Clone Sequence Records
BO07860.3prime Sequence
807 bp (806 high quality bases) assembled on 2006-01-06
> BO07860.3prime
ATGGTCTAGAAAGCTTGCACTCCCTGCGTTCGTCTGCTCCACGGCACGTA
TTTGCTCCTGGAGCTCCTGGATATGCTGCTCGAACTTCTGGATATCGCCG
GTGATCTGCTGCAGACTGGTCAGCACGTTCTTCAGTTTCTCCCCATCGAT
TTGGACCTCAAGTTCGCGGATCTGCTTGGTCACGTTTCCCGTGAGGGAGA
CGCACTCGACCAGCTCATTGCAATTGGCGTGCAGTTGGGCCAGTAGCTTG
TAGGCCCGCTTCGCGTGGAGATCATGCTTGGCGCTCTGGAAGAGCAGGTC
GTCCGTGTAGTTGAACTGGCGCTGCAACTGGGCACCCACGACATTAAGCT
GCTTTTGGAGTTGTCGCGTGTCATCCAGAACTTTGTAGATATCCGCTCGT
TGCTTGCGTATGTTCCCGATGAATTCATGTATCCTGCGGGTGTACTCCTT
GCGAGGTGCCAAGGACTGACTGGCGCTACGCAGGGTGGCATTAAGTTCGT
TGTGCTGTTGGGTCTTGGCCAGAAGCTCCTGCTCCAGCTGCTCGATGCTG
TTGCGAATGCCCTGGACCTCCTGAGCCTCCTTGGCGGTCTTTAGTTTCTC
TAGGCTTTCCAGCAGCGGTTTCCTGTAATCCTGCCACTGCTGGGTAAGCG
TGAGCCTTTTGCTTTGCGTGGATTTTAGCAGGGCCTCCAGTTTGGCCAGG
TTTTCCTCGGAATCGGCGAGAACCAAGGAGGTGCGTTCGTGCAGTTTAAG
CGTGGGCTGAATGCGACTGATCTCCTCTCTCGCTTTAGTTTCCCGCTGTT
TCAGAGC
BO07860.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9951-PA | 1668 | CG9951-RA | 877..1665 | 807..19 | 3945 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:07:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9951-RA | 1826 | CG9951-RA | 959..1747 | 807..19 | 3945 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:07:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16864122..16864910 | 807..19 | 3945 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:07:11 has no hits.
BO07860.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:12 Download gff for
BO07860.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9951-PA | 877..1668 | 18..807 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:43 Download gff for
BO07860.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9951-PA | 877..1668 | 18..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:46:42 Download gff for
BO07860.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9951-RA | 959..1752 | 11..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:05:08 Download gff for
BO07860.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9951-RA | 959..1752 | 11..807 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:05:08 Download gff for
BO07860.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16864122..16864915 | 11..807 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:46:42 Download gff for
BO07860.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16857222..16858015 | 11..807 | 99 | | Minus |
BO07860.5prime Sequence
881 bp (779 high quality bases) assembled on 2006-01-06
> BO07860.5prime
GAAGTTATCAGTCGACATGGACGAAGTGGACAAGATAATCATGCACCAGC
TGCACCAGGTGGACGCGACCATCGAGCCGACGGATGAGCTGTCCGACTTC
ACCCCGGAACAGGTGGTGCGAGCAGTCTCCGGCTGTCTGGCGGAGATTCG
TCCAGACTTGCAGCTTCCACGCACTCTCCCCGGCGGAGCGATGGCCCAGC
GCTTCGGAGTGGCCAGCTCCTTGGCGCAGGGTTGCAAGGATAGCGGTTAC
CGAGGCGATATTGGTTATCAGACCTTTTTGTATCCCAATGCCGTGGAATT
GCGGCGACTGCTAATGTTTCTCATCGAACAACTTCCGCGGGAGCGTCAAG
GCACAGAGGACGGTGCCAGCAAGTCGCAAACCCTGAGCCACAGGCAACTC
CTGGAGCGGAAGATCCGAAAGGAGCTCGCCCAACAACTGAAGACACCCTG
GGTCCCACAGTTTGCCCGGTCCGTGGGCAATCGTAAATTACTCGGTTGCA
GTAGCCTGGGCATTGAATTTCGACCAAACATCAATCTCAACATTCCATCC
GCCAATCCCGAGGAGCGTTCCAAGGAGCAGCAGCAGTATCTCGACCAACA
GGCACCCAATCTCTTCCAGCAAACATCCTCCACCTCGACGGATCTCATTG
CCTCCGTGCTGCACAAGAATGAGCTGGACAGGTGGGGCCAGATATTGCCG
GATTCAACACTTATCTTTGTGAGCAGCGAGGATCCAGCGCCGCCCCTGAT
TCCGACCGTAAAACCGCCCGCCAGTGCGGAGAAGGAGGAGGAGCCTTCAC
CCATCCAAGAACTGAGCGACCAAGTCCAGGAGTTGCGAGTCCAATGCGAA
AACCTGCTAGCGGAACGCAAAGCACATGCTG
BO07860.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9951-PA | 1668 | CG9951-RA | 1..865 | 17..881 | 4325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:59:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9951-RA | 1826 | CG9951-RA | 82..947 | 16..881 | 4330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:59:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16863245..16864110 | 16..881 | 4330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:59:35 has no hits.
BO07860.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:13 Download gff for
BO07860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9951-PA | 1..865 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:44 Download gff for
BO07860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9951-PA | 1..865 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:23:39 Download gff for
BO07860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9951-RA | 75..947 | 10..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:24:30 Download gff for
BO07860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9951-RA | 75..947 | 10..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:24:30 Download gff for
BO07860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16863238..16864110 | 10..881 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:23:39 Download gff for
BO07860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16856338..16857210 | 10..881 | 99 | | Plus |
BO07860.complete Sequence
1699 bp (1699 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630967
> BO07860.complete
GAAGTTATCAGTCGACATGGACGAAGTGGACAAGATAATCATGCACCAGC
TGCACCAGGTGGACGCGACCATCGAGCCGACGGATGAGCTGTCCGACTTC
ACCCCGGAACAGGTGGTGCGAGCAGTCTCCGGCTGTCTGGCGGAGATTCG
TCCAGACTTGCAGCTTCCACGCACTCTCCCCGGCGGAGCGATGGCCCAGC
GCTTCGGAGTGGCCAGCTCCTTGGCGCAGGGTTGCAAGGATAGCGGTTAC
CGAGGCGATATTGGTTATCAGACCTTTTTGTATCCCAATGCCGTGGAATT
GCGGCGACTGCTAATGTTTCTCATCGAACAACTTCCGCGGGAGCGTCAAG
GCACAGAGGACGGTGCCAGCAAGTCGCAAACCCTGAGCCACAGGCAACTC
CTGGAGCGGAAGATCCGAAAGGAGCTCGCCCAACAACTGAAGACACCCTG
GGTCCCACAGTTTGCCCGGTCCGTGGGCAATCGTAAATTACTCGGTTGCA
GTAGCCTGGGCATTGAATTTCGACCAAACATCAATCTCAACATTCCATCC
GCCAATCCCGAGGAGCGTTCCAAGGAGCAGCAGCAGTATCTCGACCAACA
GGCACCCAATCTCTTCCAGCAAACATCCTCCACCTCGACGGATCTCATTG
CCTCCGTGCTGCACAAGAATGAGCTGGACAGGTGGGGCCAGATATTGCCG
GATTCAACACTTATCTTTGTGAGCAGCGAGGATCCAGCGCCGCCCCTGAT
TCCGACCGTAAAACCGCCCGCCAGTGCGGAGAAGGAGGAGGAGCCTTCAC
CCATCCAAGAACTGAGCGACCAAGTCCAGGAGTTGCGAGTCCAATGCGAA
AACCTGCTAGCGGAACGCAAAGCACATGCTGTTGCCATTGCAGCTCTGAA
ACAGCGGGAAACTAAAGCGAGAGAGGAGATCAGTCGCATTCAGCCCACGC
TTAAACTGCACGAACGCACCTCCTTGGTTCTCGCCGATTCCGAGGAAAAC
CTGGCCAAACTGGAGGCCCTGCTAAAATCCACGCAAAGCAAAAGGCTCAC
GCTTACCCAGCAGTGGCAGGATTACAGGAAACCGCTGCTGGAAAGCCTAG
AGAAACTAAAGACCGCCAAGGAGGCTCAGGAGGTCCAGGGCATTCGCAAC
AGCATCGAGCAGCTGGAGCAGGAGCTTCTGGCCAAGACCCAACAGCACAA
CGAACTTAATGCCACCCTGCGTAGCGCCAGTCAGTCCTTGGCACCTCGCA
AGGAGTACACCCGCAGGATACATGAATTCATCGGGAACATACGCAAGCAA
CGAGCGGATATCTACAAAGTTCTGGATGACACGCGACAACTCCAAAAGCA
GCTTAATGTCGTGGGTGCCCAGTTGCAGCGCCAGTTCAACTACACGGACG
ACCTGCTCTTCCAGAGCGCCAAGCATGATCTCCACGCGAAGCGGGCCTAC
AAGCTACTGGCCCAACTGCACGCCAATTGCAATGAGCTGGTCGAGTGCGT
CTCCCTCACGGGAAACGTGACCAAGCAGATCCGCGAACTTGAGGTCCAAA
TCGATGGGGAGAAACTGAAGAACGTGCTGACCAGTCTGCAGCAGATCACC
GGCGATATCCAGAAGTTCGAGCAGCATATCCAGGAGCTCCAGGAGCAAAT
ACGTGCCGTGGAGCAGACGAACGCAGGGAGTGCAAGCTTTCTAGACCAT
BO07860.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:17:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9951-RA | 1668 | CG9951-PA | 1..1665 | 17..1681 | 8325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:17:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9951-RA | 1826 | CG9951-RA | 82..1747 | 16..1681 | 8330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:17:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16863245..16864910 | 16..1681 | 8330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:17:18 has no hits.
BO07860.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:59 Download gff for
BO07860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9951-RA | 1..1668 | 17..1682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:39 Download gff for
BO07860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9951-RA | 75..1752 | 10..1689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:11:02 Download gff for
BO07860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9951-RA | 83..1747 | 17..1683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:59 Download gff for
BO07860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9951-RA | 77..1754 | 10..1689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:31 Download gff for
BO07860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9951-RA | 83..1747 | 17..1683 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:31 Download gff for
BO07860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16863246..16864910 | 17..1683 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:11:02 Download gff for
BO07860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16856346..16858010 | 17..1683 | 99 | | Plus |
BO07860.pep Sequence
Translation from 16 to 1699
> BO07860.pep
MDEVDKIIMHQLHQVDATIEPTDELSDFTPEQVVRAVSGCLAEIRPDLQL
PRTLPGGAMAQRFGVASSLAQGCKDSGYRGDIGYQTFLYPNAVELRRLLM
FLIEQLPRERQGTEDGASKSQTLSHRQLLERKIRKELAQQLKTPWVPQFA
RSVGNRKLLGCSSLGIEFRPNINLNIPSANPEERSKEQQQYLDQQAPNLF
QQTSSTSTDLIASVLHKNELDRWGQILPDSTLIFVSSEDPAPPLIPTVKP
PASAEKEEEPSPIQELSDQVQELRVQCENLLAERKAHAVAIAALKQRETK
AREEISRIQPTLKLHERTSLVLADSEENLAKLEALLKSTQSKRLTLTQQW
QDYRKPLLESLEKLKTAKEAQEVQGIRNSIEQLEQELLAKTQQHNELNAT
LRSASQSLAPRKEYTRRIHEFIGNIRKQRADIYKVLDDTRQLQKQLNVVG
AQLQRQFNYTDDLLFQSAKHDLHAKRAYKLLAQLHANCNELVECVSLTGN
VTKQIRELEVQIDGEKLKNVLTSLQQITGDIQKFEQHIQELQEQIRAVEQ
TNAGSASFLDH
BO07860.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:37:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9951-PA | 555 | CG9951-PA | 1..555 | 1..555 | 2793 | 100 | Plus |
