Clone Sequence Records
BO07865.3prime Sequence
959 bp (844 high quality bases) assembled on 2006-01-06
> BO07865.3prime
ATGGTCTAGAAAGCTTGCGAGATGAGGAGCCGGTGGTGGCGGTTCGGGGC
ACTCCTCCATTTCCGTTTCCGATTCGCAGGGACACGCCTCCATCTCATCG
ATGGCACAGCCCTCCTCCTCACAAACGCCCGCATCCGGTCCGGATGGTTC
CGATTCAGGTTCCTTGTAGCCGGCATAGATCTCGGCACGCTGCTTGATAA
TCTCCTGAATGATGGCGGTGAGAATCTCGCGCGAGTCCACTATATGGCCC
ACTTCCTCGGCCACCTCGGCGGACAACCACGGGCAGACGCTCTTCATAAG
CTGCTCCTTCTTAACGGCATCGCTGGCCGGCTCAATGTTCTCCAGCACCT
CCGGCACCAGACTGGCAATGTGTCCCTGGAGCAACTTGGCCGCCGTCACG
CTCTTCTGCATCTCAGCGTCCAGCTCCTTGGCAATCGCATCTTGTCGCAG
GCGACGCTCCTTCTCCGCCTGCAAGCGCAGCTCCTCAGCCTCCAAACGGC
GCAGCTCGGCCAGTTCCGCCTCCCTCTGGGCCAGGAATTCTTCCTGTTTG
CGTCGCAGACTGGACAGTTCCATCTCGTGAGCCACCTCCAGCATGCTTTG
TTCAATGCAGGCGTCCACCAGGACATCGATGATTGGCTGCGCCTCGGCAT
CGAAGTGGAAGAGTTCGCCCTCACCGATCTCGGTGGCCACATCCACGCCC
ACCTTGGCCGGTATGAACGGAGGCGTCGGCGGCTTCTCGAGGAACAGGTC
CGTCTGCGTGTCGATGGTGAACTCCGGCGGACGCTGCACCAACTTCTCCA
GATACTTCTCCGTCTGTATGGTCTCGTGCTTCCGCCCCTTGACCGGCGGC
GGTGTGCCCAGGACATTTCTCTGATTGCGGCACTGCATCGTCCGTTTGCG
CAACATATTGCGACGCCTCAATTCGGCGGGCTTGTCGAAGGGATCCACAT
CCGTCACCA
BO07865.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32392-PA | 1236 | CG32392-RA | 293..1233 | 959..19 | 4680 | 99.8 | Minus |
| CG32392-PB | 1980 | CG32392-RB | 1037..1977 | 959..19 | 4680 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:03:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32392-RB | 2507 | CG32392-RB | 1261..2201 | 959..19 | 4690 | 99.9 | Minus |
| CG32392-RA | 1657 | CG32392-RA | 411..1351 | 959..19 | 4690 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:03:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6756935..6757454 | 19..538 | 2600 | 100 | Plus |
| 3L | 28110227 | 3L | 6757519..6757935 | 539..955 | 2070 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:03:20 has no hits.
BO07865.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:21 Download gff for
BO07865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32392-PA | 294..1236 | 15..958 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:56 Download gff for
BO07865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32392-PB | 1038..1980 | 15..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:57:26 Download gff for
BO07865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32392-RA | 412..1355 | 14..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:51:28 Download gff for
BO07865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32392-RA | 412..1355 | 14..958 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:51:28 Download gff for
BO07865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6756931..6757454 | 14..538 | 99 | <- | Plus |
| 3L | 6757519..6757935 | 539..958 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:57:26 Download gff for
BO07865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6750031..6750554 | 14..538 | 99 | <- | Plus |
| arm_3L | 6750619..6751035 | 539..958 | 99 | | Plus |
BO07865.5prime Sequence
913 bp (755 high quality bases) assembled on 2006-01-06
> BO07865.5prime
GAAGTTATCAGTCGACATGCCAGAGACGGAGCAGCAGCAGCACCCAGCAC
ACTCACATCCTGAACTTAAGCCAGATCCACAGCCAGTGCCAGAACTGGAG
CACCTCACCGACAATAGACCGAATCGCGTGCAGAACTTCTCCTTCGCCAG
CAGCTATCCCTACGCACCAGGACGCGTCTCGTCCAGCTCCAATTCGAACA
CCAACTACAGCTCCACCAACTACAACGCCGGCGGCTTCAACGTCCAGCGC
TATCAGAGTCCCTACAATTTCCAGCACGTGGTGACCAACGCATTCTCGGT
GCTGCGCCATCAGCCCTCCGAGGAGCCCGAATTCGATTCCTATCCAACGC
GACCCCAACAGGCCATCGTGCGTCCGATTAGACGTGAGGCGGGCATAGCT
GATAACCGTGATAATCATGTAGGGAATCCTCCACAGCGATCGCACTTCTC
GCGCAGCAACCAGGAGGTGCGCAGCTTCGCCGATGAGCTGAGCCAGAAGC
TGCGCTTCCTGGCGCCGGAGGAGCAGAACTACGGCGGTCGCCAGAGCGCC
AATTCCGGTGCCTGGATGGATCCAGCGATGTCGCAGCGACCACGATTCGA
GACCACAGTGCCGCAGGGCATCTTCCTGCCGCCTCCGCATGAGGTCCAAA
TGATACCGGCCACCATGCTGAGGAGGCATGTCTACGCCTACTCCTCATAT
CCCATGATCCTCCAAGGGTATCTCACCAAGGAGACCGGCAGTGAGAGCAA
GGAGCAGAAGGTGACCGCCACCCGGCTGAACGGTTTGCGTGCCACGGCGG
CAGTGGCGGCGGCCACAGCTGCGGCCTCCAAATCCTCCCGTAACGATACG
CAATCCCTCGCCGGTGGACTCCACATCACCAAGGCTCAGTTCCAACAACA
ACTGCAACAGCGT
BO07865.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32392-PB | 1980 | CG32392-RB | 1..897 | 17..913 | 4485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:47:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32392-RB | 2507 | CG32392-RB | 224..1121 | 16..913 | 4490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:47:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6759994..6760891 | 913..16 | 4490 | 100 | Minus |
Blast to na_te.dros performed 2015-02-09 19:47:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2632..2838 | 30..241 | 120 | 54.9 | Plus |
BO07865.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:22 Download gff for
BO07865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32392-PB | 1..897 | 17..913 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:57 Download gff for
BO07865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32392-PB | 1..897 | 17..913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:11:09 Download gff for
BO07865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32392-RB | 220..1121 | 10..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:21:48 Download gff for
BO07865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32392-RB | 220..1121 | 10..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:21:48 Download gff for
BO07865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6759994..6760895 | 10..913 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:11:09 Download gff for
BO07865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6753094..6753995 | 10..913 | 99 | | Minus |
BO07865.complete Sequence
2011 bp assembled on 2007-11-02
GenBank Submission: FJ630969
> BO07865.complete
GAAGTTATCAGTCGACATGCCAGAGACGGAGCAGCAGCAGCACCCAGCAC
ACTCACATCCTGAACTTAAGCCAGATCCACAGCCAGTGCCAGAACTGGAG
CACCTCACCGACAATAGACCGAATCGCGTGCAGAACTTCTCCTTCGCCAG
CAGCTATCCCTACGCACCAGGACGCGTCTCGTCCAGCTCCAATTCGAACA
CCAACTACAGCTCCACCAACTACAACGCCGGCGGCTTCAACGTCCAGCGC
TATCAGAGTCCCTACAATTTCCAGCACGTGGTGACCAACGCATTCTCGGT
GCTGCGCCATCAGCCCTCCGAGGAGCCCGAATTCGATTCCTATCCAACGC
GACCCCAACAGGCCATCGTGCGTCCGATTAGACGTGAGGCGGGCATAGCT
GATAACCGTGATAATCATGTAGGGAATCCTCCACAGCGATCGCACTTCTC
GCGCAGCAACCAGGAGGTGCGCAGCTTCGCCGATGAGCTGAGCCAGAAGC
TGCGCTTCCTGGCGCCGGAGGAGCAGAACTACGGCGGTCGCCAGAGCGCC
AATTCCGGTGCCTGGATGGATCCAGCGATGTCGCAGCGACCACGATTCGA
GACCACAGTGCCGCAGGGCATCTTCCTGCCGCCTCCGCATGAGGTCCAAA
TGATACCGGCCACCATGCTGAGGAGGCATGTCTACGCCTACTCCTCATAT
CCCATGATCCTCCAAGGGTATCTCACCAAGGAGACCGGCAGTGAGAGCAA
GGAGCAGAAGGTGACCGCCACCCGGCTGAACGGTTTGCGTGCCACGGCGG
CAGTGGCGGCGGCCACAGCTGCGGCCTCCAAATCCTCCCGTAACGATACG
CAATCCCTCGCCGGTGGACTCCACATCACCAAGGCTCAGTTCCAACAACA
ACTGCAACAGCGTCGCTCCACCAGCAACAACAACAACAACAGCAGCAGCA
ACATCAGCGACAAGAGACCCGTCGTCCCGCCGCCGGAACCCTACAAGAAC
GTCATGTACGACCGTCGCGTCATAAAGGGCAGCAACTTCGGCAACGCCTC
TCTGGTGACGGATGTGGATCCCTTCGACAAGGCCGCCGAATTGAGGCGTC
GCAATATGTTGCGCAAACGGACGATGCAGTGCCGCAATCAGAGAAATGTC
CTGGGCACACCGCCGCCGGTCAAGGGGCGGAAGCACGAGACCATACAGAC
GGAGAAGTATCTGGAGAAGTTGGTGCAGCGTCCGCCGGAGTTCACCATCG
ACACGCAGACGGACCTGTTCCTCGAGAAGCCGCCGACGCCTCCGTTCATA
CCGGCCAAGGTGGGCGTGGATGTGGCCACCGAGATCGGTGAGGGCGAACT
CTTCCACTTCGATGCCGAGGCGCAGCCAATCATCGATGTCCTGGTGGACG
CCTGCATTGAACAAAGCATGCTGGAGGTGGCTCACGAGATGGAACTGTCC
AGTCTGCGACGCAAACAGGAAGAATTCCTGGCCCAGAGGGAGGCGGAACT
GGCCGAGCTGCGCCGTTTGGAGGCTGAGGAGCTGCGCTTGCAGGCGGAGA
AGGAGCGTCGCCTGCGACAAGATGCGATTGCCAAGGAGCTGGACGCTGAG
ATGCAGAAGAGCGTGACGGCGGCCAAGTTGCTCCAGGGACACATTGCCAG
TCTGGTGCCGGAGGTGCTGGAGAACATTGAGCCGGCCAGCGATGCCGTTA
AGAAGGAGCAGCTTATGAAGAGCGTCTGCCCGTGGTTGTCCGCCGAGGTG
GCCGAGGAAGTGGGCCATATAGTGGACTCGCGCGAGATTCTCACCGCCAT
CATTCAGGAGATTATCAAGCAGCGTGCCGAGATCTATGCCGGCTACAAGG
AACCTGAATCGGAACCATCCGGACCGGATGCGGGCGTTTGTGAGGAGGAG
GGCTGTGCCATCGATGAGATGGAGGCGTGTCCCTGCGAATCGGAAACGGA
AATGGAGGAGTGCCCCGAACCGCCACCACCGGCTCCTCATCTCGCAAGCT
TTCTAGACCAT
BO07865.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:38:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32392-RB | 1980 | CG32392-PB | 1..1977 | 17..1993 | 9885 | 100 | Plus |
| CG32392-RA | 1236 | CG32392-PA | 207..1233 | 967..1993 | 5135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:38:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32392-RB | 2507 | CG32392-RB | 224..2201 | 16..1993 | 9890 | 100 | Plus |
| CG32392-RA | 1657 | CG32392-RA | 325..1351 | 967..1993 | 5135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:38:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6759941..6760891 | 966..16 | 4755 | 100 | Minus |
| 3L | 28110227 | 3L | 6756935..6757454 | 1993..1474 | 2600 | 100 | Minus |
| 3L | 28110227 | 3L | 6757519..6757935 | 1473..1057 | 2085 | 100 | Minus |
| 3L | 28110227 | 3L | 6758020..6758112 | 1057..965 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:38:06 has no hits.
BO07865.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:25 Download gff for
BO07865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32392-RB | 1..1980 | 17..1997 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:41 Download gff for
BO07865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32392-RB | 208..2193 | 10..1998 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:30 Download gff for
BO07865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32392-RB | 225..2201 | 17..1995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:55 Download gff for
BO07865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32392-RB | 213..2189 | 17..1995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:22 Download gff for
BO07865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32392-RB | 225..2201 | 17..1995 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:22 Download gff for
BO07865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6756933..6757454 | 1474..1995 | 99 | <- | Minus |
| 3L | 6757519..6757934 | 1058..1473 | 100 | <- | Minus |
| 3L | 6758020..6758110 | 967..1057 | 100 | <- | Minus |
| 3L | 6759941..6760890 | 17..966 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:30 Download gff for
BO07865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6750033..6750554 | 1474..1995 | 99 | <- | Minus |
| arm_3L | 6750619..6751034 | 1058..1473 | 100 | <- | Minus |
| arm_3L | 6751120..6751210 | 967..1057 | 100 | <- | Minus |
| arm_3L | 6753041..6753990 | 17..966 | 100 | | Minus |
BO07865.pep Sequence
Translation from 16 to 2011
> BO07865.pep
MPETEQQQHPAHSHPELKPDPQPVPELEHLTDNRPNRVQNFSFASSYPYA
PGRVSSSSNSNTNYSSTNYNAGGFNVQRYQSPYNFQHVVTNAFSVLRHQP
SEEPEFDSYPTRPQQAIVRPIRREAGIADNRDNHVGNPPQRSHFSRSNQE
VRSFADELSQKLRFLAPEEQNYGGRQSANSGAWMDPAMSQRPRFETTVPQ
GIFLPPPHEVQMIPATMLRRHVYAYSSYPMILQGYLTKETGSESKEQKVT
ATRLNGLRATAAVAAATAAASKSSRNDTQSLAGGLHITKAQFQQQLQQRR
STSNNNNNSSSNISDKRPVVPPPEPYKNVMYDRRVIKGSNFGNASLVTDV
DPFDKAAELRRRNMLRKRTMQCRNQRNVLGTPPPVKGRKHETIQTEKYLE
KLVQRPPEFTIDTQTDLFLEKPPTPPFIPAKVGVDVATEIGEGELFHFDA
EAQPIIDVLVDACIEQSMLEVAHEMELSSLRRKQEEFLAQREAELAELRR
LEAEELRLQAEKERRLRQDAIAKELDAEMQKSVTAAKLLQGHIASLVPEV
LENIEPASDAVKKEQLMKSVCPWLSAEVAEEVGHIVDSREILTAIIQEII
KQRAEIYAGYKEPESEPSGPDAGVCEEEGCAIDEMEACPCESETEMEECP
EPPPPAPHLASFLDH
BO07865.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:44:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32392-PB | 659 | CG32392-PB | 1..659 | 1..659 | 3422 | 100 | Plus |
| CG32392-PA | 411 | CG32392-PA | 69..411 | 317..659 | 1765 | 99.7 | Plus |
