Clone Sequence Records
BO07870.3prime Sequence
912 bp (826 high quality bases) assembled on 2006-01-06
> BO07870.3prime
ATGGTCTAGAAAGCTTGCGTAGGCGGGCGACAACATGGGCTCCCCAGCCA
AACCGCGGAGCACATTATGGGCAGCAATGGTGGACATGTCGGCACGGGTG
CGCTTCGTGGCGGATCCAATATGGGGCAGGACAACAACATTGTCAAGCGT
CAGCAGCTTGTCCTTGGGCGACAATGGTTCCGGATCCGTGACGTCGAGTC
CGGCGGAAAAGATTCGGTTGGCTTTCAAAGCCTCGTAGAGGTCATCCTGG
TTGACGATTTTGCCCCTGGCAATGTTAACCAGCACAGCAGTCTGCTTCAT
CTTGTTGAAGGCGGTGGCATTAAAGACGCCCTGTGTGTCCTTCGTCAAAG
GAGAAGCGATCACTACGAAGTCACTCTCGGCCAGAAGGGTATCGAAGTCA
ACTTTCTTGGCATTGAACTCCTCCTCGATCTCCTTGTGAACACGACGACG
GGTGGTGTACAGCACCTTGTCAATGTCGAATCCAGACAAACGCTTGGCAA
TAGCCTGACCAATGCCTCCAAAGCCGTAGAATCCCACGGTGGAATCACGA
ATATCCTGGCCCAACAGCCAGTTAAGATGGTAGTTTTCCCACTTGTCATT
GTCGATGGTCTTGCGACCCTCGTGAAAACGGCGACTGGCGGCGATCAGGA
GACCCACTGCCAAATCGGCCACGGCGGTGTTGAGAACGGTGGGCGTGTGT
CCCAGCGGGATCTTACGTCTCTTTACCTCCGGCACATCGACGTAGTCGAT
TCCCGCCGACATGGTGGAGATGGATTTCAGCTGGGGACCGGCAGCATCGA
GGGCCTCGGCATTGAGGGGTTCGTGTCCACCCCAGAGAACGCCATCCACG
CCACGGATTTTCTCCAGCAGCTCCGCCCGGTTGATGGGACACTCTGCACC
TGGACGATCTCG
BO07870.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9331-PD | 981 | CG9331-RD | 108..978 | 889..19 | 4355 | 100 | Minus |
| CG9331-PC | 1095 | CG9331-RC | 222..1092 | 889..19 | 4355 | 100 | Minus |
| CG9331-PE | 1101 | CG9331-RE | 228..1098 | 889..19 | 4355 | 100 | Minus |
| CG9331-PB | 981 | CG9331-RB | 108..978 | 889..19 | 4355 | 100 | Minus |
| CG9331-PA | 1095 | CG9331-RA | 222..1092 | 889..19 | 4355 | 100 | Minus |
| CG31674-PA | 984 | CG31674-RA | 419..497 | 581..503 | 220 | 91.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:03:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9331-RL | 1346 | CG9331-RL | 340..1234 | 912..19 | 4450 | 99.9 | Minus |
| CG9331-RK | 1512 | CG9331-RK | 486..1380 | 912..19 | 4450 | 99.9 | Minus |
| CG9331-RJ | 1309 | CG9331-RJ | 303..1197 | 912..19 | 4450 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:03:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20826633..20826970 | 598..261 | 1690 | 100 | Minus |
| 2L | 23513712 | 2L | 20825773..20826087 | 912..599 | 1525 | 99.7 | Minus |
| 2L | 23513712 | 2L | 20827032..20827157 | 260..135 | 630 | 100 | Minus |
| 2L | 23513712 | 2L | 20827496..20827612 | 135..19 | 585 | 100 | Minus |
| 2L | 23513712 | 2L | 20831946..20832287 | 602..261 | 570 | 77.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:03:27 has no hits.
BO07870.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:30 Download gff for
BO07870.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-PE | 204..1101 | 18..912 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:09 Download gff for
BO07870.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-PA | 198..1095 | 18..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:46:44 Download gff for
BO07870.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RJ | 303..1197 | 19..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:55:01 Download gff for
BO07870.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RJ | 303..1197 | 19..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:55:01 Download gff for
BO07870.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20825773..20826087 | 599..912 | 99 | -> | Minus |
| 2L | 20826633..20826970 | 261..598 | 100 | -> | Minus |
| 2L | 20827032..20827157 | 135..260 | 100 | -> | Minus |
| 2L | 20827497..20827612 | 19..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:46:44 Download gff for
BO07870.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20825773..20826087 | 599..912 | 99 | -> | Minus |
| arm_2L | 20826633..20826970 | 261..598 | 100 | -> | Minus |
| arm_2L | 20827032..20827157 | 135..260 | 100 | -> | Minus |
| arm_2L | 20827497..20827612 | 19..134 | 100 | | Minus |
BO07870.5prime Sequence
903 bp (782 high quality bases) assembled on 2006-01-06
> BO07870.5prime
GAAGTTATCAGTCGACATGCTAAACAGGTTCATTGGTTTATCGGCTGCGA
TCGTGGGTCGGAGCAGTCGGATCAGCGGCTTTCCGTTCTCGCCGCTCCTT
AAAGCTGGAAATCAAAGCCAGAATCGCACCATGTCCGCTGGCAAGGCTTT
CAAGGTCCTGGTGACACATCCCGAGGTTCCCCAGGAGGGCATTGATCTGC
TGAAGGAGAACTGCGAGATCGTCCAGGTGCAGAGTGTTCCCATCAACCGG
GCGGAGCTGCTGGAGAAAATCCGTGGCGTGGATGGCGTTCTCTGGGGTGG
ACACGAACCCCTCAATGCCGAGGCCCTCGATGCTGCCGGTCCCCAGCTGA
AATCCATCTCCACCATGTCGGCGGGAATCGACTACGTCGATGTGCCGGAG
GTAAAGAGACGTAAGATCCCGCTGGGACACACGCCCACCGTTCTCAACAC
CGCCGTGGCCGATTTGGCAGTGGGTCTCCTGATCGCCGCCAGTCGCCGTT
TTCACGAGGGTCGCAAGACCATCGACAATGACAAGTGGGAAAACTACCAT
CTTAACTGGCTGTTGGGCCAGGATATTCGTGATTCCACCGTGGGATTCTA
CGGCTTTGGAGGCATTGGTCAGGCTATTGCCAAGCGTTTGTCTGGATTCG
ACATTGACAAGGTGCTGTACACCACCCGTCGTCGTGTTCACAAGGAGATC
GAGGAGGAGTTCAATGCCAAGAAAGTTGACTTCGATACCCTTCTGGCCGA
GAGTGACTTCGTAGTGATCGCTTCTCCTTTGACGAAAGACACACAGGGCG
TCTTTAATGCCACCGCCTTCAACAAGATGAAGCAGACTGCTGTGCTGGTT
AACATTGCCAGGGGCAAATCGTCAACCAGGATGACCTCTACGAGGCTTTG
AAA
BO07870.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9331-PC | 1095 | CG9331-RC | 1..852 | 17..868 | 4235 | 99.8 | Plus |
| CG9331-PA | 1095 | CG9331-RA | 92..852 | 108..868 | 3780 | 99.8 | Plus |
| CG9331-PE | 1101 | CG9331-RE | 99..858 | 109..868 | 3775 | 99.8 | Plus |
| CG9331-PD | 981 | CG9331-RD | 1..738 | 131..868 | 3665 | 99.8 | Plus |
| CG9331-PB | 981 | CG9331-RB | 1..738 | 131..868 | 3665 | 99.8 | Plus |
| CG31674-PA | 984 | CG31674-RA | 419..497 | 546..624 | 220 | 91.1 | Plus |
| CG9331-PC | 1095 | CG9331-RC | 851..888 | 866..903 | 190 | 100 | Plus |
| CG9331-PA | 1095 | CG9331-RA | 851..888 | 866..903 | 190 | 100 | Plus |
| CG9331-PE | 1101 | CG9331-RE | 857..894 | 866..903 | 190 | 100 | Plus |
| CG9331-PD | 981 | CG9331-RD | 737..774 | 866..903 | 190 | 100 | Plus |
| CG9331-PB | 981 | CG9331-RB | 737..774 | 866..903 | 190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:34:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9331-RI | 1550 | CG9331-RI | 347..1234 | 17..903 | 4400 | 99.8 | Plus |
| CG9331-RH | 1413 | CG9331-RH | 210..1097 | 17..903 | 4400 | 99.8 | Plus |
| CG9331-RM | 1827 | CG9331-RM | 624..1511 | 17..903 | 4400 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:34:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20825667..20826087 | 108..528 | 2105 | 100 | Plus |
| 2L | 23513712 | 2L | 20826633..20826970 | 529..866 | 1675 | 99.7 | Plus |
| 2L | 23513712 | 2L | 20831946..20832287 | 525..866 | 555 | 77.5 | Plus |
| 2L | 23513712 | 2L | 20825421..20825512 | 17..108 | 460 | 100 | Plus |
| 2L | 23513712 | 2L | 20827032..20827069 | 866..903 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:34:19 has no hits.
BO07870.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:31 Download gff for
BO07870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-PC | 1..885 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:10 Download gff for
BO07870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-PC | 1..885 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:37:39 Download gff for
BO07870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RC | 318..1202 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:40 Download gff for
BO07870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RM | 624..1508 | 17..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:40 Download gff for
BO07870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20826633..20826970 | 529..865 | 99 | -> | Plus |
| 2L | 20827032..20827066 | 866..900 | 100 | | Plus |
| 2L | 20825421..20825512 | 17..108 | 100 | -> | Plus |
| 2L | 20825668..20826087 | 109..528 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:37:39 Download gff for
BO07870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20825421..20825512 | 17..108 | 100 | -> | Plus |
| arm_2L | 20825668..20826087 | 109..528 | 100 | -> | Plus |
| arm_2L | 20826633..20826970 | 529..865 | 99 | -> | Plus |
| arm_2L | 20827032..20827066 | 866..900 | 100 | | Plus |
BO07870.complete Sequence
1126 bp (1126 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630973
> BO07870.complete
GAAGTTATCAGTCGACATGCTAAACAGGTTCATTGGTTTATCGGCTGCGA
TCGTGGGTCGGAGCAGTCGGATCAGCGGCTTTCCGTTCTCGCCGCTCCTT
AAAGCTGGAAATCAAAGCCAGAATCGCACCATGTCCGCTGGCAAGGCTTT
CAAGGTCCTGGTGACACATCCCGAGGTTCCCCAGGAGGGCATTGATCTGC
TGAAGGAGAACTGCGAGATCGTCCAGGTGCAGAGTGTTCCCATCAACCGG
GCGGAGCTGCTGGAGAAAATCCGTGGCGTGGATGGCGTTCTCTGGGGTGG
ACACGAACCCCTCAATGCCGAGGCCCTCGATGCTGCCGGTCCCCAGCTGA
AATCCATCTCCACCATGTCGGCGGGAATCGACTACGTCGATGTGCCGGAG
GTAAAGAGACGTAAGATCCCGCTGGGACACACGCCCACCGTTCTCAACAC
CGCCGTGGCCGATTTGGCAGTGGGTCTCCTGATCGCCGCCAGTCGCCGTT
TTCACGAGGGTCGCAAGACCATCGACAATGACAAGTGGGAAAACTACCAT
CTTAACTGGCTGTTGGGCCAGGATATTCGTGATTCCACCGTGGGATTCTA
CGGCTTTGGAGGCATTGGTCAGGCTATTGCCAAGCGTTTGTCTGGATTCG
ACATTGACAAGGTGCTGTACACCACCCGTCGTCGTGTTCACAAGGAGATC
GAGGAGGAGTTCAATGCCAAGAAAGTTGACTTCGATACCCTTCTGGCCGA
GAGTGACTTCGTAGTGATCGCTTCTCCTTTGACGAAGGACACACAGGGCG
TCTTTAATGCCACCGCCTTCAACAAGATGAAGCAGACTGCTGTGCTGGTT
AACATTGCCAGGGGCAAAATCGTCAACCAGGATGACCTCTACGAGGCTTT
GAAAGCCAACCGAATCTTTTCCGCCGGACTCGACGTCACGGATCCGGAAC
CATTGTCGCCCAAGGACAAGCTGCTGACGCTTGACAATGTTGTTGTCCTG
CCCCATATTGGATCCGCCACGAAGCGCACCCGTGCCGACATGTCCACCAT
TGCTGCCCATAATGTGCTCCGCGGTTTGGCTGGGGAGCCCATGTTGTCGC
CCGCCTACGCAAGCTTTCTAGACCAT
BO07870.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:48:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9331-RI | 1095 | CG9331-PI | 1..1092 | 17..1108 | 5460 | 100 | Plus |
| CG9331-RH | 1095 | CG9331-PH | 1..1092 | 17..1108 | 5460 | 100 | Plus |
| CG9331-RM | 1095 | CG9331-PM | 1..1092 | 17..1108 | 5460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:48:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9331-RI | 1550 | CG9331-RI | 347..1438 | 17..1108 | 5460 | 100 | Plus |
| CG9331-RH | 1413 | CG9331-RH | 210..1301 | 17..1108 | 5460 | 100 | Plus |
| CG9331-RM | 1827 | CG9331-RM | 624..1715 | 17..1108 | 5460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:48:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20825667..20826087 | 108..528 | 2105 | 100 | Plus |
| 2L | 23513712 | 2L | 20826633..20826970 | 529..866 | 1690 | 100 | Plus |
| 2L | 23513712 | 2L | 20827032..20827157 | 867..992 | 630 | 100 | Plus |
| 2L | 23513712 | 2L | 20827496..20827612 | 992..1108 | 585 | 100 | Plus |
| 2L | 23513712 | 2L | 20831946..20832287 | 525..866 | 570 | 77.8 | Plus |
| 2L | 23513712 | 2L | 20825421..20825512 | 17..108 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:48:09 has no hits.
BO07870.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:45 Download gff for
BO07870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RC | 1..1095 | 17..1109 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:53 Download gff for
BO07870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RC | 316..1407 | 17..1108 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:21 Download gff for
BO07870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RC | 318..1409 | 17..1110 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:45 Download gff for
BO07870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RC | 316..1407 | 17..1108 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:18 Download gff for
BO07870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RM | 624..1715 | 17..1110 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:18 Download gff for
BO07870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20825668..20826087 | 109..528 | 100 | -> | Plus |
| 2L | 20826633..20826970 | 529..866 | 100 | -> | Plus |
| 2L | 20827032..20827157 | 867..992 | 100 | -> | Plus |
| 2L | 20825421..20825512 | 17..108 | 100 | -> | Plus |
| 2L | 20827497..20827612 | 993..1110 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:21 Download gff for
BO07870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20827497..20827612 | 993..1110 | 98 | | Plus |
| arm_2L | 20825421..20825512 | 17..108 | 100 | -> | Plus |
| arm_2L | 20825668..20826087 | 109..528 | 100 | -> | Plus |
| arm_2L | 20826633..20826970 | 529..866 | 100 | -> | Plus |
| arm_2L | 20827032..20827157 | 867..992 | 100 | -> | Plus |
BO07870.pep Sequence
Translation from 16 to 1126
> BO07870.pep
MLNRFIGLSAAIVGRSSRISGFPFSPLLKAGNQSQNRTMSAGKAFKVLVT
HPEVPQEGIDLLKENCEIVQVQSVPINRAELLEKIRGVDGVLWGGHEPLN
AEALDAAGPQLKSISTMSAGIDYVDVPEVKRRKIPLGHTPTVLNTAVADL
AVGLLIAASRRFHEGRKTIDNDKWENYHLNWLLGQDIRDSTVGFYGFGGI
GQAIAKRLSGFDIDKVLYTTRRRVHKEIEEEFNAKKVDFDTLLAESDFVV
IASPLTKDTQGVFNATAFNKMKQTAVLVNIARGKIVNQDDLYEALKANRI
FSAGLDVTDPEPLSPKDKLLTLDNVVVLPHIGSATKRTRADMSTIAAHNV
LRGLAGEPMLSPAYASFLDH
BO07870.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9331-PI | 364 | CG9331-PI | 1..364 | 1..364 | 1849 | 100 | Plus |
| CG9331-PH | 364 | CG9331-PH | 1..364 | 1..364 | 1849 | 100 | Plus |
| CG9331-PM | 364 | CG9331-PM | 1..364 | 1..364 | 1849 | 100 | Plus |
| CG9331-PC | 364 | CG9331-PC | 1..364 | 1..364 | 1849 | 100 | Plus |
| CG9331-PL | 364 | CG9331-PL | 32..364 | 32..364 | 1698 | 100 | Plus |
