Clone Sequence Records
BO07868.3prime Sequence
918 bp (842 high quality bases) assembled on 2006-01-06
> BO07868.3prime
ATGGTCTAGAAAGCTTGCGCCCGCGAAGAAACACCTATAGAGCATGTAGA
GGATGCCGAAGATCCAGATGCCCTTGTAGACCTTGTCCACCACCCACATC
ACCTTCATGTGCCTCCTTGCGGCCGGAATCGATTCGTCTGACTCCTTGAG
GATCAGTCGTCGGGCGCAGAGCACACAGTTGGTGAAGTAGTCGATAAGGT
CCAGCTCGATCTTCTCGATCACGTAGGTGCGCCGTTCCTTGTTGTTCATC
AGCTTGCGCAGCTTCACCGCCTCCGAGTTGTCAAAGTTCCAAACGTTGTT
GGCATAGTACTCGAATACTTCGAATCCCTTGTAGATGCGGTTTTGAACGC
GGCACAATACCGGCGGATAGCGAAGTATCCAGAGCAGAGCGTCCACAAAG
AGAGCAGGCATCCACTGGAAGAGGACCATGCAGATGAAGTGCACCCAATA
GTTGGACTTCATCGAACCACCTGGATACCAAGCTACGCCGTTAAGTGGCA
CCTTGTTCTCAATCACCCAGCGACCCAGCTCGATGATCTCCGCCCAGGAC
ACTTTGATGTCGTTGGACGAGGTCATGTGTGCAACCCGATTGGTCTTATC
TGTGCCCGCTGTGATGTTCCTCCAGCTGGCCACTAGTATACCGTTAACAG
CCACATCCACTGGCAGGAAATCGCCGTAGCCGGAGGAATTGCAGTACATG
GTGCGGATGACACCCTTTCCGGCTCCGATAAGCAGGCCGGTGGGTCCGTT
GATGTTGTCCGTCCAGCCGGGAATGGGCTCCTTCCAGATGGGTATGACGA
TCGAGGGGCGCAGGATTACGGCGGGAAGCTCTTCGAACTTCTCCACACCA
GCGCCTCAGCCAGTGACTTGGTGTAGGCATACGTGTTTGGGATAGCCCCG
AGCACCTTGCGCTCGATG
BO07868.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1441-PA | 1554 | CG1441-RA | 724..1551 | 846..19 | 4140 | 100 | Minus |
CG1441-PB | 1554 | CG1441-RB | 724..1551 | 846..19 | 4140 | 100 | Minus |
CG1441-PA | 1554 | CG1441-RA | 651..723 | 918..846 | 365 | 100 | Minus |
CG1441-PB | 1554 | CG1441-RB | 651..723 | 918..846 | 365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:03:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1441-RB | 1863 | CG1441-RB | 783..1683 | 918..19 | 4480 | 99.9 | Minus |
CG1441-RA | 1866 | CG1441-RA | 786..1686 | 918..19 | 4480 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:03:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9899349..9900168 | 100..918 | 4050 | 99.9 | Plus |
2R | 25286936 | 2R | 9899198..9899279 | 19..100 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:03:13 has no hits.
BO07868.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:26 Download gff for
BO07868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1441-PA | 651..1554 | 15..918 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:04 Download gff for
BO07868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1441-PB | 651..1554 | 15..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:46:42 Download gff for
BO07868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1441-RA | 786..1689 | 15..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:54:17 Download gff for
BO07868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1441-RA | 786..1689 | 15..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:54:17 Download gff for
BO07868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9899194..9899279 | 15..100 | 97 | <- | Plus |
2R | 9899350..9900168 | 101..918 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:46:42 Download gff for
BO07868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5786699..5786784 | 15..100 | 97 | <- | Plus |
arm_2R | 5786855..5787673 | 101..918 | 99 | | Plus |
BO07868.5prime Sequence
826 bp (812 high quality bases) assembled on 2006-01-06
> BO07868.5prime
GAAGTTATCAGTCGACATGACCGCCAAGCCGAAGTTTGTGTATGAGAAGG
ATGACCGGGGCACCATTGGGGAGATAGACGACAACGAGGTGGACCGCATT
GCGGAGTGCTTCAAGGGTCGCAGTCTGTTCATCACAGGAGGCACTGGGTT
CCTGGGCAAGGTCCTGGTCGAGAAGTTGCTGCGTTCGTGCGGTGGCCTAA
AGCGCATTTATCTGCTCATCCGCCCTAAGAAGGGCAAGGATCCTCAGGAG
CGCATCAAGGATATATTCCAGAATGTGCTTTTCGACCAAGTGAAGCAGAT
GCGTGGCGAGGAGCACATCCTGCAGCAAGTGGTGGCCATTGCCGGCGACG
TCCTTTCGCCAGGCCTGGGAATCTCCGAGAAAGATCTGGAAACTCTGCGC
CAGGAGGTGTCCATTGTGTACCATTGTGCAGCTACAGTGCGCTTTGATGA
ACCCCTACGAAATGCCGTGTTCATGAACACCCGCGGCACCAAGTACATGC
TGGAGCTGGCTCTGACGTTGAAGCACCTGGACTTCTTCGCCTACTGCTCG
ACGGCGTACTGCCACCTGCACGTTAAGACGCTGTACGAGAAGCCCTACGA
TCCACCAGCAGATCCGCACAAGGTGATGCAGGCATGCGAGTGGCTGACGG
ACGACGAGGTGGCCACCATCGAGCGCAAGGTGCTCGGGGCTATCCCAAAC
ACGTATGCCTACACCAAGTCACTGGCTGAGGCGCTGGTGGTGGAGAAGTT
CGAAGAGCTTCCCGCCGTAATCCTGCGCCCCTCGATCGTCATACCCATCT
GGAAGGAGCCCATTCTCGGCTGGACG
BO07868.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1441-PA | 1554 | CG1441-RA | 1..810 | 17..826 | 4025 | 99.8 | Plus |
CG1441-PB | 1554 | CG1441-RB | 1..810 | 17..826 | 4025 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:37:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1441-RB | 1863 | CG1441-RB | 133..942 | 17..826 | 4035 | 99.9 | Plus |
CG1441-RA | 1866 | CG1441-RA | 136..945 | 17..826 | 4035 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:37:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9900009..9900394 | 826..441 | 1915 | 99.7 | Minus |
2R | 25286936 | 2R | 9900976..9901142 | 183..17 | 835 | 100 | Minus |
2R | 25286936 | 2R | 9900513..9900677 | 441..277 | 825 | 100 | Minus |
2R | 25286936 | 2R | 9900776..9900870 | 277..183 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:37:28 has no hits.
BO07868.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:27 Download gff for
BO07868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1441-PA | 1..810 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:05 Download gff for
BO07868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1441-PB | 1..810 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:05:23 Download gff for
BO07868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1441-RA | 133..945 | 14..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:52:08 Download gff for
BO07868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1441-RA | 133..945 | 14..826 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:52:08 Download gff for
BO07868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9900009..9900393 | 442..826 | 99 | <- | Minus |
2R | 9900513..9900676 | 278..441 | 100 | <- | Minus |
2R | 9900776..9900869 | 184..277 | 100 | <- | Minus |
2R | 9900976..9901145 | 14..183 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:05:23 Download gff for
BO07868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5787514..5787898 | 442..826 | 99 | <- | Minus |
arm_2R | 5788018..5788181 | 278..441 | 100 | <- | Minus |
arm_2R | 5788281..5788374 | 184..277 | 100 | <- | Minus |
arm_2R | 5788481..5788650 | 14..183 | 99 | | Minus |
BO07868.complete Sequence
1585 bp (1585 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630972
> BO07868.complete
GAAGTTATCAGTCGACATGACCGCCAAGCCGAAGTTTGTGTATGAGAAGG
ATGACCGGGGCACCATTGGGGAGATAGACGACAACGAGGTGGACCGCATT
GCGGAGTGCTTCAAGGGTCGCAGTCTGTTCATCACAGGAGGCACTGGGTT
CCTGGGCAAGGTCCTGGTCGAGAAGTTGCTGCGTTCGTGCGGTGGCCTAA
AGCGCATTTATCTGCTCATCCGCCCTAAGAAGGGCAAGGATCCTCAGGAG
CGCATCAAGGATATATTCCAGAATGTGCTTTTCGACCAAGTGAAGCAGAT
GCGTGGCGAGGAGCACATCCTGCAGCAAGTGGTGGCCATTGCCGGCGACG
TCCTTTCGCCAGGCCTGGGAATCTCCGAGAAAGATCTGGAAACTCTGCGC
CAGGAGGTGTCCATTGTGTACCATTGTGCAGCTACAGTGCGCTTTGATGA
ACCCCTACGAAATGCCGTGTTCATGAACACCCGCGGCACCAAGTACATGC
TGGAGCTGGCTCTGACGTTGAAGCACCTGGACTTCTTCGCCTACTGCTCG
ACGGCGTACTGCCACCTGCACGTTAAGACGCTGTACGAGAAGCCCTACGA
TCCACCAGCAGATCCGCACAAGGTGATGCAGGCATGCGAGTGGCTGACGG
ACGACGAGGTGGCCACCATCGAGCGCAAGGTGCTCGGGGCTATCCCAAAC
ACGTATGCCTACACCAAGTCACTGGCTGAGGCGCTGGTGGTGGAGAAGTT
CGAAGAGCTTCCCGCCGTAATCCTGCGCCCCTCGATCGTCATACCCATCT
GGAAGGAGCCCATTCCCGGCTGGACGGACAACATCAACGGACCCACCGGC
CTGCTTATCGGAGCCGGAAAGGGTGTCATCCGCACCATGTACTGCAATTC
CTCCGGCTACGGCGATTTCCTGCCAGTGGATGTGGCTGTTAACGGTATAC
TAGTGGCCAGCTGGAGGAACATCACAGCGGGCACAGATAAGACCAATCGG
GTTGCACACATGACCTCGTCCAACGACATCAAAGTGTCCTGGGCGGAGAT
CATCGAGCTGGGTCGCTGGGTGATTGAGAACAAGGTGCCACTTAACGGCG
TAGCTTGGTATCCAGGTGGTTCGATGAAGTCCAACTATTGGGTGCACTTC
ATCTGCATGGTCCTCTTCCAGTGGATGCCTGCTCTCTTTGTGGACGCTCT
GCTCTGGATACTTCGCTATCCGCCGGTATTGTGCCGCGTTCAAAACCGCA
TCTACAAGGGATTCGAAGTATTCGAGTACTATGCCAACAACGTTTGGAAC
TTTGACAACTCGGAGGCGGTGAAGCTGCGCAAGCTGATGAACAACAAGGA
ACGGCGCACCTACGTGATCGAGAAGATCGAGCTGGACCTTATCGACTACT
TCACCAACTGTGTGCTCTGCGCCCGACGACTGATCCTCAAGGAGTCAGAC
GAATCGATTCCGGCCGCAAGGAGGCACATGAAGGTGATGTGGGTGGTGGA
CAAGGTCTACAAGGGCATCTGGATCTTCGGCATCCTCTACATGCTCTATA
GGTGTTTCTTCGCGGGCGCAAGCTTTCTAGACCAT
BO07868.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:44:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1441-RB | 1554 | CG1441-PB | 1..1551 | 17..1567 | 7755 | 100 | Plus |
CG1441-RA | 1554 | CG1441-PA | 1..1551 | 17..1567 | 7755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:44:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1441-RB | 1863 | CG1441-RB | 133..1683 | 17..1567 | 7755 | 100 | Plus |
CG1441-RA | 1866 | CG1441-RA | 136..1686 | 17..1567 | 7755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:44:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9899349..9900394 | 1486..441 | 5230 | 100 | Minus |
2R | 25286936 | 2R | 9900976..9901142 | 183..17 | 835 | 100 | Minus |
2R | 25286936 | 2R | 9900513..9900677 | 441..277 | 825 | 100 | Minus |
2R | 25286936 | 2R | 9900776..9900870 | 277..183 | 475 | 100 | Minus |
2R | 25286936 | 2R | 9899198..9899279 | 1567..1486 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:44:42 has no hits.
BO07868.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:14 Download gff for
BO07868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1441-RB | 1..1554 | 17..1571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:39 Download gff for
BO07868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1441-RB | 29..1585 | 14..1571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:43 Download gff for
BO07868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1441-RA | 136..1686 | 17..1569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:15 Download gff for
BO07868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1441-RB | 29..1585 | 14..1571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:52 Download gff for
BO07868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1441-RA | 136..1686 | 17..1569 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:52 Download gff for
BO07868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9899196..9899279 | 1486..1569 | 97 | <- | Minus |
2R | 9899350..9900393 | 442..1485 | 100 | <- | Minus |
2R | 9900513..9900676 | 278..441 | 100 | <- | Minus |
2R | 9900776..9900869 | 184..277 | 100 | <- | Minus |
2R | 9900976..9901142 | 17..183 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:43 Download gff for
BO07868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5788481..5788647 | 17..183 | 100 | | Minus |
arm_2R | 5786701..5786784 | 1486..1569 | 97 | <- | Minus |
arm_2R | 5786855..5787898 | 442..1485 | 100 | <- | Minus |
arm_2R | 5788018..5788181 | 278..441 | 100 | <- | Minus |
arm_2R | 5788281..5788374 | 184..277 | 100 | <- | Minus |
BO07868.pep Sequence
Translation from 16 to 1585
> BO07868.pep
MTAKPKFVYEKDDRGTIGEIDDNEVDRIAECFKGRSLFITGGTGFLGKVL
VEKLLRSCGGLKRIYLLIRPKKGKDPQERIKDIFQNVLFDQVKQMRGEEH
ILQQVVAIAGDVLSPGLGISEKDLETLRQEVSIVYHCAATVRFDEPLRNA
VFMNTRGTKYMLELALTLKHLDFFAYCSTAYCHLHVKTLYEKPYDPPADP
HKVMQACEWLTDDEVATIERKVLGAIPNTYAYTKSLAEALVVEKFEELPA
VILRPSIVIPIWKEPIPGWTDNINGPTGLLIGAGKGVIRTMYCNSSGYGD
FLPVDVAVNGILVASWRNITAGTDKTNRVAHMTSSNDIKVSWAEIIELGR
WVIENKVPLNGVAWYPGGSMKSNYWVHFICMVLFQWMPALFVDALLWILR
YPPVLCRVQNRIYKGFEVFEYYANNVWNFDNSEAVKLRKLMNNKERRTYV
IEKIELDLIDYFTNCVLCARRLILKESDESIPAARRHMKVMWVVDKVYKG
IWIFGILYMLYRCFFAGASFLDH
BO07868.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:49:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1441-PB | 517 | CG1441-PB | 1..517 | 1..517 | 2751 | 100 | Plus |
CG1441-PA | 517 | CG1441-PA | 1..517 | 1..517 | 2751 | 100 | Plus |
CG30427-PG | 506 | CG30427-PG | 4..486 | 24..508 | 926 | 37.9 | Plus |
CG30427-PC | 506 | CG30427-PC | 4..486 | 24..508 | 926 | 37.9 | Plus |
CG12268-PC | 531 | CG12268-PC | 7..488 | 19..499 | 921 | 38.3 | Plus |