAGGCCAAGTCCGGTGAGGCCCCCAA
GCCAGTTGACCAGCAGAAGAGCACCGAAACCGTTGCCGAATCCGCTCCCG
TCCTAAAGACCAATGCCCCACTTGCTCCGGCCGGTGCCACCAAGGTGACG
GAGGCCGTCAAGGAGCAGGAGAAGGAACAGCCAGCCGCTGATACCGCTGC
CAAGGCCCTGCCAGAACAGAAGAAGACGGAGGAGACAGCAGCACCAGCTG
GAGCACCAGAGCCAACCGCCGCCGTTGCCCCTGCTGCCGTGCCCGAGGCC
AAGAAGATCGACGAAGCACCAGCTGCCGAGACCGTGGTCAAGGGCGAGGA
GGCCATTGCCAAGCCCATTGCCCAGTCACCATCGGCCGAGCCCAAAAAGT
CGTCGGAGGAAAAGTCTGACAAGTCCGAGTCCAAGGTCGATGAGTCCTCA
GAGTCCAAGGAGTCGGAGGAGAGCAGCGAATCGAAGGAGAACGCAAGCTT
TCTAGACCAT

BO07856.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:42:20
Subject Length Description Subject Range Query Range Score Percent Strand
bnb-RD 1329 CG7088-PD 1..1326 17..1342 6630 100 Plus
bnb-RA 1329 CG7088-PA 1..1326 17..1342 6630 100 Plus
bnb-RC 1329 CG7088-PC 1..1326 17..1342 6630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
bnb-RD 1853 CG7088-RD 80..1405 17..1342 6630 100 Plus
bnb-RA 2095 CG7088-RA 322..1647 17..1342 6630 100 Plus
bnb-RC 1947 CG7088-RC 174..1499 17..1342 6630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:42:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18794968..18796293 1342..17 6630 100 Minus
Blast to na_te.dros performed 2014-11-27 13:42:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 659..786 1085..1205 120 57.8 Plus

BO07856.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:22 Download gff for BO07856.complete
Subject Subject Range Query Range Percent Splice Strand
bnb-RA 1..1329 17..1343 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:56 Download gff for BO07856.complete
Subject Subject Range Query Range Percent Splice Strand
bnb-RA 317..1647 8..1342 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:32:15 Download gff for BO07856.complete
Subject Subject Range Query Range Percent Splice Strand
bnb-RC 174..1499 17..1344 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:22 Download gff for BO07856.complete
Subject Subject Range Query Range Percent Splice Strand
bnb-RA 317..1647 8..1342 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:41 Download gff for BO07856.complete
Subject Subject Range Query Range Percent Splice Strand
bnb-RC 174..1499 17..1344 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:41 Download gff for BO07856.complete
Subject Subject Range Query Range Percent Splice Strand
X 18794966..18796293 17..1344 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:32:15 Download gff for BO07856.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18688999..18690326 17..1344 99   Minus

BO07856.pep Sequence

Translation from 16 to 1360

> BO07856.pep
MKCQLLFVATVCLASVWALPVPDEEVAIQPDSGAKAELLTKTVLPTAVEP
APLKPEAEKPAETKTIEAKAAVPEQPDVNANPSPSTPAAEPAKEINSVEL
KSSAPDVETAPAIPEKKTLPEEAKPAQENAPVEAEKKQEKTARTEAEPTV
EAQPQATKAIEQAPEAPAANAEVQKQVVDEVKPQEPKIDAKSAEEPAIPA
VVAAEKETPVPEQPARQERINEIEQKDAKKDAAVAEEPAKAAEATPTAAP
EAATKSDSNIQVIAPEKKSIESSPAAAAASPAAQAAQAKSGEAPKPVDQQ
KSTETVAESAPVLKTNAPLAPAGATKVTEAVKEQEKEQPAADTAAKALPE
QKKTEETAAPAGAPEPTAAVAPAAVPEAKKIDEAPAAETVVKGEEAIAKP
IAQSPSAEPKKSSEEKSDKSESKVDESSESKESEESSESKENASFLDH

BO07856.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
bnb-PD 442 CG7088-PD 1..442 1..442 2174 100 Plus
bnb-PA 442 CG7088-PA 1..442 1..442 2174 100 Plus
bnb-PC 442 CG7088-PC 1..442 1..442 2174 100 Plus
bnb-PB 442 CG7088-PB 1..442 1..442 2174 100 Plus
Nopp140-PF 685 CG7421-PF 141..546 49..444 256 26.2 Plus