Clone Sequence Records
BO07866.3prime Sequence
903 bp (847 high quality bases) assembled on 2006-01-06
> BO07866.3prime
ATGGTCTAGAAAGCTTGCAACGCAGACCTCGTCGAAGTCCAGGCGTATCT
TCTCGTCAGCGGAAGCCAGCTTATGTATAGTCTTTTTGATGCGCAGCGCT
GGCAAGCGCACGTCGGGGTTTTGGTGCCAGCACTCCTTCATGAGCTTGGA
CATGCCAGTCATTAACGAATCCGAGCTCCAGCGATTGGGAATGGAGGGCC
TGTAGTTGTCGATGCAGACCACCTTGCGCATATCCTCGAAGCTGGGATCC
ATTGGCACCACATCGTAGAAGGGCACCTTGTACTCCTCTGCTATGCCGCA
AGAAATGGTGCGGCGACAAACCTCCCAGAGGACAAGTCCAAATGCGTAAA
TATCTGTCCGGCGTAGTGCTTCGAAGCATTCTAAATCAATGCTTTCATCA
AGAACCTCTGGGGCCATGTAGCGCTTGGTGCCCACTTTGGGGTTGTTGCC
CAGGTCCAGTTGTCCTGTGACGTGCGAATGGGTAACGGCCAGTCCAAAAT
CGGCTATCACGCAGGAGCCGTTCGAGGTGACCAGTATATTCTTTGACTTC
AAATCGCGGTGGGCCATAGCTGGCTTGCCTTGCTTGCCGAATATCTCTGT
GTGCAAGTGTACCAGCCCATTAGCTATGGACAGGCAAATCCATACCATAT
CGTTGTGGCTTAGGGCGTTACGGTTTAGGTGATCAAAGAGCGAGCCCAGT
GGATAGTAGTGCGTCATCAGCCAAAGTTGGGTGCACGAGTTCCGCGACGT
CATGTCAGAGCCGATGAATCCCAGAATATTTTCATGTCGTAGCAATATGG
TGCTATATATCTCTGTCTCCCGCTTCCAGGACTCCTCGTCGCGACTGAAG
AATATCTTCACGGCGATGCTTTCGCCATGCCAGTGACCGCGCCAAACCTC
GCC
BO07866.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1891-PA | 1713 | sax-RA | 826..1710 | 903..19 | 4425 | 100 | Minus |
CG1891-PB | 1608 | sax-RB | 721..1605 | 903..19 | 4425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:37:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sax-RC | 2451 | CG1891-RC | 916..1800 | 903..19 | 4425 | 100 | Minus |
sax-RB | 2716 | CG1891-RB | 1181..2065 | 903..19 | 4425 | 100 | Minus |
sax-RA | 2415 | CG1891-RA | 880..1764 | 903..19 | 4425 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:37:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7808508..7808920 | 804..392 | 2065 | 100 | Minus |
2R | 25286936 | 2R | 7808980..7809211 | 393..162 | 1145 | 99.6 | Minus |
2R | 25286936 | 2R | 7809269..7809416 | 166..19 | 740 | 100 | Minus |
2R | 25286936 | 2R | 7808266..7808366 | 903..803 | 505 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 05:37:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fw2 | 3961 | Fw2 FW2 3961bp | 1028..1072 | 220..177 | 114 | 75.6 | Minus |
Porto1 | 4682 | Porto1 DOC5 4682bp | 3641..3736 | 439..348 | 110 | 60.4 | Minus |
BO07866.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:23 Download gff for
BO07866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sax-PA | 826..1713 | 18..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:59 Download gff for
BO07866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1891-PB | 721..1608 | 18..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:05:21 Download gff for
BO07866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sax-RA | 880..1764 | 19..903 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:51:57 Download gff for
BO07866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sax-RA | 880..1764 | 19..903 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:51:57 Download gff for
BO07866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7808266..7808366 | 803..903 | 100 | -> | Minus |
2R | 7808510..7808920 | 392..802 | 100 | -> | Minus |
2R | 7808982..7809207 | 166..391 | 100 | -> | Minus |
2R | 7809270..7809416 | 19..165 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:05:21 Download gff for
BO07866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3695771..3695871 | 803..903 | 100 | -> | Minus |
arm_2R | 3696015..3696425 | 392..802 | 100 | -> | Minus |
arm_2R | 3696487..3696712 | 166..391 | 100 | -> | Minus |
arm_2R | 3696775..3696921 | 19..165 | 100 | | Minus |
BO07866.5prime Sequence
944 bp (781 high quality bases) assembled on 2006-01-06
> BO07866.5prime
GAAGTTATCAGTCGACATGGAGCTCTCCTCCGCCTCATCCGCCCATCTCA
ATGGCAAGGAGCTACCGGCCGTGCCACAGAACTCGGTGCAGACGCATCCC
AGATACAAATGCTACTCCTGCGAGCCGCCCTGTCGGGATCCCTATGAGTT
TACCCACACCTGCCAGAATGCGATTCAGTGCTGGAAGTCGCGCACACGCG
ATGCCGATGGTCAGGTGCAGGAGTCACGCGGCTGCAGCACCTCGCCGGAT
CAACTGCCCATGATCTGCAGCCAGAACTCCTTGAAGATCAACGGGCCCAG
TAAACGCAATACGGGGAAGTTCGTGAATGTGGTCTGCTGTGCCGGTGATT
ACTGCAATGAGGGAGACTTTCCGGAACTGCTGCCCTTCGACAGCAATGAT
GTGACGGTGATAACCGCGGATACCAGTAGCATAAGCAAGATGCTCGTCGC
CGTTCTGGGTCCTTTTCTGGTCATCGCTCTGCTGGGCGCCGTGACCATCT
TCTTCATTCGTCGTAGCCATCGCAAGCGTCTGGCTGCCTCGCGAACCAAA
CAGGACCCGGAAGCGTATCTGGTCAATGATGAGCTGCTCCGCGCCACCAG
CGCCGGGGACAGTACGCTGAGGGAGTATCTGCAGCACTCGGTGACCTCCG
GCTCGGGCAGCGGATTGCCGCTGCTAGTGCAGCGTACGCTAGCCAAACAG
GTCACCCTGATCGAGTGCATTGGACGAGGCAAATACGGCGAGGTTTGGCG
CGGTCACTGGCATGGCGAAAGCATCGCCGTGAAGATATTCTTCAGTCGCG
ACGAGGAGTCCTGGAAGCGGGAGACAGAGATATATAGCACCATATTGCTA
CGACATGAAAATATTCTGGGATTCATCGGCTCTGACATGACGTCGCGGAA
CTCGTGCACCCAACTTTGGCTGATGACGCACTACTATCCACTGG
BO07866.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1891-PA | 1713 | sax-RA | 103..1033 | 14..944 | 4655 | 100 | Plus |
CG1891-PB | 1608 | sax-RB | 1..928 | 17..944 | 4640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:59:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sax-RB | 2716 | CG1891-RB | 458..1388 | 14..944 | 4655 | 100 | Plus |
sax-RA | 2415 | CG1891-RA | 157..1087 | 14..944 | 4655 | 100 | Plus |
sax-RC | 2451 | CG1891-RC | 280..1123 | 101..944 | 4220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:59:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7807705..7808366 | 176..837 | 3310 | 100 | Plus |
2R | 25286936 | 2R | 7808508..7808616 | 836..944 | 545 | 100 | Plus |
2R | 25286936 | 2R | 7807113..7807201 | 14..102 | 445 | 100 | Plus |
2R | 25286936 | 2R | 7807566..7807644 | 100..178 | 395 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 02:59:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
opus | 7521 | opus OPUS 7521bp | 3516..3616 | 48..154 | 115 | 62 | Plus |
BO07866.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:24 Download gff for
BO07866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sax-PA | 103..1033 | 14..944 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:00 Download gff for
BO07866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1891-PA | 103..1033 | 14..944 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:23:42 Download gff for
BO07866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sax-RA | 157..1087 | 14..944 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:24:35 Download gff for
BO07866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sax-RA | 157..1087 | 14..944 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:24:35 Download gff for
BO07866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7807113..7807201 | 14..102 | 100 | -> | Plus |
2R | 7807569..7807644 | 103..178 | 100 | -> | Plus |
2R | 7807708..7808366 | 179..837 | 100 | -> | Plus |
2R | 7808510..7808616 | 838..944 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:23:42 Download gff for
BO07866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3694618..3694706 | 14..102 | 100 | -> | Plus |
arm_2R | 3695074..3695149 | 103..178 | 100 | -> | Plus |
arm_2R | 3695213..3695871 | 179..837 | 100 | -> | Plus |
arm_2R | 3696015..3696121 | 838..944 | 100 | | Plus |
BO07866.complete Sequence
1639 bp (1639 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630970
> BO07866.complete
GAAGTTATCAGTCGACATGGAGCTCTCCTCCGCCTCATCCGCCCATCTCA
ATGGCAAGGAGCTACCGGCCGTGCCACAGAACTCGGTGCAGACGCATCCC
AGATACAAATGCTACTCCTGCGAGCCGCCCTGTCGGGATCCCTATGAGTT
TACCCACACCTGCCAGAATGCGATTCAGTGCTGGAAGTCGCGCACACGCG
ATGCCGATGGTCAGGTGCAGGAGTCACGCGGCTGCAGCACCTCGCCGGAT
CAACTGCCCATGATCTGCAGCCAGAACTCCTTGAAGATCAACGGGCCCAG
TAAACGCAATACGGGGAAGTTCGTGAATGTGGTCTGCTGTGCCGGTGATT
ACTGCAATGAGGGAGACTTTCCGGAACTGCTGCCCTTCGACAGCAATGAT
GTGACGGTGATAACCGCGGATACCAGTAGCATAAGCAAGATGCTCGTCGC
CGTTCTGGGTCCTTTTCTGGTCATCGCTCTGCTGGGCGCCGTGACCATCT
TCTTCATTCGTCGTAGCCATCGCAAGCGTCTGGCTGCCTCGCGAACCAAA
CAGGACCCGGAAGCGTATCTGGTCAATGATGAGCTGCTCCGCGCCACCAG
CGCCGGGGACAGTACGCTGAGGGAGTATCTGCAGCACTCGGTGACCTCCG
GCTCGGGCAGCGGATTGCCGCTGCTAGTGCAGCGTACGCTAGCCAAACAG
GTCACCCTGATCGAGTGCATTGGACGAGGCAAATACGGCGAGGTTTGGCG
CGGTCACTGGCATGGCGAAAGCATCGCCGTGAAGATATTCTTCAGTCGCG
ACGAGGAGTCCTGGAAGCGGGAGACAGAGATATATAGCACCATATTGCTA
CGACATGAAAATATTCTGGGATTCATCGGCTCTGACATGACGTCGCGGAA
CTCGTGCACCCAACTTTGGCTGATGACGCACTACTATCCACTGGGCTCGC
TCTTTGATCACCTAAACCGTAACGCCCTAAGCCACAACGATATGGTATGG
ATTTGCCTGTCCATAGCTAATGGGCTGGTACACTTGCACACAGAGATATT
CGGCAAGCAAGGCAAGCCAGCTATGGCCCACCGCGATTTGAAGTCAAAGA
ATATACTGGTCACCTCGAACGGCTCCTGCGTGATAGCCGATTTTGGACTG
GCCGTTACCCATTCGCACGTCACAGGACAACTGGACCTGGGCAACAACCC
CAAAGTGGGCACCAAGCGCTACATGGCCCCAGAGGTTCTTGATGAAAGCA
TTGATTTAGAATGCTTCGAAGCACTACGCCGGACAGATATTTACGCATTT
GGACTTGTCCTCTGGGAGGTTTGTCGCCGCACCATTTCTTGCGGCATAGC
AGAGGAGTACAAGGTGCCCTTCTACGATGTGGTGCCAATGGATCCCAGCT
TCGAGGATATGCGCAAGGTGGTCTGCATCGACAACTACAGGCCCTCCATT
CCCAATCGCTGGAGCTCGGATTCGTTAATGACTGGCATGTCCAAGCTCAT
GAAGGAGTGCTGGCACCAAAACCCCGACGTGCGCTTGCCAGCGCTGCGCA
TCAAAAAGACTATACATAAGCTGGCTTCCGCTGACGAGAAGATACGCCTG
GACTTCGACGAGGTCTGCGTTGCAAGCTTTCTAGACCAT
BO07866.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:43:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sax-RA | 1713 | CG1891-PA | 103..1710 | 14..1621 | 8040 | 100 | Plus |
sax-RB | 1608 | CG1891-PB | 1..1605 | 17..1621 | 8025 | 100 | Plus |
sax-RC | 1749 | CG1891-PC | 226..1746 | 101..1621 | 7605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:43:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sax-RB | 2716 | CG1891-RB | 458..2065 | 14..1621 | 8040 | 100 | Plus |
sax-RA | 2415 | CG1891-RA | 157..1764 | 14..1621 | 8040 | 100 | Plus |
sax-RC | 2451 | CG1891-RC | 280..1800 | 101..1621 | 7605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:43:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7807705..7808366 | 176..837 | 3310 | 100 | Plus |
2R | 25286936 | 2R | 7808508..7808920 | 836..1248 | 2065 | 100 | Plus |
2R | 25286936 | 2R | 7808980..7809211 | 1247..1478 | 1145 | 99.6 | Plus |
2R | 25286936 | 2R | 7809269..7809416 | 1474..1621 | 740 | 100 | Plus |
2R | 25286936 | 2R | 7807113..7807201 | 14..102 | 445 | 100 | Plus |
2R | 25286936 | 2R | 7807566..7807644 | 100..178 | 395 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 23:43:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
opus | 7521 | opus OPUS 7521bp | 3516..3616 | 48..154 | 115 | 62 | Plus |
Fw2 | 3961 | Fw2 FW2 3961bp | 1028..1072 | 1420..1463 | 114 | 75.6 | Plus |
BO07866.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:13 Download gff for
BO07866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sax-RA | 103..1713 | 14..1622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:35 Download gff for
BO07866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sax-RB | 458..2065 | 14..1621 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:17 Download gff for
BO07866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sax-RA | 160..1764 | 17..1623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:13 Download gff for
BO07866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sax-RB | 458..2065 | 14..1621 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:51 Download gff for
BO07866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sax-RA | 160..1764 | 17..1623 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:51 Download gff for
BO07866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7807116..7807201 | 17..102 | 100 | -> | Plus |
2R | 7807569..7807644 | 103..178 | 100 | -> | Plus |
2R | 7807708..7808366 | 179..837 | 100 | -> | Plus |
2R | 7808510..7808920 | 838..1248 | 100 | -> | Plus |
2R | 7808982..7809207 | 1249..1474 | 100 | -> | Plus |
2R | 7809270..7809416 | 1475..1623 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:17 Download gff for
BO07866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3694621..3694706 | 17..102 | 100 | -> | Plus |
arm_2R | 3695074..3695149 | 103..178 | 100 | -> | Plus |
arm_2R | 3695213..3695871 | 179..837 | 100 | -> | Plus |
arm_2R | 3696015..3696425 | 838..1248 | 100 | -> | Plus |
arm_2R | 3696487..3696712 | 1249..1474 | 100 | -> | Plus |
arm_2R | 3696775..3696921 | 1475..1623 | 98 | | Plus |
BO07866.pep Sequence
Translation from 16 to 1639
> BO07866.pep
MELSSASSAHLNGKELPAVPQNSVQTHPRYKCYSCEPPCRDPYEFTHTCQ
NAIQCWKSRTRDADGQVQESRGCSTSPDQLPMICSQNSLKINGPSKRNTG
KFVNVVCCAGDYCNEGDFPELLPFDSNDVTVITADTSSISKMLVAVLGPF
LVIALLGAVTIFFIRRSHRKRLAASRTKQDPEAYLVNDELLRATSAGDST
LREYLQHSVTSGSGSGLPLLVQRTLAKQVTLIECIGRGKYGEVWRGHWHG
ESIAVKIFFSRDEESWKRETEIYSTILLRHENILGFIGSDMTSRNSCTQL
WLMTHYYPLGSLFDHLNRNALSHNDMVWICLSIANGLVHLHTEIFGKQGK
PAMAHRDLKSKNILVTSNGSCVIADFGLAVTHSHVTGQLDLGNNPKVGTK
RYMAPEVLDESIDLECFEALRRTDIYAFGLVLWEVCRRTISCGIAEEYKV
PFYDVVPMDPSFEDMRKVVCIDNYRPSIPNRWSSDSLMTGMSKLMKECWH
QNPDVRLPALRIKKTIHKLASADEKIRLDFDEVCVASFLDH
BO07866.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sax-PB | 535 | CG1891-PB | 1..535 | 1..535 | 2852 | 100 | Plus |
sax-PA | 570 | CG1891-PA | 36..570 | 1..535 | 2852 | 100 | Plus |
sax-PC | 582 | CG1891-PC | 36..582 | 1..535 | 2829 | 97.8 | Plus |
babo-PC | 595 | CG8224-PC | 123..594 | 20..527 | 1066 | 45.2 | Plus |
babo-PA | 601 | CG8224-PA | 123..600 | 20..527 | 1052 | 44.1 | Plus |