Clone Sequence Records
BO07867.3prime Sequence
833 bp (826 high quality bases) assembled on 2006-01-06
> BO07867.3prime
ATGGTCTAGAAAGCTTGCAATGCGCTCCGTGACGTAGACCTTCGCCGAGG
CGGGCGCATTGGAACGCCGCACCGCGAAGGTGACGATGATGCCAATGAAG
ATCAGGGTCACGCCGATGGCACTGGTGATGTAGTGCTCCACCAGCTTGTT
CTCACTGCTCACGCCCGCCTCGTTGACGGTTTCGCGCTCCTTCTCGATCA
GTCCCGTGACGGATGTGGCAATGGCCAGCCAGAAGTTGGCCAGTCCCAAG
CTGGCGTGGATGGGCACCATGGCCGAGCGGCAGCTGTAGGTCTTGTTCTC
ACAGCACAGCATTACCAGAAAGCTGAAGAAGCCGATCACAAACTGGAGCA
CGAACATGCCCATTGTCACGAAGCCCAGCCACGAGTGGAGGCTATAGAAG
TTGACCTTATGCAACGCGTCGTGGGAAGCGAAGACGGATATGAAACCCAG
GGCGATGCACGGAATGGCCACGGCGTGGAAGAACATGTGGATCAGCTTCA
CATAGATTTGCTTCACGCAGCGGCACAGACGATAGATCAAGATGGAAAAT
CCGGAGAGCGTGACGAAGCCAGCAATCATGAGGATGGGATGCAGATTGAA
CTGCTGCTTGGGACTCTCCGACCAGGCGAAGCCATCGCGGTAGAACATCA
CCCAGAAGAGGGTTAGCACCAGCACGCCCACCAGCAGGATCGTGGACAGG
ATGACGATCAGCAAGTATTCGCACCAGGAGCAGCAATTCCAGGCATTATC
TGGATCCTCCTCATAGCGCGATGTTGTCGTTCCTCCACGCGGCATTTTGG
CCAAGTGACGATCTCGCATGTCGACTGATACCT
BO07867.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8776-PE | 804 | CG8776-RE | 1..801 | 819..19 | 4005 | 100 | Minus |
| CG8776-PB | 804 | CG8776-RB | 1..801 | 819..19 | 4005 | 100 | Minus |
| CG8776-PA | 873 | CG8776-RA | 120..870 | 769..19 | 3755 | 100 | Minus |
| CG8776-PD | 633 | CG8776-RD | 1..630 | 648..19 | 3150 | 100 | Minus |
| CG8776-PC | 633 | CG8776-RC | 1..630 | 648..19 | 3150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:30:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nemy-RB | 1804 | CG8776-RB | 254..1054 | 819..19 | 4005 | 100 | Minus |
| nemy-RG | 1849 | CG8776-RG | 299..1099 | 819..19 | 4005 | 100 | Minus |
| nemy-RE | 2224 | CG8776-RE | 766..1566 | 819..19 | 4005 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:30:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12660973..12661196 | 546..769 | 1120 | 100 | Plus |
| 2R | 25286936 | 2R | 12660678..12660900 | 323..545 | 1115 | 100 | Plus |
| 2R | 25286936 | 2R | 12660457..12660630 | 158..331 | 855 | 99.4 | Plus |
| 2R | 25286936 | 2R | 12660247..12660387 | 19..159 | 705 | 100 | Plus |
| 2R | 25286936 | 2R | 12664984..12665034 | 769..819 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:30:56 has no hits.
BO07867.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:25 Download gff for
BO07867.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8776-PB | 1..804 | 18..819 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:01 Download gff for
BO07867.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8776-PB | 1..804 | 18..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:13:05 Download gff for
BO07867.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nemy-RE | 760..1566 | 19..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:11:21 Download gff for
BO07867.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nemy-RE | 760..1566 | 19..825 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:11:21 Download gff for
BO07867.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12660973..12661196 | 546..769 | 100 | <- | Plus |
| 2R | 12664985..12665040 | 770..825 | 96 | | Plus |
| 2R | 12660247..12660385 | 19..157 | 100 | <- | Plus |
| 2R | 12660457..12660621 | 158..322 | 100 | <- | Plus |
| 2R | 12660678..12660900 | 323..545 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:13:05 Download gff for
BO07867.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8547962..8548126 | 158..322 | 100 | <- | Plus |
| arm_2R | 8547752..8547890 | 19..157 | 100 | <- | Plus |
| arm_2R | 8548183..8548405 | 323..545 | 100 | <- | Plus |
| arm_2R | 8548478..8548701 | 546..769 | 100 | <- | Plus |
| arm_2R | 8552490..8552545 | 770..825 | 96 | | Plus |
BO07867.5prime Sequence
833 bp (792 high quality bases) assembled on 2006-01-06
> BO07867.5prime
GAAGTTATCAGTCGACATGCGAGATCGTCACTTGGCCAAAATGCCGCGTG
GAGGAACGACAACATCGCGCTATGAGGAGGATCCAGATAATGCCTGGAAT
TGCTGCTCCTGGTGCGAATACTTGCTGATCGTCATCCTGTCCACGATCCT
GCTGGTGGGCGTGCTGGTGCTAACCCTCTTCTGGGTGATGTTCTACCGCG
ATGGCTTCGCCTGGTCGGAGAGTCCCAAGCAGCAGTTCAATCTGCATCCC
ATCCTCATGATTGCTGGCTTCGTCACGCTCTCCGGATTTTCCATCTTGAT
CTATCGTCTGTGCCGCTGCGTGAAGCAAATCTATGTGAAGCTGATCCACA
TGTTCTTCCACGCCGTGGCCATTCCGTGCATCGCCCTGGGTTTCATATCC
GTCTTCGCTTCCCACGACGCGTTGCATAAGGTCAACTTCTATAGCCTCCA
CTCGTGGCTGGGCTTCGTGACAATGGGCATGTTCGTGCTCCAGTTTGTGA
TCGGCTTCTTCAGCTTTCTGGTAATGCTGTGCTGTGAGAACAAGACCTAC
AGCTGCCGCTCGGCCATGGTGCCCATCCACGCCAGCTTGGGACTGGCCAA
CTTCTGGCTGGCCATTGCCACATCCGTCACGGGACTGATCGAGAAGGAGC
GCGAAACCGTCAACGAGGCGGGCGTGAGCAGTGAGAACAAGCTGGTGGAG
CACTACATCACCAGTGCCATCGGCGTGACCCTGATCTTCATTGGCATCAT
CGTCACCTTCGCGGTGCGGCGTTCCAATGCGCCCGCCTCGGCGAAAGTCT
ACGTCACGGAGCGCATTGCAAGCTTTCTAGACC
BO07867.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8776-PE | 804 | CG8776-RE | 1..801 | 17..817 | 3980 | 99.8 | Plus |
| CG8776-PB | 804 | CG8776-RB | 1..801 | 17..817 | 3980 | 99.8 | Plus |
| CG8776-PA | 873 | CG8776-RA | 120..870 | 67..817 | 3730 | 99.8 | Plus |
| CG8776-PD | 633 | CG8776-RD | 1..630 | 188..817 | 3125 | 99.8 | Plus |
| CG8776-PC | 633 | CG8776-RC | 1..630 | 188..817 | 3125 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:23:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nemy-RB | 1804 | CG8776-RB | 254..1054 | 17..817 | 3990 | 99.9 | Plus |
| nemy-RG | 1849 | CG8776-RG | 299..1099 | 17..817 | 3990 | 99.9 | Plus |
| nemy-RE | 2224 | CG8776-RE | 766..1566 | 17..817 | 3990 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:23:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12660973..12661196 | 290..67 | 1120 | 100 | Minus |
| 2R | 25286936 | 2R | 12660678..12660900 | 513..291 | 1115 | 100 | Minus |
| 2R | 25286936 | 2R | 12660457..12660630 | 678..505 | 855 | 99.4 | Minus |
| 2R | 25286936 | 2R | 12660247..12660387 | 817..677 | 690 | 99.3 | Minus |
| 2R | 25286936 | 2R | 12664984..12665034 | 67..17 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:23:34 has no hits.
BO07867.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:26 Download gff for
BO07867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8776-PB | 1..804 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:03 Download gff for
BO07867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8776-PB | 1..804 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:49:33 Download gff for
BO07867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nemy-RE | 760..1566 | 11..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:11:49 Download gff for
BO07867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nemy-RE | 760..1566 | 11..817 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:11:49 Download gff for
BO07867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12660247..12660385 | 679..817 | 99 | <- | Minus |
| 2R | 12660457..12660621 | 514..678 | 100 | <- | Minus |
| 2R | 12660678..12660900 | 291..513 | 100 | <- | Minus |
| 2R | 12660973..12661196 | 67..290 | 100 | <- | Minus |
| 2R | 12664985..12665040 | 11..66 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:49:33 Download gff for
BO07867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8547752..8547890 | 679..817 | 99 | <- | Minus |
| arm_2R | 8547962..8548126 | 514..678 | 100 | <- | Minus |
| arm_2R | 8548183..8548405 | 291..513 | 100 | <- | Minus |
| arm_2R | 8548478..8548701 | 67..290 | 100 | <- | Minus |
| arm_2R | 8552490..8552545 | 11..66 | 96 | | Minus |
BO07867.complete Sequence
835 bp (835 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630971
> BO07867.complete
GAAGTTATCAGTCGACATGCGAGATCGTCACTTGGCCAAAATGCCGCGTG
GAGGAACGACAACATCGCGCTATGAGGAGGATCCAGATAATGCCTGGAAT
TGCTGCTCCTGGTGCGAATACTTGCTGATCGTCATCCTGTCCACGATCCT
GCTGGTGGGCGTGCTGGTGCTAACCCTCTTCTGGGTGATGTTCTACCGCG
ATGGCTTCGCCTGGTCGGAGAGTCCCAAGCAGCAGTTCAATCTGCATCCC
ATCCTCATGATTGCTGGCTTCGTCACGCTCTCCGGATTTTCCATCTTGAT
CTATCGTCTGTGCCGCTGCGTGAAGCAAATCTATGTGAAGCTGATCCACA
TGTTCTTCCACGCCGTGGCCATTCCGTGCATCGCCCTGGGTTTCATATCC
GTCTTCGCTTCCCACGACGCGTTGCATAAGGTCAACTTCTATAGCCTCCA
CTCGTGGCTGGGCTTCGTGACAATGGGCATGTTCGTGCTCCAGTTTGTGA
TCGGCTTCTTCAGCTTTCTGGTAATGCTGTGCTGTGAGAACAAGACCTAC
AGCTGCCGCTCGGCCATGGTGCCCATCCACGCCAGCTTGGGACTGGCCAA
CTTCTGGCTGGCCATTGCCACATCCGTCACGGGACTGATCGAGAAGGAGC
GCGAAACCGTCAACGAGGCGGGCGTGAGCAGTGAGAACAAGCTGGTGGAG
CACTACATCACCAGTGCCATCGGCGTGACCCTGATCTTCATTGGCATCAT
CGTCACCTTCGCGGTGCGGCGTTCCAATGCGCCCGCCTCGGCGAAGGTCT
ACGTCACGGAGCGCATTGCAAGCTTTCTAGACCAT
BO07867.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:11:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nemy-RB | 804 | CG8776-PB | 1..801 | 17..817 | 4005 | 100 | Plus |
| nemy-RG | 804 | CG8776-PG | 1..801 | 17..817 | 4005 | 100 | Plus |
| nemy-RE | 804 | CG8776-PE | 1..801 | 17..817 | 4005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nemy-RB | 1804 | CG8776-RB | 254..1054 | 17..817 | 4005 | 100 | Plus |
| nemy-RG | 1849 | CG8776-RG | 299..1099 | 17..817 | 4005 | 100 | Plus |
| nemy-RE | 2224 | CG8776-RE | 766..1566 | 17..817 | 4005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12660973..12661196 | 290..67 | 1120 | 100 | Minus |
| 2R | 25286936 | 2R | 12660678..12660900 | 513..291 | 1115 | 100 | Minus |
| 2R | 25286936 | 2R | 12660457..12660630 | 678..505 | 855 | 99.4 | Minus |
| 2R | 25286936 | 2R | 12660247..12660387 | 817..677 | 705 | 100 | Minus |
| 2R | 25286936 | 2R | 12664984..12665034 | 67..17 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:11:32 has no hits.
BO07867.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:08 Download gff for
BO07867.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8776-RB | 1..804 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:50 Download gff for
BO07867.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8776-RB | 246..1052 | 11..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:36 Download gff for
BO07867.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nemy-RE | 766..1566 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:08 Download gff for
BO07867.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8776-RB | 246..1052 | 11..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:23 Download gff for
BO07867.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nemy-RE | 766..1566 | 17..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:23 Download gff for
BO07867.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12660457..12660621 | 514..678 | 100 | <- | Minus |
| 2R | 12660678..12660900 | 291..513 | 100 | <- | Minus |
| 2R | 12660245..12660385 | 679..819 | 98 | <- | Minus |
| 2R | 12660973..12661196 | 67..290 | 100 | <- | Minus |
| 2R | 12664985..12665034 | 17..66 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:36 Download gff for
BO07867.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8547750..8547890 | 679..819 | 98 | <- | Minus |
| arm_2R | 8547962..8548126 | 514..678 | 100 | <- | Minus |
| arm_2R | 8548183..8548405 | 291..513 | 100 | <- | Minus |
| arm_2R | 8548478..8548701 | 67..290 | 100 | <- | Minus |
| arm_2R | 8552490..8552539 | 17..66 | 100 | | Minus |
BO07867.pep Sequence
Translation from 16 to 835
> BO07867.pep
MRDRHLAKMPRGGTTTSRYEEDPDNAWNCCSWCEYLLIVILSTILLVGVL
VLTLFWVMFYRDGFAWSESPKQQFNLHPILMIAGFVTLSGFSILIYRLCR
CVKQIYVKLIHMFFHAVAIPCIALGFISVFASHDALHKVNFYSLHSWLGF
VTMGMFVLQFVIGFFSFLVMLCCENKTYSCRSAMVPIHASLGLANFWLAI
ATSVTGLIEKERETVNEAGVSSENKLVEHYITSAIGVTLIFIGIIVTFAV
RRSNAPASAKVYVTERIASFLDH
BO07867.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:33:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nemy-PB | 267 | CG8776-PB | 1..267 | 1..267 | 1398 | 100 | Plus |
| nemy-PG | 267 | CG8776-PG | 1..267 | 1..267 | 1398 | 100 | Plus |
| nemy-PE | 267 | CG8776-PE | 1..267 | 1..267 | 1398 | 100 | Plus |
| nemy-PK | 266 | CG8776-PK | 1..266 | 1..267 | 1382 | 99.6 | Plus |
| nemy-PA | 290 | CG8776-PA | 41..290 | 18..267 | 1308 | 100 | Plus |
