Clone BO07866 Report

Search the DGRC for BO07866

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:78
Well:66
Vector:pDNR-Dual
Associated Gene/Transcriptsax-RB
Protein status:BO07866.pep: validated not full length
Sequenced Size:1639

Clone Sequence Records

BO07866.3prime Sequence

903 bp (847 high quality bases) assembled on 2006-01-06

> BO07866.3prime
ATGGTCTAGAAAGCTTGCAACGCAGACCTCGTCGAAGTCCAGGCGTATCT
TCTCGTCAGCGGAAGCCAGCTTATGTATAGTCTTTTTGATGCGCAGCGCT
GGCAAGCGCACGTCGGGGTTTTGGTGCCAGCACTCCTTCATGAGCTTGGA
CATGCCAGTCATTAACGAATCCGAGCTCCAGCGATTGGGAATGGAGGGCC
TGTAGTTGTCGATGCAGACCACCTTGCGCATATCCTCGAAGCTGGGATCC
ATTGGCACCACATCGTAGAAGGGCACCTTGTACTCCTCTGCTATGCCGCA
AGAAATGGTGCGGCGACAAACCTCCCAGAGGACAAGTCCAAATGCGTAAA
TATCTGTCCGGCGTAGTGCTTCGAAGCATTCTAAATCAATGCTTTCATCA
AGAACCTCTGGGGCCATGTAGCGCTTGGTGCCCACTTTGGGGTTGTTGCC
CAGGTCCAGTTGTCCTGTGACGTGCGAATGGGTAACGGCCAGTCCAAAAT
CGGCTATCACGCAGGAGCCGTTCGAGGTGACCAGTATATTCTTTGACTTC
AAATCGCGGTGGGCCATAGCTGGCTTGCCTTGCTTGCCGAATATCTCTGT
GTGCAAGTGTACCAGCCCATTAGCTATGGACAGGCAAATCCATACCATAT
CGTTGTGGCTTAGGGCGTTACGGTTTAGGTGATCAAAGAGCGAGCCCAGT
GGATAGTAGTGCGTCATCAGCCAAAGTTGGGTGCACGAGTTCCGCGACGT
CATGTCAGAGCCGATGAATCCCAGAATATTTTCATGTCGTAGCAATATGG
TGCTATATATCTCTGTCTCCCGCTTCCAGGACTCCTCGTCGCGACTGAAG
AATATCTTCACGGCGATGCTTTCGCCATGCCAGTGACCGCGCCAAACCTC
GCC

BO07866.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1891-PA 1713 sax-RA 826..1710 903..19 4425 100 Minus
CG1891-PB 1608 sax-RB 721..1605 903..19 4425 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
sax-RC 2451 CG1891-RC 916..1800 903..19 4425 100 Minus
sax-RB 2716 CG1891-RB 1181..2065 903..19 4425 100 Minus
sax-RA 2415 CG1891-RA 880..1764 903..19 4425 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7808508..7808920 804..392 2065 100 Minus
2R 25286936 2R 7808980..7809211 393..162 1145 99.6 Minus
2R 25286936 2R 7809269..7809416 166..19 740 100 Minus
2R 25286936 2R 7808266..7808366 903..803 505 100 Minus
Blast to na_te.dros performed 2015-02-13 05:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
Fw2 3961 Fw2 FW2 3961bp 1028..1072 220..177 114 75.6 Minus
Porto1 4682 Porto1 DOC5 4682bp 3641..3736 439..348 110 60.4 Minus

BO07866.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:23 Download gff for BO07866.3prime
Subject Subject Range Query Range Percent Splice Strand
sax-PA 826..1713 18..903 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:18:59 Download gff for BO07866.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1891-PB 721..1608 18..903 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:05:21 Download gff for BO07866.3prime
Subject Subject Range Query Range Percent Splice Strand
sax-RA 880..1764 19..903 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:51:57 Download gff for BO07866.3prime
Subject Subject Range Query Range Percent Splice Strand
sax-RA 880..1764 19..903 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:51:57 Download gff for BO07866.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7808266..7808366 803..903 100 -> Minus
2R 7808510..7808920 392..802 100 -> Minus
2R 7808982..7809207 166..391 100 -> Minus
2R 7809270..7809416 19..165 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:05:21 Download gff for BO07866.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3695771..3695871 803..903 100 -> Minus
arm_2R 3696015..3696425 392..802 100 -> Minus
arm_2R 3696487..3696712 166..391 100 -> Minus
arm_2R 3696775..3696921 19..165 100   Minus

BO07866.5prime Sequence

944 bp (781 high quality bases) assembled on 2006-01-06

> BO07866.5prime
GAAGTTATCAGTCGACATGGAGCTCTCCTCCGCCTCATCCGCCCATCTCA
ATGGCAAGGAGCTACCGGCCGTGCCACAGAACTCGGTGCAGACGCATCCC
AGATACAAATGCTACTCCTGCGAGCCGCCCTGTCGGGATCCCTATGAGTT
TACCCACACCTGCCAGAATGCGATTCAGTGCTGGAAGTCGCGCACACGCG
ATGCCGATGGTCAGGTGCAGGAGTCACGCGGCTGCAGCACCTCGCCGGAT
CAACTGCCCATGATCTGCAGCCAGAACTCCTTGAAGATCAACGGGCCCAG
TAAACGCAATACGGGGAAGTTCGTGAATGTGGTCTGCTGTGCCGGTGATT
ACTGCAATGAGGGAGACTTTCCGGAACTGCTGCCCTTCGACAGCAATGAT
GTGACGGTGATAACCGCGGATACCAGTAGCATAAGCAAGATGCTCGTCGC
CGTTCTGGGTCCTTTTCTGGTCATCGCTCTGCTGGGCGCCGTGACCATCT
TCTTCATTCGTCGTAGCCATCGCAAGCGTCTGGCTGCCTCGCGAACCAAA
CAGGACCCGGAAGCGTATCTGGTCAATGATGAGCTGCTCCGCGCCACCAG
CGCCGGGGACAGTACGCTGAGGGAGTATCTGCAGCACTCGGTGACCTCCG
GCTCGGGCAGCGGATTGCCGCTGCTAGTGCAGCGTACGCTAGCCAAACAG
GTCACCCTGATCGAGTGCATTGGACGAGGCAAATACGGCGAGGTTTGGCG
CGGTCACTGGCATGGCGAAAGCATCGCCGTGAAGATATTCTTCAGTCGCG
ACGAGGAGTCCTGGAAGCGGGAGACAGAGATATATAGCACCATATTGCTA
CGACATGAAAATATTCTGGGATTCATCGGCTCTGACATGACGTCGCGGAA
CTCGTGCACCCAACTTTGGCTGATGACGCACTACTATCCACTGG

BO07866.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG1891-PA 1713 sax-RA 103..1033 14..944 4655 100 Plus
CG1891-PB 1608 sax-RB 1..928 17..944 4640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
sax-RB 2716 CG1891-RB 458..1388 14..944 4655 100 Plus
sax-RA 2415 CG1891-RA 157..1087 14..944 4655 100 Plus
sax-RC 2451 CG1891-RC 280..1123 101..944 4220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7807705..7808366 176..837 3310 100 Plus
2R 25286936 2R 7808508..7808616 836..944 545 100 Plus
2R 25286936 2R 7807113..7807201 14..102 445 100 Plus
2R 25286936 2R 7807566..7807644 100..178 395 100 Plus
Blast to na_te.dros performed 2015-02-11 02:59:52
Subject Length Description Subject Range Query Range Score Percent Strand
opus 7521 opus OPUS 7521bp 3516..3616 48..154 115 62 Plus

BO07866.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:24 Download gff for BO07866.5prime
Subject Subject Range Query Range Percent Splice Strand
sax-PA 103..1033 14..944 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:00 Download gff for BO07866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1891-PA 103..1033 14..944 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:23:42 Download gff for BO07866.5prime
Subject Subject Range Query Range Percent Splice Strand
sax-RA 157..1087 14..944 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:24:35 Download gff for BO07866.5prime
Subject Subject Range Query Range Percent Splice Strand
sax-RA 157..1087 14..944 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:24:35 Download gff for BO07866.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7807113..7807201 14..102 100 -> Plus
2R 7807569..7807644 103..178 100 -> Plus
2R 7807708..7808366 179..837 100 -> Plus
2R 7808510..7808616 838..944 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:23:42 Download gff for BO07866.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3694618..3694706 14..102 100 -> Plus
arm_2R 3695074..3695149 103..178 100 -> Plus
arm_2R 3695213..3695871 179..837 100 -> Plus
arm_2R 3696015..3696121 838..944 100   Plus

BO07866.complete Sequence

1639 bp (1639 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630970

> BO07866.complete
GAAGTTATCAGTCGACATGGAGCTCTCCTCCGCCTCATCCGCCCATCTCA
ATGGCAAGGAGCTACCGGCCGTGCCACAGAACTCGGTGCAGACGCATCCC
AGATACAAATGCTACTCCTGCGAGCCGCCCTGTCGGGATCCCTATGAGTT
TACCCACACCTGCCAGAATGCGATTCAGTGCTGGAAGTCGCGCACACGCG
ATGCCGATGGTCAGGTGCAGGAGTCACGCGGCTGCAGCACCTCGCCGGAT
CAACTGCCCATGATCTGCAGCCAGAACTCCTTGAAGATCAACGGGCCCAG
TAAACGCAATACGGGGAAGTTCGTGAATGTGGTCTGCTGTGCCGGTGATT
ACTGCAATGAGGGAGACTTTCCGGAACTGCTGCCCTTCGACAGCAATGAT
GTGACGGTGATAACCGCGGATACCAGTAGCATAAGCAAGATGCTCGTCGC
CGTTCTGGGTCCTTTTCTGGTCATCGCTCTGCTGGGCGCCGTGACCATCT
TCTTCATTCGTCGTAGCCATCGCAAGCGTCTGGCTGCCTCGCGAACCAAA
CAGGACCCGGAAGCGTATCTGGTCAATGATGAGCTGCTCCGCGCCACCAG
CGCCGGGGACAGTACGCTGAGGGAGTATCTGCAGCACTCGGTGACCTCCG
GCTCGGGCAGCGGATTGCCGCTGCTAGTGCAGCGTACGCTAGCCAAACAG
GTCACCCTGATCGAGTGCATTGGACGAGGCAAATACGGCGAGGTTTGGCG
CGGTCACTGGCATGGCGAAAGCATCGCCGTGAAGATATTCTTCAGTCGCG
ACGAGGAGTCCTGGAAGCGGGAGACAGAGATATATAGCACCATATTGCTA
CGACATGAAAATATTCTGGGATTCATCGGCTCTGACATGACGTCGCGGAA
CTCGTGCACCCAACTTTGGCTGATGACGCACTACTATCCACTGGGCTCGC
TCTTTGATCACCTAAACCGTAACGCCCTAAGCCACAACGATATGGTATGG
ATTTGCCTGTCCATAGCTAATGGGCTGGTACACTTGCACACAGAGATATT
CGGCAAGCAAGGCAAGCCAGCTATGGCCCACCGCGATTTGAAGTCAAAGA
ATATACTGGTCACCTCGAACGGCTCCTGCGTGATAGCCGATTTTGGACTG
GCCGTTACCCATTCGCACGTCACAGGACAACTGGACCTGGGCAACAACCC
CAAAGTGGGCACCAAGCGCTACATGGCCCCAGAGGTTCTTGATGAAAGCA
TTGATTTAGAATGCTTCGAAGCACTACGCCGGACAGATATTTACGCATTT
GGACTTGTCCTCTGGGAGGTTTGTCGCCGCACCATTTCTTGCGGCATAGC
AGAGGAGTACAAGGTGCCCTTCTACGATGTGGTGCCAATGGATCCCAGCT
TCGAGGATATGCGCAAGGTGGTCTGCATCGACAACTACAGGCCCTCCATT
CCCAATCGCTGGAGCTCGGATTCGTTAATGACTGGCATGTCCAAGCTCAT
GAAGGAGTGCTGGCACCAAAACCCCGACGTGCGCTTGCCAGCGCTGCGCA
TCAAAAAGACTATACATAAGCTGGCTTCCGCTGACGAGAAGATACGCCTG
GACTTCGACGAGGTCTGCGTTGCAAGCTTTCTAGACCAT

BO07866.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
sax-RA 1713 CG1891-PA 103..1710 14..1621 8040 100 Plus
sax-RB 1608 CG1891-PB 1..1605 17..1621 8025 100 Plus
sax-RC 1749 CG1891-PC 226..1746 101..1621 7605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:43:17
Subject Length Description Subject Range Query Range Score Percent Strand
sax-RB 2716 CG1891-RB 458..2065 14..1621 8040 100 Plus
sax-RA 2415 CG1891-RA 157..1764 14..1621 8040 100 Plus
sax-RC 2451 CG1891-RC 280..1800 101..1621 7605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7807705..7808366 176..837 3310 100 Plus
2R 25286936 2R 7808508..7808920 836..1248 2065 100 Plus
2R 25286936 2R 7808980..7809211 1247..1478 1145 99.6 Plus
2R 25286936 2R 7809269..7809416 1474..1621 740 100 Plus
2R 25286936 2R 7807113..7807201 14..102 445 100 Plus
2R 25286936 2R 7807566..7807644 100..178 395 100 Plus
Blast to na_te.dros performed 2014-11-27 23:43:14
Subject Length Description Subject Range Query Range Score Percent Strand
opus 7521 opus OPUS 7521bp 3516..3616 48..154 115 62 Plus
Fw2 3961 Fw2 FW2 3961bp 1028..1072 1420..1463 114 75.6 Plus

BO07866.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:13 Download gff for BO07866.complete
Subject Subject Range Query Range Percent Splice Strand
sax-RA 103..1713 14..1622 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:35 Download gff for BO07866.complete
Subject Subject Range Query Range Percent Splice Strand
sax-RB 458..2065 14..1621 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:17 Download gff for BO07866.complete
Subject Subject Range Query Range Percent Splice Strand
sax-RA 160..1764 17..1623 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:13 Download gff for BO07866.complete
Subject Subject Range Query Range Percent Splice Strand
sax-RB 458..2065 14..1621 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:51 Download gff for BO07866.complete
Subject Subject Range Query Range Percent Splice Strand
sax-RA 160..1764 17..1623 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:51 Download gff for BO07866.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7807116..7807201 17..102 100 -> Plus
2R 7807569..7807644 103..178 100 -> Plus
2R 7807708..7808366 179..837 100 -> Plus
2R 7808510..7808920 838..1248 100 -> Plus
2R 7808982..7809207 1249..1474 100 -> Plus
2R 7809270..7809416 1475..1623 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:17 Download gff for BO07866.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3694621..3694706 17..102 100 -> Plus
arm_2R 3695074..3695149 103..178 100 -> Plus
arm_2R 3695213..3695871 179..837 100 -> Plus
arm_2R 3696015..3696425 838..1248 100 -> Plus
arm_2R 3696487..3696712 1249..1474 100 -> Plus
arm_2R 3696775..3696921 1475..1623 98   Plus

BO07866.pep Sequence

Translation from 16 to 1639

> BO07866.pep
MELSSASSAHLNGKELPAVPQNSVQTHPRYKCYSCEPPCRDPYEFTHTCQ
NAIQCWKSRTRDADGQVQESRGCSTSPDQLPMICSQNSLKINGPSKRNTG
KFVNVVCCAGDYCNEGDFPELLPFDSNDVTVITADTSSISKMLVAVLGPF
LVIALLGAVTIFFIRRSHRKRLAASRTKQDPEAYLVNDELLRATSAGDST
LREYLQHSVTSGSGSGLPLLVQRTLAKQVTLIECIGRGKYGEVWRGHWHG
ESIAVKIFFSRDEESWKRETEIYSTILLRHENILGFIGSDMTSRNSCTQL
WLMTHYYPLGSLFDHLNRNALSHNDMVWICLSIANGLVHLHTEIFGKQGK
PAMAHRDLKSKNILVTSNGSCVIADFGLAVTHSHVTGQLDLGNNPKVGTK
RYMAPEVLDESIDLECFEALRRTDIYAFGLVLWEVCRRTISCGIAEEYKV
PFYDVVPMDPSFEDMRKVVCIDNYRPSIPNRWSSDSLMTGMSKLMKECWH
QNPDVRLPALRIKKTIHKLASADEKIRLDFDEVCVASFLDH

BO07866.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
sax-PB 535 CG1891-PB 1..535 1..535 2852 100 Plus
sax-PA 570 CG1891-PA 36..570 1..535 2852 100 Plus
sax-PC 582 CG1891-PC 36..582 1..535 2829 97.8 Plus
babo-PC 595 CG8224-PC 123..594 20..527 1066 45.2 Plus
babo-PA 601 CG8224-PA 123..600 20..527 1052 44.1 Plus