Clone Sequence Records
BO07858.3prime Sequence
959 bp (812 high quality bases) assembled on 2006-01-06
> BO07858.3prime
ATGGTCTAGAAAGCTTGCTTCTGCGGCAGTCACGTCATCATCGGTGGCCA
CTCCATCATCATCATCATCATCGTCCTCGGTGCTCTTCATGCGATCCAAT
TGAAGACGCCGCTCTTGGATGCGAATGCATTTGGGGCAAATCATATTTTT
GCGCGTGAGGCAAACTCGGTGGAAGATGGAATTGCACTGATCACACTTGA
TGCAGCCATCGTCGAAGGGAAAGATCACCTCGTTGTTGCTACAAATCTCG
CAAATGTACGCTTGGGCAAGGCACATGGGGCAGGATCGTATGTGATCATT
GAATGCCTTGAAAACTCCTTGCAGAAATTCGCTCAGCGCTCCAGATTCCA
CCTGGCTGAGATCACTTAGGGAATAGAACTCATTTGACTGGGCCAGATGT
CGCCGGACACCCAGTTGCTGATCCACCAGCTTCAACTCGCTGGCAATCTT
GCAGGCAGCCAGATAGTGGCGCATATGCACCAGATTTTGGCGAAGTTTCT
TTACCGCACACAATTTTTCTACGAACACAAACAGCTTGGGATTGTCCTCC
TCCAAGCGAATGAGCGGTTTATTTAGGAACAACCTAATCTCTTGGAGCGC
CGTGCGCGACACTCTGCGTGGCGAAAAGTCCCAATTGTGGATAATGCGGG
CTGGTATAAAGTTACTGTCGTTCCAGTTGCAGCGAGGGCAGTAGTACAAT
CCACTATAGTCGCATAGACGCGGCTCAATCCAGGTATTTTTTATATTTAG
CATCGTCCCGCACTCGGCGCACTTGTATCCCTGGGAGGCGAGTCCGATTT
CTGGACATATCTCCGAAATGGGATGCTGCCGCTCTGAAACCAGGACATGG
GCACAAACCCTCTTCACGCCATCGATGCACTTCTGATGGGACAGGAATCC
GCAATCGCTGCACACGTACGAGTTCTGCACCACACTCCAAATAATGGTGG
TGCAGTGGT
BO07858.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11534-PA | 1479 | CG11534-RA | 536..1476 | 959..19 | 4655 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:47:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11534-RA | 1637 | CG11534-RA | 613..1553 | 959..19 | 4675 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:46:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12133029..12133750 | 740..19 | 3610 | 100 | Minus |
| 3L | 28110227 | 3L | 12132758..12132976 | 959..741 | 1065 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:47:03 has no hits.
BO07858.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:08 Download gff for
BO07858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11534-PA | 536..1479 | 15..959 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:37 Download gff for
BO07858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11534-PA | 536..1479 | 15..959 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:11:06 Download gff for
BO07858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11534-RA | 613..1558 | 12..959 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:21:45 Download gff for
BO07858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11534-RA | 613..1558 | 12..959 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:21:45 Download gff for
BO07858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12132758..12132976 | 741..959 | 99 | -> | Minus |
| 3L | 12133029..12133755 | 12..740 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:11:06 Download gff for
BO07858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12125858..12126076 | 741..959 | 99 | -> | Minus |
| arm_3L | 12126129..12126855 | 12..740 | 99 | | Minus |
BO07858.5prime Sequence
918 bp (886 high quality bases) assembled on 2006-01-06
> BO07858.5prime
GAAGTTATCAGTCGACATGAGCTCCTGGAAGGACAGTCTCACGAGCATTC
CGGGCACGGTGGCGCAGTTGATTAACGAGAGCGCCAGCAACCTGTTACAC
GCCTCATCCACGCTGGGATCAACAGTTGGCCTTGGAGGCTCTGGCTCCAC
TGGATCTGGATCCGAGGCCGGAGGCTCCGAGGAAAGTGGTCCACAAGGTG
CGGAGTACAGGGCGTTGCCCATTCCCGCGTCCTTGGTGCGCGAGCAATGG
CGCCTAATCTTCACCAGCGATGCCAATATCCAGGATTTGCAGGCGGCCAT
CGCCCATTGCAGAGATCTCGTCCTGCTGAGCGAGGAACTCAGCGAGGAGC
GTCGCTGGTTGGTGCGGCACCTGGTAGATTTGCGATACTCACTGCAGGAG
CTGGAGGAGGCCCAGGAGCAGCATTCCCTATCGTCGGACATGGTAGTTAT
GAATGCCATACGTGCTGTGGTGGGTCATCATTTTGTGCCCCATCACCCGC
ATCATGGCAAACGGAATCGTCTGCAGGCAGCCGCCAAGAGGAACTACTGT
GACCACTGCACCACCATTATTTGGAGTGTGGTGCAGAACTCGTACGTGTG
CAGCGATTGCGGATTCCTGGTCCATCAGAAGTGCATCGATGGCGTGAAGA
GGGTTTGTGCCCATGTCCTGGTTTCAGAGCGGCAGCATCCCATTTCGGAG
ATATGTCCAGAAATCGGACTCGCCTCCCAGGGATACAAGTGCGCCGAGTG
CGGGACGATGCTAAATATAAAAAATACCTGGATTGAGCCGCGTCTATGCG
ACTATAGTGGATTGTACTACTGCCCTCGCTGCAACTGGAACGACAGTAAC
TTTATACCAGCCCGCATTATCCACAATTGGGACTTTTCGCCACGCAGAGT
GTCGCGCACGGCGCTCCA
BO07858.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11534-PA | 1479 | CG11534-RA | 1..902 | 17..918 | 4510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:02:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11534-RA | 1637 | CG11534-RA | 78..979 | 17..918 | 4510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:02:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12132223..12132976 | 17..770 | 3770 | 100 | Plus |
| 3L | 28110227 | 3L | 12133029..12133176 | 771..918 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:02:56 has no hits.
BO07858.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:09 Download gff for
BO07858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11534-PA | 1..901 | 17..917 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:38 Download gff for
BO07858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11534-PA | 1..901 | 17..917 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:57:24 Download gff for
BO07858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11534-RA | 78..978 | 17..917 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:50:15 Download gff for
BO07858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11534-RA | 78..978 | 17..917 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:50:15 Download gff for
BO07858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12132223..12132976 | 17..770 | 100 | -> | Plus |
| 3L | 12133029..12133175 | 771..917 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:57:24 Download gff for
BO07858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12125323..12126076 | 17..770 | 100 | -> | Plus |
| arm_3L | 12126129..12126275 | 771..917 | 100 | | Plus |
BO07858.complete Sequence
1510 bp (1510 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630966
> BO07858.complete
GAAGTTATCAGTCGACATGAGCTCCTGGAAGGACAGTCTCACGAGCATTC
CGGGCACGGTGGCGCAGTTGATTAACGAGAGCGCCAGCAACCTGTTACAC
GCCTCATCCACGCTGGGATCAACAGTTGGCCTTGGAGGCTCTGGCTCCAC
TGGATCTGGATCCGAGGCCGGAGGCTCCGAGGAAAGTGGTCCACAAGGTG
CGGAGTACAGGGCGTTGCCCATTCCCGCGTCCTTGGTGCGCGAGCAATGG
CGCCTAATCTTCACCAGCGATGCCAATATCCAGGATTTGCAGGCGGCCAT
CGCCCATTGCAGAGATCTCGTCCTGCTGAGCGAGGAACTCAGCGAGGAGC
GTCGCTGGTTGGTGCGGCACCTGGTAGATTTGCGATACTCACTGCAGGAG
CTGGAGGAGGCCCAGGAGCAGCATTCCCTATCGTCGGACATGGTAGTTAT
GAATGCCATACGTGCTGTGGTGGGTCATCATTTTGTGCCCCATCACCCGC
ATCATGGCAAACGGAATCGTCTGCAGGCAGCCGCCAAGAGGAACTACTGT
GACCACTGCACCACCATTATTTGGAGTGTGGTGCAGAACTCGTACGTGTG
CAGCGATTGCGGATTCCTGGTCCATCAGAAGTGCATCGATGGCGTGAAGA
GGGTTTGTGCCCATGTCCTGGTTTCAGAGCGGCAGCATCCCATTTCGGAG
ATATGTCCAGAAATCGGACTCGCCTCCCAGGGATACAAGTGCGCCGAGTG
CGGGACGATGCTAAATATAAAAAATACCTGGATTGAGCCGCGTCTATGCG
ACTATAGTGGATTGTACTACTGCCCTCGCTGCAACTGGAACGACAGTAAC
TTTATACCAGCCCGCATTATCCACAATTGGGACTTTTCGCCACGCAGAGT
GTCGCGCACGGCGCTCCAAGAGATTAGGTTGTTCCTAAATAAACCGCTCA
TTCGCTTGGAGGAGGACAATCCCAAGCTGTTTGTGTTCGTAGAAAAATTG
TGTGCGGTAAAGAAACTTCGCCAAAATCTGGTGCATATGCGCCACTATCT
GGCTGCCTGCAAGATTGCCAGCGAGTTGAAGCTGGTGGATCAGCAACTGG
GTGTCCGGCGACATCTGGCCCAGTCAAATGAGTTCTATTCCCTAAGTGAT
CTCAGCCAGGTGGAATCTGGAGCGCTGAGCGAATTTCTGCAAGGAGTTTT
CAAGGCATTCAATGATCACATACGATCCTGCCCCATGTGCCTTGCCCAAG
CGTACATTTGCGAGATTTGTAGCAACAACGAGGTGATCTTTCCCTTCGAC
GATGGCTGCATCAAGTGTGATCAGTGCAATTCCATCTTCCACCGAGTTTG
CCTCACGCGCAAAAATATGATTTGCCCCAAATGCATTCGCATCCAAGAGC
GGCGTCTTCAATTGGATCGCATGAAGAGCACCGAGGACGATGATGATGAT
GATGATGGAGTGGCCACCGATGATGACGTGACTGCCGCAGAAGCAAGCTT
TCTAGACCAT
BO07858.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:40:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11534-RA | 1479 | CG11534-PA | 1..1476 | 17..1492 | 7380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:40:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11534-RA | 1637 | CG11534-RA | 78..1553 | 17..1492 | 7380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:40:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12132223..12132976 | 17..770 | 3770 | 100 | Plus |
| 3L | 28110227 | 3L | 12133029..12133750 | 771..1492 | 3610 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:40:11 has no hits.
BO07858.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:23 Download gff for
BO07858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11534-RA | 1..1479 | 17..1496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:58 Download gff for
BO07858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11534-RA | 52..1532 | 17..1499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:33:08 Download gff for
BO07858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11534-RA | 78..1553 | 17..1494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:23 Download gff for
BO07858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11534-RA | 52..1532 | 17..1499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:39:09 Download gff for
BO07858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11534-RA | 78..1553 | 17..1494 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:39:09 Download gff for
BO07858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12132223..12132976 | 17..770 | 100 | -> | Plus |
| 3L | 12133029..12133750 | 771..1494 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:33:08 Download gff for
BO07858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12125323..12126076 | 17..770 | 100 | -> | Plus |
| arm_3L | 12126129..12126850 | 771..1494 | 99 | | Plus |
BO07858.pep Sequence
Translation from 16 to 1510
> BO07858.pep
MSSWKDSLTSIPGTVAQLINESASNLLHASSTLGSTVGLGGSGSTGSGSE
AGGSEESGPQGAEYRALPIPASLVREQWRLIFTSDANIQDLQAAIAHCRD
LVLLSEELSEERRWLVRHLVDLRYSLQELEEAQEQHSLSSDMVVMNAIRA
VVGHHFVPHHPHHGKRNRLQAAAKRNYCDHCTTIIWSVVQNSYVCSDCGF
LVHQKCIDGVKRVCAHVLVSERQHPISEICPEIGLASQGYKCAECGTMLN
IKNTWIEPRLCDYSGLYYCPRCNWNDSNFIPARIIHNWDFSPRRVSRTAL
QEIRLFLNKPLIRLEEDNPKLFVFVEKLCAVKKLRQNLVHMRHYLAACKI
ASELKLVDQQLGVRRHLAQSNEFYSLSDLSQVESGALSEFLQGVFKAFND
HIRSCPMCLAQAYICEICSNNEVIFPFDDGCIKCDQCNSIFHRVCLTRKN
MICPKCIRIQERRLQLDRMKSTEDDDDDDDGVATDDDVTAAEASFLDH
BO07858.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11534-PA | 492 | CG11534-PA | 1..492 | 1..492 | 2621 | 100 | Plus |
| CG6613-PA | 720 | CG6613-PA | 460..704 | 221..465 | 382 | 33.7 | Plus |
| CG12772-PB | 827 | CG12772-PB | 596..825 | 235..462 | 305 | 29.1 | Plus |
| CG12772-PA | 827 | CG12772-PA | 596..825 | 235..462 | 305 | 29.1 | Plus |
