Clone BO07868 Report

Search the DGRC for BO07868

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:78
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG1441-RA
Protein status:BO07868.pep: validated full length
Sequenced Size:1585

Clone Sequence Records

BO07868.3prime Sequence

918 bp (842 high quality bases) assembled on 2006-01-06

> BO07868.3prime
ATGGTCTAGAAAGCTTGCGCCCGCGAAGAAACACCTATAGAGCATGTAGA
GGATGCCGAAGATCCAGATGCCCTTGTAGACCTTGTCCACCACCCACATC
ACCTTCATGTGCCTCCTTGCGGCCGGAATCGATTCGTCTGACTCCTTGAG
GATCAGTCGTCGGGCGCAGAGCACACAGTTGGTGAAGTAGTCGATAAGGT
CCAGCTCGATCTTCTCGATCACGTAGGTGCGCCGTTCCTTGTTGTTCATC
AGCTTGCGCAGCTTCACCGCCTCCGAGTTGTCAAAGTTCCAAACGTTGTT
GGCATAGTACTCGAATACTTCGAATCCCTTGTAGATGCGGTTTTGAACGC
GGCACAATACCGGCGGATAGCGAAGTATCCAGAGCAGAGCGTCCACAAAG
AGAGCAGGCATCCACTGGAAGAGGACCATGCAGATGAAGTGCACCCAATA
GTTGGACTTCATCGAACCACCTGGATACCAAGCTACGCCGTTAAGTGGCA
CCTTGTTCTCAATCACCCAGCGACCCAGCTCGATGATCTCCGCCCAGGAC
ACTTTGATGTCGTTGGACGAGGTCATGTGTGCAACCCGATTGGTCTTATC
TGTGCCCGCTGTGATGTTCCTCCAGCTGGCCACTAGTATACCGTTAACAG
CCACATCCACTGGCAGGAAATCGCCGTAGCCGGAGGAATTGCAGTACATG
GTGCGGATGACACCCTTTCCGGCTCCGATAAGCAGGCCGGTGGGTCCGTT
GATGTTGTCCGTCCAGCCGGGAATGGGCTCCTTCCAGATGGGTATGACGA
TCGAGGGGCGCAGGATTACGGCGGGAAGCTCTTCGAACTTCTCCACACCA
GCGCCTCAGCCAGTGACTTGGTGTAGGCATACGTGTTTGGGATAGCCCCG
AGCACCTTGCGCTCGATG

BO07868.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG1441-PA 1554 CG1441-RA 724..1551 846..19 4140 100 Minus
CG1441-PB 1554 CG1441-RB 724..1551 846..19 4140 100 Minus
CG1441-PA 1554 CG1441-RA 651..723 918..846 365 100 Minus
CG1441-PB 1554 CG1441-RB 651..723 918..846 365 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG1441-RB 1863 CG1441-RB 783..1683 918..19 4480 99.9 Minus
CG1441-RA 1866 CG1441-RA 786..1686 918..19 4480 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:03:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9899349..9900168 100..918 4050 99.9 Plus
2R 25286936 2R 9899198..9899279 19..100 410 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:03:13 has no hits.

BO07868.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:26 Download gff for BO07868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1441-PA 651..1554 15..918 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:04 Download gff for BO07868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1441-PB 651..1554 15..918 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:46:42 Download gff for BO07868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1441-RA 786..1689 15..918 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:54:17 Download gff for BO07868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1441-RA 786..1689 15..918 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:54:17 Download gff for BO07868.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9899194..9899279 15..100 97 <- Plus
2R 9899350..9900168 101..918 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:46:42 Download gff for BO07868.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5786699..5786784 15..100 97 <- Plus
arm_2R 5786855..5787673 101..918 99   Plus

BO07868.5prime Sequence

826 bp (812 high quality bases) assembled on 2006-01-06

> BO07868.5prime
GAAGTTATCAGTCGACATGACCGCCAAGCCGAAGTTTGTGTATGAGAAGG
ATGACCGGGGCACCATTGGGGAGATAGACGACAACGAGGTGGACCGCATT
GCGGAGTGCTTCAAGGGTCGCAGTCTGTTCATCACAGGAGGCACTGGGTT
CCTGGGCAAGGTCCTGGTCGAGAAGTTGCTGCGTTCGTGCGGTGGCCTAA
AGCGCATTTATCTGCTCATCCGCCCTAAGAAGGGCAAGGATCCTCAGGAG
CGCATCAAGGATATATTCCAGAATGTGCTTTTCGACCAAGTGAAGCAGAT
GCGTGGCGAGGAGCACATCCTGCAGCAAGTGGTGGCCATTGCCGGCGACG
TCCTTTCGCCAGGCCTGGGAATCTCCGAGAAAGATCTGGAAACTCTGCGC
CAGGAGGTGTCCATTGTGTACCATTGTGCAGCTACAGTGCGCTTTGATGA
ACCCCTACGAAATGCCGTGTTCATGAACACCCGCGGCACCAAGTACATGC
TGGAGCTGGCTCTGACGTTGAAGCACCTGGACTTCTTCGCCTACTGCTCG
ACGGCGTACTGCCACCTGCACGTTAAGACGCTGTACGAGAAGCCCTACGA
TCCACCAGCAGATCCGCACAAGGTGATGCAGGCATGCGAGTGGCTGACGG
ACGACGAGGTGGCCACCATCGAGCGCAAGGTGCTCGGGGCTATCCCAAAC
ACGTATGCCTACACCAAGTCACTGGCTGAGGCGCTGGTGGTGGAGAAGTT
CGAAGAGCTTCCCGCCGTAATCCTGCGCCCCTCGATCGTCATACCCATCT
GGAAGGAGCCCATTCTCGGCTGGACG

BO07868.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1441-PA 1554 CG1441-RA 1..810 17..826 4025 99.8 Plus
CG1441-PB 1554 CG1441-RB 1..810 17..826 4025 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:37:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG1441-RB 1863 CG1441-RB 133..942 17..826 4035 99.9 Plus
CG1441-RA 1866 CG1441-RA 136..945 17..826 4035 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9900009..9900394 826..441 1915 99.7 Minus
2R 25286936 2R 9900976..9901142 183..17 835 100 Minus
2R 25286936 2R 9900513..9900677 441..277 825 100 Minus
2R 25286936 2R 9900776..9900870 277..183 475 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:37:28 has no hits.

BO07868.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:27 Download gff for BO07868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1441-PA 1..810 17..826 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:05 Download gff for BO07868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1441-PB 1..810 17..826 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:05:23 Download gff for BO07868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1441-RA 133..945 14..826 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:52:08 Download gff for BO07868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1441-RA 133..945 14..826 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:52:08 Download gff for BO07868.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9900009..9900393 442..826 99 <- Minus
2R 9900513..9900676 278..441 100 <- Minus
2R 9900776..9900869 184..277 100 <- Minus
2R 9900976..9901145 14..183 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:05:23 Download gff for BO07868.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5787514..5787898 442..826 99 <- Minus
arm_2R 5788018..5788181 278..441 100 <- Minus
arm_2R 5788281..5788374 184..277 100 <- Minus
arm_2R 5788481..5788650 14..183 99   Minus

BO07868.complete Sequence

1585 bp (1585 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630972

> BO07868.complete
GAAGTTATCAGTCGACATGACCGCCAAGCCGAAGTTTGTGTATGAGAAGG
ATGACCGGGGCACCATTGGGGAGATAGACGACAACGAGGTGGACCGCATT
GCGGAGTGCTTCAAGGGTCGCAGTCTGTTCATCACAGGAGGCACTGGGTT
CCTGGGCAAGGTCCTGGTCGAGAAGTTGCTGCGTTCGTGCGGTGGCCTAA
AGCGCATTTATCTGCTCATCCGCCCTAAGAAGGGCAAGGATCCTCAGGAG
CGCATCAAGGATATATTCCAGAATGTGCTTTTCGACCAAGTGAAGCAGAT
GCGTGGCGAGGAGCACATCCTGCAGCAAGTGGTGGCCATTGCCGGCGACG
TCCTTTCGCCAGGCCTGGGAATCTCCGAGAAAGATCTGGAAACTCTGCGC
CAGGAGGTGTCCATTGTGTACCATTGTGCAGCTACAGTGCGCTTTGATGA
ACCCCTACGAAATGCCGTGTTCATGAACACCCGCGGCACCAAGTACATGC
TGGAGCTGGCTCTGACGTTGAAGCACCTGGACTTCTTCGCCTACTGCTCG
ACGGCGTACTGCCACCTGCACGTTAAGACGCTGTACGAGAAGCCCTACGA
TCCACCAGCAGATCCGCACAAGGTGATGCAGGCATGCGAGTGGCTGACGG
ACGACGAGGTGGCCACCATCGAGCGCAAGGTGCTCGGGGCTATCCCAAAC
ACGTATGCCTACACCAAGTCACTGGCTGAGGCGCTGGTGGTGGAGAAGTT
CGAAGAGCTTCCCGCCGTAATCCTGCGCCCCTCGATCGTCATACCCATCT
GGAAGGAGCCCATTCCCGGCTGGACGGACAACATCAACGGACCCACCGGC
CTGCTTATCGGAGCCGGAAAGGGTGTCATCCGCACCATGTACTGCAATTC
CTCCGGCTACGGCGATTTCCTGCCAGTGGATGTGGCTGTTAACGGTATAC
TAGTGGCCAGCTGGAGGAACATCACAGCGGGCACAGATAAGACCAATCGG
GTTGCACACATGACCTCGTCCAACGACATCAAAGTGTCCTGGGCGGAGAT
CATCGAGCTGGGTCGCTGGGTGATTGAGAACAAGGTGCCACTTAACGGCG
TAGCTTGGTATCCAGGTGGTTCGATGAAGTCCAACTATTGGGTGCACTTC
ATCTGCATGGTCCTCTTCCAGTGGATGCCTGCTCTCTTTGTGGACGCTCT
GCTCTGGATACTTCGCTATCCGCCGGTATTGTGCCGCGTTCAAAACCGCA
TCTACAAGGGATTCGAAGTATTCGAGTACTATGCCAACAACGTTTGGAAC
TTTGACAACTCGGAGGCGGTGAAGCTGCGCAAGCTGATGAACAACAAGGA
ACGGCGCACCTACGTGATCGAGAAGATCGAGCTGGACCTTATCGACTACT
TCACCAACTGTGTGCTCTGCGCCCGACGACTGATCCTCAAGGAGTCAGAC
GAATCGATTCCGGCCGCAAGGAGGCACATGAAGGTGATGTGGGTGGTGGA
CAAGGTCTACAAGGGCATCTGGATCTTCGGCATCCTCTACATGCTCTATA
GGTGTTTCTTCGCGGGCGCAAGCTTTCTAGACCAT

BO07868.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG1441-RB 1554 CG1441-PB 1..1551 17..1567 7755 100 Plus
CG1441-RA 1554 CG1441-PA 1..1551 17..1567 7755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG1441-RB 1863 CG1441-RB 133..1683 17..1567 7755 100 Plus
CG1441-RA 1866 CG1441-RA 136..1686 17..1567 7755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9899349..9900394 1486..441 5230 100 Minus
2R 25286936 2R 9900976..9901142 183..17 835 100 Minus
2R 25286936 2R 9900513..9900677 441..277 825 100 Minus
2R 25286936 2R 9900776..9900870 277..183 475 100 Minus
2R 25286936 2R 9899198..9899279 1567..1486 410 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:44:42 has no hits.

BO07868.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:14 Download gff for BO07868.complete
Subject Subject Range Query Range Percent Splice Strand
CG1441-RB 1..1554 17..1571 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:39 Download gff for BO07868.complete
Subject Subject Range Query Range Percent Splice Strand
CG1441-RB 29..1585 14..1571 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:43 Download gff for BO07868.complete
Subject Subject Range Query Range Percent Splice Strand
CG1441-RA 136..1686 17..1569 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:15 Download gff for BO07868.complete
Subject Subject Range Query Range Percent Splice Strand
CG1441-RB 29..1585 14..1571 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:52 Download gff for BO07868.complete
Subject Subject Range Query Range Percent Splice Strand
CG1441-RA 136..1686 17..1569 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:52 Download gff for BO07868.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9899196..9899279 1486..1569 97 <- Minus
2R 9899350..9900393 442..1485 100 <- Minus
2R 9900513..9900676 278..441 100 <- Minus
2R 9900776..9900869 184..277 100 <- Minus
2R 9900976..9901142 17..183 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:43 Download gff for BO07868.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5788481..5788647 17..183 100   Minus
arm_2R 5786701..5786784 1486..1569 97 <- Minus
arm_2R 5786855..5787898 442..1485 100 <- Minus
arm_2R 5788018..5788181 278..441 100 <- Minus
arm_2R 5788281..5788374 184..277 100 <- Minus

BO07868.pep Sequence

Translation from 16 to 1585

> BO07868.pep
MTAKPKFVYEKDDRGTIGEIDDNEVDRIAECFKGRSLFITGGTGFLGKVL
VEKLLRSCGGLKRIYLLIRPKKGKDPQERIKDIFQNVLFDQVKQMRGEEH
ILQQVVAIAGDVLSPGLGISEKDLETLRQEVSIVYHCAATVRFDEPLRNA
VFMNTRGTKYMLELALTLKHLDFFAYCSTAYCHLHVKTLYEKPYDPPADP
HKVMQACEWLTDDEVATIERKVLGAIPNTYAYTKSLAEALVVEKFEELPA
VILRPSIVIPIWKEPIPGWTDNINGPTGLLIGAGKGVIRTMYCNSSGYGD
FLPVDVAVNGILVASWRNITAGTDKTNRVAHMTSSNDIKVSWAEIIELGR
WVIENKVPLNGVAWYPGGSMKSNYWVHFICMVLFQWMPALFVDALLWILR
YPPVLCRVQNRIYKGFEVFEYYANNVWNFDNSEAVKLRKLMNNKERRTYV
IEKIELDLIDYFTNCVLCARRLILKESDESIPAARRHMKVMWVVDKVYKG
IWIFGILYMLYRCFFAGASFLDH

BO07868.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG1441-PB 517 CG1441-PB 1..517 1..517 2751 100 Plus
CG1441-PA 517 CG1441-PA 1..517 1..517 2751 100 Plus
CG30427-PG 506 CG30427-PG 4..486 24..508 926 37.9 Plus
CG30427-PC 506 CG30427-PC 4..486 24..508 926 37.9 Plus
CG12268-PC 531 CG12268-PC 7..488 19..499 921 38.3 Plus