Clone Sequence Records
BO07864.complete Sequence
2158 bp assembled on 2010-04-13
GenBank Submission: KX797684
> BO07864.complete
GAAGTTATCAGTCGACATGGACAGGGATTCCTGCCAAAATTTCTCATTAG
ACTCCACGAGCAGTTCCCATTTTGCTCCTCCGCCAGTTTGCGCGCCCAGA
AGGAAGAAGCCGGAGAAGCCCGCAGCTGAGGAGGCATCTCCCGAATGCTC
CAACGTCACATCGTCATCCTCGTCCTCGACAACCACCATATCCATAGGCG
CCTTCGATTCGCAATGCAACCTCCACAACGCCCGGAATCCCGAGGCCCCG
AACATTGGCTATGAGTTGAACGTGGCCAAGTCCATATTGCAGAAGTATAG
CACCCTCAGTGGGGACAACTTGTTCGATCATCTTAGTGACATCATAAAGA
GGGTGATTGACGAACGTCCTCCGAATGTGATAGACTTCTTCGAGGAATTT
AGCCGAAATGTTCGCGAACAGAAGTTCCACTTGCCAGAACGCTTTCCGCC
CAGTGGCGTGTTCGATGAGGTGCGATCTTTCCGGGTGGCCAAGAAAATTC
TCCAATCCATGAAGCTGCCCTATGTCGTTGAGGGTGAGGATCTGATGGGC
GAAGACCTGTCCGTCGAGGATTTGAGAACGAACGAGGATATGCGCATTGT
CATCGACGATTCCATGCGATACTTCGTCACATTCAACGAGCGAGTCCAGC
AGCTGCAGTTCTATTGGACACAGTGCGGATTTAGCATCAGCAACGACGAC
ATCTTCCAGCTGGCCAGCGCCATGAACCGGCTGCAGACGCATCCCTCGAT
CATGCAATGCAGATTCTGGGGCTGCATCAACGGACTGAAGGCCTCTTACT
ACATAGTGGAAGCTTCGCTCACCCGCGAGGAAATCGCCTCGCGCTTGGTC
ATGATGGAGGAAGAGATGCGGCAGAAGCAGATTCCGTTCCCGATGCGCAA
GGACAGGGAGGACAAGCCACCGCCGGCGCACATTGGGCCGGAGCTCACAC
CGGGCATCTATGGCTGGGAGGAATTTCCGCCTGAGGAGCTCGAGAAGATG
AAGCCCAAGGCTGCGCCCGTTCCCCTGGTGGAGGAGATGGAGCTCTACGA
CATTCCACCGGAGTTCATTGGCAAGGGCTGCAATAGGTACTCCTATTTCG
TTGTGAACTCGCTATTTGACGACTGGATCGAACTACCTATAGTGACCCCT
CGACAGATTGTCGTTTCGCGGCAGATCAAGAAGTTCCTAACAGGCGATCT
GGAGGCGGATGTCATATCCTACCCCTGCTTCCCTGGAAAGGAGAAACATT
ACCTACGGACTCTGATAGGTCGCATCACAGCGGGTACCTACATCGCTCCT
GTGGGCTACTACAGGCGCATGACCAAGAAGGAGCAGCGGATGTTCGATGG
CGAGGAAGAAGAAGAGGGCGAGGAGGAGGAGGAGGAAGAAGAGGAGGAGG
AGTTCAACGAAGGCGAGGAGGAGCAAATAGAAGATAACGACGTAATGCTT
TTGAAAAACGAGAAGTACGAGGCGGAACCACTGGGTTCTCTGGCCACCCC
GGTTGCTTGGGTTCATGTCAGGTCCAATATTCTGAACCAACAAGGCCGCG
TTGTCTGGTACGACGAGGAGAAGGCCCGCAAGGAGCGCGAAAAGGCACTG
GCCCTGTACCTGAAGATGCAGATGCTGGGCGAGATGGAAGAGGAGGTGGA
GGAGGAGGAGGATGAGGAAGAAGGCGAGGAGGAGGGCGAAGAAGAGGGCA
TGATCGAGGGCTTCAATCAGCCCGAACTGGGTCCCAGTATCCTCTCCTCC
TGTGCCAATGACATGAACCCCGAGGTGCCAGTTTCCTGGCTCGCCCGCAT
GACCAGCAAGTACACGAATCAGAAGGAGCGAATGCTCGTGATGCAGTCGA
ACGTCTGGCCAGGCGCCTACACGTTCATCTTTGAGAAGACCTGCGAGTCG
ATATACTTGGGCTGGGGCCACAAGTACTACGCCCGCAATATTCCCTTCAA
GCACTTGCCGATGGTGCAGGAGGAGTTCCCCCACAACCCAGAGGACTTCG
TCGAGGCCAACGATCCGACTGTCGAGGAGGAGGAAGCTTACAAGGCTTGG
CTCCTCCGGAAGCAGCAGAAGGCCGAGTATGTGGCCGAAGACATCGAAGA
CTACGATGATGACGAGTTCGCCGATCAGTATGACGACGACGCAAGCTTTC
TAGACCAT
BO07864.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:53:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3121-RA | 2127 | CG3121-PA | 1..2124 | 17..2140 | 10620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3121-RA | 2284 | CG3121-RA | 94..2217 | 17..2140 | 10620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24018149..24019069 | 513..1433 | 4605 | 100 | Plus |
2R | 25286936 | 2R | 24019121..24019829 | 1432..2140 | 3545 | 100 | Plus |
2R | 25286936 | 2R | 24017514..24017820 | 17..323 | 1535 | 100 | Plus |
2R | 25286936 | 2R | 24017901..24018093 | 322..514 | 965 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:53:32 has no hits.
BO07864.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:20 Download gff for
BO07864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3121-RA | 94..2217 | 17..2142 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:59 Download gff for
BO07864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3121-RA | 94..2217 | 17..2142 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:47 Download gff for
BO07864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3121-RA | 94..2217 | 17..2142 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:47 Download gff for
BO07864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24017514..24017818 | 17..321 | 100 | -> | Plus |
2R | 24017901..24018093 | 322..514 | 100 | -> | Plus |
2R | 24018151..24019069 | 515..1433 | 100 | -> | Plus |
2R | 24019123..24019829 | 1434..2142 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:59 Download gff for
BO07864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19905037..19905341 | 17..321 | 100 | -> | Plus |
arm_2R | 19905424..19905616 | 322..514 | 100 | -> | Plus |
arm_2R | 19905674..19906592 | 515..1433 | 100 | -> | Plus |
arm_2R | 19906646..19907352 | 1434..2142 | 99 | | Plus |
BO07864.3prime Sequence
950 bp (855 high quality bases) assembled on 2006-01-06
> BO07864.3prime
ATGGTCTAGAAAGCTTGCGTCGTCGTCATACTGATCGGCGAACTCGTCAT
CATCGTAGTCTTCGATGTCTTCGGCCACATACTCGGCCTTCTGCTGCTTC
CGGAGGAGCCAAGCCTTGTAAGCTTCCTCCTCCTCGACAGTCGGATCGTT
GGCCTCGACGAAGTCCTCTGGGTTGTGGGGGAACTCCTCCTGCACCATCG
GCAAGTGCTTGAAGGGAATATTGCGGGCGTAGTACTTGTGGCCCCAGCCC
AAGTATATCGACTCGCAGGTCTTCTCAAAGATGAACGTGTAGGCGCCTGG
CCAGACGTTCGACTGCATCACGAGCATTCGCTCCTTCTGATTCGTGTACT
TGCTGGTCATGCGGGCGAGCCAGGAAACTGGCACCTCGGGGTTCATGTCA
TTGGCACAGGAGGAGAGGATACTGGGACCCAGTTCGGGCTGATTGAAGCC
CTCGATCATGCCCTCTTCTTCGCCCTCCTCCTCGCCTTCTTCCTCATCCT
CCTCCTCCTCCACCTCCTCTTCCATCTCGCCCAGCATCTGCATCTTCAGG
TACAGGGCCAGTGCCTTTTCGCGCTCCTTGCGGGCCTTCTCCTCGTCGTA
CCAGACAACGCGGCCTTGTTGGTTCAGAATATTGGACCTGACATGAACCC
AAGCAACCGGGGTGGCCAGAGAACCCAGTGGTTCCGCCTCGTACTTCTCG
TTTTTCAAAAGCATTACGTCGTTATCTTCTATTTGCTCCTCCTCGCCTTC
GTTGAACTCCTCCTCCTCTTCTTCCTCCTCCTCCTCCTCGCCCTCTTCTT
CTTCCTCGCCATCGAACATCCGCTGCTCCTTCTTGGTCATGCGCCTGTAG
TAGCCCACAGGAGCGATGTANGTACCCGCTGTGATGCGACCTATCAGAGT
CCGTAGGTAATGTTTCTCCTTTCCAGGGAAGCAGGGGTAGGATATGACAT
BO07864.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3121-PA | 2127 | CG3121-RA | 1193..2124 | 950..19 | 4641 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:02:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3121-RA | 2284 | CG3121-RA | 1286..2217 | 950..19 | 4649 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:02:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24019121..24019829 | 727..19 | 3545 | 100 | Minus |
2R | 25286936 | 2R | 24018845..24019069 | 950..726 | 1114 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:02:10 has no hits.
BO07864.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:19 Download gff for
BO07864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3121-PA | 1193..2127 | 16..950 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:53 Download gff for
BO07864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3121-PA | 1193..2127 | 16..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:30:16 Download gff for
BO07864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3121-RA | 1286..2223 | 11..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:39:44 Download gff for
BO07864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3121-RA | 1286..2223 | 11..950 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:39:44 Download gff for
BO07864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24018845..24019069 | 726..950 | 99 | -> | Minus |
2R | 24019123..24019835 | 11..725 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:30:16 Download gff for
BO07864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19906368..19906592 | 726..950 | 99 | -> | Minus |
arm_2R | 19906646..19907358 | 11..725 | 99 | | Minus |
BO07864.5prime Sequence
872 bp (765 high quality bases) assembled on 2006-01-06
> BO07864.5prime
GAAGTTATCAGTCGACATGGACAGGGATTCCTGCCAAAATTTCTCATTAG
ACTCCACGAGCAGTTCCCATTTTGCTCCTCCGCCAGTTTGCGCGCCCAGA
AGGAAGAAGCCGGAGAAGCCCGCAGCTGAGGAGGCATCTCCCGAATGCTC
CAACGTCACATCGTCATCCTCGTCCTCGACAACCACCATATCCATAGGCG
CCTTCGATTCGCAATGCAACCTCCACAACGCCCGGAATCCCGAGGCCCCG
AACATTGGCTATGAGTTGAACGTGGCCAAGTCCATATTGCAGAAGTATAG
CACCCTCAGTGGGGACAACTTGTTCGATCATCTTAGTGACATCATAAAGA
GGGTGATTGACGAACGTCCTCCGAATGTGATAGACTTCTTCGAGGAATTT
AGCCGAAATGTTCGCGAACAGAAGTTCCACTTGCCAGAACGCTTTCCGCC
CAGTGGCGTGTTCGATGAGGTGCGATCTTTCCGGGTGGCCAAGAAAATTC
TCCAATCCATGAAGCTGCCCTATGTCGTTGAGGGTGAGGATCTGATGGGC
GAAGACCTGTCCGTCGAGGATTTGAGAACGAACGAGGATATGCGCATTGT
CATCGACGATTCCATGCGATACTTCGTCACATTCAACGAGCGAGTCCAGC
AGCTGCAGTTCTATTGGACACAGTGCGGATTTAGCATCAGCAACGACGAC
ATCTTCCAGCTGGCCAGCGCCATGAACCGGCTGCAGACGCATCCCTCGAT
CATGCAATGCAGATTCTGGGGCTGCATCAACGGACTGAAGGCCTCTTACT
ACATAGTGGAAGCTTCGCTCACCCGCGAGGAAATCGCCTCGCGCTTGGTC
ATGATGGAGGAAGAGATGCGGC
BO07864.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3121-PA | 2127 | CG3121-RA | 1..856 | 17..872 | 4280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:07:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3121-RA | 2284 | CG3121-RA | 94..949 | 17..872 | 4280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:07:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24018149..24018508 | 513..872 | 1800 | 100 | Plus |
2R | 25286936 | 2R | 24017514..24017820 | 17..323 | 1535 | 100 | Plus |
2R | 25286936 | 2R | 24017901..24018093 | 322..514 | 965 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:07:14 has no hits.
BO07864.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:20 Download gff for
BO07864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3121-PA | 1..856 | 17..872 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:54 Download gff for
BO07864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3121-PA | 1..856 | 17..872 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:46:44 Download gff for
BO07864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3121-RA | 87..949 | 9..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:05:12 Download gff for
BO07864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3121-RA | 87..949 | 9..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:05:12 Download gff for
BO07864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24017507..24017818 | 9..321 | 99 | -> | Plus |
2R | 24017901..24018093 | 322..514 | 100 | -> | Plus |
2R | 24018151..24018508 | 515..872 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:46:44 Download gff for
BO07864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19905030..19905341 | 9..321 | 99 | -> | Plus |
arm_2R | 19905424..19905616 | 322..514 | 100 | -> | Plus |
arm_2R | 19905674..19906031 | 515..872 | 100 | | Plus |
BO07864.pep Sequence
Translation from 16 to 2158
> BO07864.pep
MDRDSCQNFSLDSTSSSHFAPPPVCAPRRKKPEKPAAEEASPECSNVTSS
SSSSTTTISIGAFDSQCNLHNARNPEAPNIGYELNVAKSILQKYSTLSGD
NLFDHLSDIIKRVIDERPPNVIDFFEEFSRNVREQKFHLPERFPPSGVFD
EVRSFRVAKKILQSMKLPYVVEGEDLMGEDLSVEDLRTNEDMRIVIDDSM
RYFVTFNERVQQLQFYWTQCGFSISNDDIFQLASAMNRLQTHPSIMQCRF
WGCINGLKASYYIVEASLTREEIASRLVMMEEEMRQKQIPFPMRKDREDK
PPPAHIGPELTPGIYGWEEFPPEELEKMKPKAAPVPLVEEMELYDIPPEF
IGKGCNRYSYFVVNSLFDDWIELPIVTPRQIVVSRQIKKFLTGDLEADVI
SYPCFPGKEKHYLRTLIGRITAGTYIAPVGYYRRMTKKEQRMFDGEEEEE
GEEEEEEEEEEEFNEGEEEQIEDNDVMLLKNEKYEAEPLGSLATPVAWVH
VRSNILNQQGRVVWYDEEKARKEREKALALYLKMQMLGEMEEEVEEEEDE
EEGEEEGEEEGMIEGFNQPELGPSILSSCANDMNPEVPVSWLARMTSKYT
NQKERMLVMQSNVWPGAYTFIFEKTCESIYLGWGHKYYARNIPFKHLPMV
QEEFPHNPEDFVEANDPTVEEEEAYKAWLLRKQQKAEYVAEDIEDYDDDE
FADQYDDDASFLDH
BO07864.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3121-PA | 708 | CG3121-PA | 1..708 | 1..708 | 3757 | 100 | Plus |