Clone Sequence Records
BO07861.3prime Sequence
903 bp (793 high quality bases) assembled on 2006-01-06
> BO07861.3prime
ATGGTCTAGAAAGCTTGCCTTTGTGTCTGCCTGCATAATGCGCCTGTACT
GTCGTTGGTTCTCCAGCAGCTGCAGGAACACCTTGTACTTGCGATTGTGG
AACTCAAGCGTTTCCGCGTTCGGCTTCACCAGCTGGCCAGTGCCACCCAT
GGATTTCGAGGCGCTCTCCAAGCTGTCGAAGTGGCCGGAGGCAGCGGCTC
CCAAGGCAGCAGCGCCCACCAGAACCATTTCCTGTTCATCCGGAATCAGT
GCGGGCAGATTGCAAATGTCCGCATGACATTGTACGTACAGAGGATTCTT
GGCCAATCCCCCGCAGAAAAGTAGCGTTTGAAAGGGAGCTCTACCGTACT
GGTAAAGGTTTTCAATAATGTGACGTGTGCCGTAAGCCAGAGCTTGGACG
AACGCCAAGTATTTGATGGCCAGAGATTCAGTTCCTCGCGTCATGTCCAG
TCCAGTAATCACTCCTCGCAGCGTGGGATCTGCGATGGGCGACCGATTGC
CATGCAAGTCCGGCCAGACATGGACATCCTGGGTGAGACAGCCCACCTGG
CTTAATCCTCGAGCTGCTGCCAGTTCCGGCAGCAACTTATTAAGATGCTG
GTAGATAAACTTATCCTCTCCCAATTGGGATTTCAGTTCGGCGTAGGATT
CATGCGACTTGAGGACGTGATCTAGGAGATGTCCTGCGATGCTCTGACCA
CCCTCGTTTAGGAAGTAGCCGGGAATAATGGCATCCTGATAGGGACCCCA
AACACCTTGTGCGAAGCATGCCTTCCGGGTGATGCTCATGTGGCAAGTGG
ATGTACCGGCAATCAGAGCCATTTTACCCTGGACATCGTCGGCACCCTTG
GACTCCTTTGAGCGGCATCCAAACATTCCCAAGGCGCCAGCATGGGCATC
GAT
BO07861.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11594-PB | 1320 | CG11594-RB | 433..1317 | 903..19 | 4400 | 99.8 | Minus |
| CG11594-PA | 1647 | CG11594-RA | 760..1644 | 903..19 | 4400 | 99.8 | Minus |
| CG11594-PC | 1647 | CG11594-RC | 760..1644 | 903..19 | 4400 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:37:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11594-RE | 2123 | CG11594-RE | 1143..2027 | 903..19 | 4410 | 99.9 | Minus |
| CG11594-RD | 1879 | CG11594-RD | 899..1783 | 903..19 | 4410 | 99.9 | Minus |
| CG11594-RC | 1944 | CG11594-RC | 964..1848 | 903..19 | 4410 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:37:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4023690..4024133 | 460..903 | 2205 | 99.8 | Plus |
| 3L | 28110227 | 3L | 4023276..4023494 | 166..384 | 1095 | 100 | Plus |
| 3L | 28110227 | 3L | 4023070..4023218 | 19..167 | 745 | 100 | Plus |
| 3L | 28110227 | 3L | 4023553..4023628 | 385..460 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:37:06 has no hits.
BO07861.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:13 Download gff for
BO07861.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-PB | 433..1320 | 16..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:45 Download gff for
BO07861.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-PC | 760..1647 | 16..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:05:17 Download gff for
BO07861.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-RC | 964..1848 | 19..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:51:37 Download gff for
BO07861.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-RC | 964..1848 | 19..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:51:37 Download gff for
BO07861.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4023070..4023216 | 19..165 | 100 | <- | Plus |
| 3L | 4023276..4023494 | 166..384 | 100 | <- | Plus |
| 3L | 4023553..4023627 | 385..459 | 100 | <- | Plus |
| 3L | 4023690..4024133 | 460..903 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:05:17 Download gff for
BO07861.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4023070..4023216 | 19..165 | 100 | <- | Plus |
| arm_3L | 4023276..4023494 | 166..384 | 100 | <- | Plus |
| arm_3L | 4023553..4023627 | 385..459 | 100 | <- | Plus |
| arm_3L | 4023690..4024133 | 460..903 | 99 | | Plus |
BO07861.5prime Sequence
950 bp (816 high quality bases) assembled on 2006-01-06
> BO07861.5prime
GAAGTTATCAGTCGACATGGACCATCGTGCCGAGCAGGAAACCCAAGAGA
TCAATGCCTTCAAACACTCGCTGCTGAAATATGTGGGTGGTCAGGTTTCG
CTGGAAATGGAGGTTCCCAAATTGCTGTGGCTGAAGAGGAATCTGTCACA
GACTTTTGGAAATATTTGGAGGGTCTTTGACCTGCCCGACTTTCTGACCT
GGCGAGCCACTGGAGTGGACACCCGATCACTTTGCTCGGTGGTGTGCAAG
TGGAACTACGATGCAGCGAATGGCAGTTGGAACAAGGAGTTCCTGAAGCA
GGCGGACTTGGAGGAGTTGACACAGAATAACTTCGAGAAATTGGGCAGTG
ATGTCCAGCCGCCTGGCCGAACGGTGGGCAAAGGACTCACGGCCAAGGCT
GCTGGGGAACTGGGCTTATCCGCCGGCACTGTGGTGAGCACCTCCCTAAT
CGATGCCCATGCTGGCGCCTTGGGAATGTTTGGATGCCGCTCAAAGGAGT
CCAAGGGTGCCGACGATGTCCAGGGTAAAATGGCTCTGATTGCCGGTACA
TCCACCTGCCACATGAGCATCACCCGGAAGGCATGCTTCGCACAAGGTGT
TTGGGGTCCCTATCAGGATGCCATTATTCCCGGCTACTTCCTAAACGAGG
GTGGTCAGAGCATCGCAGGACATCTCCTAGATCACGTCCTCAAGTCGCAT
GAATCCTACGCCGAACTGAAATCCCAATTGGGAGAGGATAAGTTTATCTA
CCAGCATCTTAATAAGTTGCTGCCGGAACTGGCAGCAGCTCGAGGATTAA
GCCAGGTGGGCTGTCTCACCCAGGATGTCCATGTCTGGGCGGACTTGCAT
GGCAATCGGTCGCCCATCGCAGATCCCACGCTGCGAGGAGTGATTACTGG
ACTGGACATGACGCGAGGAACTGAATCTCTGGCCATCAAATACTTGGGCG
BO07861.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11594-PB | 1320 | CG11594-RB | 1..931 | 17..947 | 4605 | 99.7 | Plus |
| CG11594-PA | 1647 | CG11594-RA | 328..1258 | 17..947 | 4605 | 99.7 | Plus |
| CG11594-PC | 1647 | CG11594-RC | 328..1258 | 17..947 | 4605 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:24:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11594-RE | 2123 | CG11594-RE | 711..1641 | 17..947 | 4625 | 99.8 | Plus |
| CG11594-RD | 1879 | CG11594-RD | 467..1397 | 17..947 | 4625 | 99.8 | Plus |
| CG11594-RC | 1944 | CG11594-RC | 532..1462 | 17..947 | 4625 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:24:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4023690..4024565 | 892..17 | 4350 | 99.8 | Minus |
| 3L | 28110227 | 3L | 4023573..4023628 | 947..892 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:24:36 has no hits.
BO07861.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:14 Download gff for
BO07861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-PB | 1..933 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:46 Download gff for
BO07861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-PC | 328..1260 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:08:39 Download gff for
BO07861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-RC | 532..1464 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:57:13 Download gff for
BO07861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-RC | 532..1464 | 17..950 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:57:13 Download gff for
BO07861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4023571..4023627 | 893..950 | 98 | <- | Minus |
| 3L | 4023690..4024565 | 17..892 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:08:39 Download gff for
BO07861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4023571..4023627 | 893..950 | 98 | <- | Minus |
| arm_3L | 4023690..4024565 | 17..892 | 99 | | Minus |
BO07861.complete Sequence
1351 bp (1351 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630968
> BO07861.complete
GAAGTTATCAGTCGACATGGACCATCGTGCCGAGCAGGAAACCCAAGAGA
TCAATGCCTTCAAACACTCGCTGCTGAAATATGTGGGTGGTCAGGTTTCG
CTGGAAATGGAGGTTCCCAAATTGCTGTGGCTGAAGAGGAATCTGTCACA
GACTTTTGGAAATATTTGGAGGGTCTTTGACCTGCCCGACTTTCTGACCT
GGCGAGCCACTGGAGTGGACACCCGATCACTTTGCTCGGTGGTGTGCAAG
TGGAACTACGATGCAGCGAATGGCAGTTGGAACAAGGAGTTCCTGAAGCA
GGCGGACTTGGAGGAGTTGACACAGAATAACTTCGAGAAATTGGGCAGTG
ATGTCCAGCCGCCTGGCCGAACGGTGGGCAAAGGACTCACGGCCAAGGCT
GCTGGGGAACTGGGCTTATCCGCCGGCACTGTGGTGAGCACCTCCCTAAT
CGATGCCCATGCTGGCGCCTTGGGAATGTTTGGATGCCGCTCAAAGGAGT
CCAAGGGTGCCGACGATGTCCAGGGTAAAATGGCTCTGATTGCCGGTACA
TCCACCTGCCACATGAGCATCACCCGGAAGGCATGCTTCGCACAAGGTGT
TTGGGGTCCCTATCAGGATGCCATTATTCCCGGCTACTTCCTAAACGAGG
GTGGTCAGAGCATCGCAGGACATCTCCTAGATCACGTCCTCAAGTCGCAT
GAATCCTACGCCGAACTGAAATCCCAATTGGGAGAGGATAAGTTTATCTA
CCAGCATCTTAATAAGTTGCTGCCGGAACTGGCAGCAGCTCGAGGATTAA
GCCAGGTGGGCTGTCTCACCCAGGATGTCCATGTCTGGCCGGACTTGCAT
GGCAATCGGTCGCCCATCGCAGATCCCACGCTGCGAGGAGTGATTACTGG
ACTGGACATGACGCGAGGAACTGAATCTCTGGCCATCAAATACTTGGCGT
TCGTCCAAGCTCTGGCTTACGGCACACGTCACATTATTGAAAACCTTTAC
CAGTACGGTAGAGCTCCCTTTCAAACGCTACTTTTCTGCGGGGGATTGGC
CAAGAATCCTCTGTACGTACAATGTCATGCGGACATTTGCAATCTGCCCG
CACTGATTCCGGATGAACAGGAAATGGTTCTGGTGGGCGCTGCTGCCTTG
GGAGCCGCTGCCTCCGGCCACTTCGACAGCTTGGAGAGCGCCTCGAAATC
CATGGGTGGCACTGGCCAGCTGGTGAAGCCGAACGCGGAAACGCTTGAGT
TCCACAATCGCAAGTACAAGGTGTTCCTGCAGCTGCTGGAGAACCAACGA
CAGTACAGGCGCATTATGCAGGCAGACACAAAGGCAAGCTTTCTAGACCA
T
BO07861.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:16:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11594-RE | 1647 | CG11594-PE | 328..1644 | 17..1333 | 6570 | 99.9 | Plus |
| CG11594-RD | 1647 | CG11594-PD | 328..1644 | 17..1333 | 6570 | 99.9 | Plus |
| CG11594-RC | 1647 | CG11594-PC | 328..1644 | 17..1333 | 6570 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:16:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11594-RE | 2123 | CG11594-RE | 711..2027 | 17..1333 | 6570 | 99.9 | Plus |
| CG11594-RD | 1879 | CG11594-RD | 467..1783 | 17..1333 | 6570 | 99.9 | Plus |
| CG11594-RC | 1944 | CG11594-RC | 532..1848 | 17..1333 | 6570 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:16:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4023690..4024565 | 892..17 | 4365 | 99.9 | Minus |
| 3L | 28110227 | 3L | 4023276..4023494 | 1186..968 | 1095 | 100 | Minus |
| 3L | 28110227 | 3L | 4023070..4023218 | 1333..1185 | 745 | 100 | Minus |
| 3L | 28110227 | 3L | 4023553..4023628 | 967..892 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:16:13 has no hits.
BO07861.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:12 Download gff for
BO07861.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-RC | 328..1647 | 17..1336 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:34 Download gff for
BO07861.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-RC | 530..1846 | 17..1333 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:31 Download gff for
BO07861.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-RC | 532..1848 | 17..1335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:12 Download gff for
BO07861.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-RC | 530..1846 | 17..1333 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:06 Download gff for
BO07861.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-RC | 532..1848 | 17..1335 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:06 Download gff for
BO07861.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4023067..4023216 | 1187..1335 | 98 | <- | Minus |
| 3L | 4023276..4023494 | 968..1186 | 100 | <- | Minus |
| 3L | 4023553..4023627 | 893..967 | 100 | <- | Minus |
| 3L | 4023690..4024565 | 17..892 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:31 Download gff for
BO07861.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4023067..4023216 | 1187..1335 | 98 | <- | Minus |
| arm_3L | 4023276..4023494 | 968..1186 | 100 | <- | Minus |
| arm_3L | 4023553..4023627 | 893..967 | 100 | <- | Minus |
| arm_3L | 4023690..4024565 | 17..892 | 99 | | Minus |
BO07861.pep Sequence
Translation from 16 to 1351
> BO07861.pep
MDHRAEQETQEINAFKHSLLKYVGGQVSLEMEVPKLLWLKRNLSQTFGNI
WRVFDLPDFLTWRATGVDTRSLCSVVCKWNYDAANGSWNKEFLKQADLEE
LTQNNFEKLGSDVQPPGRTVGKGLTAKAAGELGLSAGTVVSTSLIDAHAG
ALGMFGCRSKESKGADDVQGKMALIAGTSTCHMSITRKACFAQGVWGPYQ
DAIIPGYFLNEGGQSIAGHLLDHVLKSHESYAELKSQLGEDKFIYQHLNK
LLPELAAARGLSQVGCLTQDVHVWPDLHGNRSPIADPTLRGVITGLDMTR
GTESLAIKYLAFVQALAYGTRHIIENLYQYGRAPFQTLLFCGGLAKNPLY
VQCHADICNLPALIPDEQEMVLVGAAALGAAASGHFDSLESASKSMGGTG
QLVKPNAETLEFHNRKYKVFLQLLENQRQYRRIMQADTKASFLDH
BO07861.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11594-PE | 548 | CG11594-PE | 110..548 | 1..439 | 2304 | 100 | Plus |
| CG11594-PD | 548 | CG11594-PD | 110..548 | 1..439 | 2304 | 100 | Plus |
| CG11594-PC | 548 | CG11594-PC | 110..548 | 1..439 | 2304 | 100 | Plus |
| CG11594-PA | 548 | CG11594-PA | 110..548 | 1..439 | 2304 | 100 | Plus |
