Clone BO07873 Report

Search the DGRC for BO07873

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:78
Well:73
Vector:pDNR-Dual
Associated Gene/Transcripterm-RA
Protein status:BO07873.pep: full length peptide match
Sequenced Size:1867

Clone Sequence Records

BO07873.3prime Sequence

871 bp (805 high quality bases) assembled on 2006-01-06

> BO07873.3prime
ATGGTCTAGAAAGCTTGCAAACACCTTGGCTATGAAGGTCTCCGAGAGTC
TTTGCTGCTGCTGATGGTGTTGCTGGCTTTGCGGATGTGGCTGCTGCGGC
TGGAGTTGCAAGAAGGCGGAGCCACTGGGATAATCGTGAGGTGGAGCCAC
TCCGAGCTGGTGATGGAAGCCACCGGGCGGATACTGCGAAACGGCGGACC
TGGGCCAGGCGGGATTACTCGTCTCGCCGCTGGAAAGTGGCGGTGTGGTG
ACATTGATGGGCGGCGACATGCTGCCGGAACTGGAGTCCGGCGTGAGTTG
ACCCGATGCCTGGCCGTAACCGGAGGCAAGTGGCTCCCTGCGCGTGTACT
CGCGCCGCCTGTCGTAGGTGGGTGGCATGTCCAGGTCATCCAGATCGCCG
CCGATCTCGTGCAGCTTCCGCATGTGCTTCTTCAGATCGAAGTTCCGGCA
GAATCCCTTGGCGCAGACGCGGCAGGTGTAGGGCTTCTTGTCGTTGTGCG
TGTGCATGTGGAAGGTGAGGTTGTAGACCTGGTGGAAGGCCTTGTTGCAG
ATGTTGCACTTGTAGGCCTTTTCGCCGCTGTGGGTCAGCTTGTGGTTCTT
GTAGTTGCCCTTCTGGTGGAACCCCTTGCCGCAGTACTCGCACACGAAGG
GCTTGTAGCCGGCGTGGATGCGCGAGTGGGTGTTGAGGGTGGAGGAGCGA
TTGAAGGCCTTGCCGCAGGTCTGGCACTTGTGCGGCTTTTCCGACGTGTG
GATGATCTTGTGCCGGCAGAGAGTCGAAGCCTGGCGGAATCCCTTGCCGC
AGACCTTGCAAACAAACGGCCTGGCTCCGGTGTGGACGGGCATGTGGCGG
GTGAGGTTGTAGTGGGCGTTG

BO07873.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG31670-PA 1836 CG31670-RA 981..1833 871..19 4265 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:04:32
Subject Length Description Subject Range Query Range Score Percent Strand
erm-RD 2881 CG31670-RD 1209..2061 871..19 4265 100 Minus
erm-RC 2881 CG31670-RC 1209..2061 871..19 4265 100 Minus
erm-RB 3051 CG31670-RB 1379..2231 871..19 4265 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1951059..1951911 19..871 4265 100 Plus
Blast to na_te.dros performed 2015-02-13 00:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2454..2515 108..47 157 72.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..6820 109..52 155 74.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6799..6859 109..52 153 77 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6787 108..52 150 73.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6752..6808 108..52 150 73.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2363..2424 109..48 148 71 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2356 102..53 142 76 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2368 109..53 141 71.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2402..2464 109..53 139 74.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1513..1572 107..48 138 70 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6784..6845 109..48 130 67.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2798..2855 109..52 128 69 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6821..6876 108..53 127 69.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6766 96..52 126 75.6 Minus
roo 9092 roo DM_ROO 9092bp 1100..1151 102..48 124 72.7 Minus

BO07873.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:34 Download gff for BO07873.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31670-PA 981..1836 16..871 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:14 Download gff for BO07873.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31670-PA 981..1836 16..871 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:30:26 Download gff for BO07873.3prime
Subject Subject Range Query Range Percent Splice Strand
erm-RB 1379..2238 13..871 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:40:04 Download gff for BO07873.3prime
Subject Subject Range Query Range Percent Splice Strand
erm-RB 1379..2238 13..871 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:40:04 Download gff for BO07873.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1951052..1951911 13..871 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:30:26 Download gff for BO07873.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1951052..1951911 13..871 99   Plus

BO07873.5prime Sequence

920 bp (751 high quality bases) assembled on 2006-01-06

> BO07873.5prime
GAAGTTATCAGTCGACATGGTTTACTTTAGTCCGCGTGGCATGCAACCGT
GTAGTCCAGCGGGAGAAATCGCAATGATGCCGCCTTCGAAGAGCCCCGTG
ATGGAGAGCGCCGCCTCCGAACAGAATCCTGCCCAGCAGAGCCAGCAGCA
GGACGAGCAGAGCGCCAAGCGGGCGTGTCCCCTAAAGTTTTCGATAGCCA
AGATCATGGAGCCGGATCACAGGCCCAGCCAAGTGCCACCGCCGCAGCCC
GCTCCGGTTTCCTTCGCCACCAACGATGACGACGAGGATGAGGATCCGGA
GATCGATGCCGACTCGGAGCGCTCCTGCAGCCCCATCGAGGTGATCAGCC
TGGATCAGTCGCCATCCACTGTCAACTATGACTCCGCTTTCAAGAAGTAT
GTGCCGGGTCCGTGTTCGGGCGCCACTTCATCGGTGGCCTCGCCGCCGAG
CACCGCTGCTGTGCAGCAGTTTGTGAGCTCCCGCCACCAGGAGCTGCTCT
CGCAGTATCCCCTGCTGTACTATGCACCCAATCAGCTGATGTGCGCCGCT
GCTGCCGCCCAATATGCAGCCCTTACCGCCCAACAGCAATCGCTGGCCAG
CGCCGCCCACCTGAGCAGCTTCACCGCATCCCTGAATGCCAGCTTGCATC
ACTCGCAGTCGCTGAGAAGAAATCTGGGTCATCCACTGGCCGCGGCAGCT
GCCGTGGCGGCAGTGGCCCAATCCCAGGCGGTGCCCAATTTGCAACATAC
CCTGGAAAAGTCGCCAGTGGCCCAGAGAACAGCCCAGAGTTCGGGATTTG
CAGCTAACTTGAAGAGGAAACGATCGCCGCAGGATCAAGGCGAAGTGACG
CCGCCTCCAGCGTCTACTGCCACTTCCGCCACTGGAGCCAGATCCCGCTC
CCCCCTCGCCGCAGGATCCA

BO07873.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:12:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG31670-PA 1836 CG31670-RA 1..782 17..798 3910 100 Plus
CG31670-PA 1836 CG31670-RA 786..888 802..904 490 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
erm-RD 2881 CG31670-RD 229..1132 17..920 4415 99.4 Plus
erm-RC 2881 CG31670-RC 229..1132 17..920 4415 99.4 Plus
erm-RA 2881 CG31670-RA 229..1132 17..920 4415 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1952004..1952879 904..29 4320 99.5 Minus
Blast to na_te.dros performed on 2015-02-13 07:00:06 has no hits.

BO07873.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:31:35 Download gff for BO07873.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31670-PA 1..903 17..919 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:19:16 Download gff for BO07873.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31670-PA 1..903 17..919 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:08:45 Download gff for BO07873.5prime
Subject Subject Range Query Range Percent Splice Strand
erm-RA 229..1131 17..919 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:36:28 Download gff for BO07873.5prime
Subject Subject Range Query Range Percent Splice Strand
erm-RA 229..1131 17..919 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:36:28 Download gff for BO07873.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1951989..1952879 29..919 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:08:45 Download gff for BO07873.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1951989..1952879 29..919 99 <- Minus

BO07873.complete Sequence

1867 bp (1867 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630974

> BO07873.complete
GAAGTTATCAGTCGACATGGTTTACTTTAGTCCGCGTGGCATGCAACCGT
GTAGTCCAGCGGGAGAAATCGCAATGATGCCGCCTTCGAAGAGCCCCGTG
ATGGAGAGCGCCGCCTCCGAACAGAATCCTGCCCAGCAGAGCCAGCAGCA
GGACGAGCAGAGCGCCAAGCGGGCGTGTCCCCTAAAGTTTTCGATAGCCA
AGATCATGGAGCCGGATCACAGGCCCAGCCAAGTGCCACCGCCGCAGCCC
GCTCCGGTTTCCTTCGCCACCAACGATGACGACGAGGATGAGGATCCGGA
GATCGATGCCGACTCGGAGCGCTCCTGCAGCCCCATCGAGGTGATCAGCC
TGGATCAGTCGCCATCCACTGTCAACTATGACTCCGCTTTCAAGAAGTAT
GTGCCGGGTCCGTGTTCGGGCGCCACTTCATCGGTGGCCTCGCCGCCGAG
CACCGCTGCTGTGCAGCAGTTTGTGAGCTCCCGCCACCAGGAGCTGCTCT
CGCAGTATCCCCTGCTGTACTATGCACCCAATCAGCTGATGTGCGCCGCT
GCTGCCGCCCAATATGCAGCCCTTACCGCCCAACAGCAATCGCTGGCCAG
CGCCGCCCACCTGAGCAGCTTCACCGCATCCCTGAATGCCAGCTTGCATC
ACTCGCAGTCGCTGAGAAGAAATCTGGGTCATCCACTGGCCGCGGCAGCT
GCCGTGGCGGCAGTGGCCCAATCCCAGGCGGTGCCCAATTTGCAACATAC
CCTGGAAAAGTCGCCAGTGGCCCAGAGAACAGCCCAGAGTTCGGGATTGC
AAGCTAACTTGAAGAGGAAACGATCGCCGCAGGATCAGGGCGAAGTGACG
CCGCCTCCAGCGTCTACTGCCACTTCCGCCACTGGAGCCAGATCCCGCTC
CCCCTCGCCGCAAGGATCCATCGAGGACAGCAGTCCCGGATCGGCCAGTG
GCGGCAAGCCCAAGACCTTCTCCTGCCTGGAATGTGGCAAGGTGTTCAAC
GCCCACTACAACCTCACCCGCCACATGCCCGTCCACACCGGAGCCAGGCC
GTTTGTTTGCAAGGTCTGCGGCAAGGGATTCCGCCAGGCTTCGACTCTCT
GCCGGCACAAGATCATCCACACGTCGGAAAAGCCGCACAAGTGCCAGACC
TGCGGCAAGGCCTTCAATCGCTCCTCCACCCTCAACACCCACTCGCGCAT
CCACGCCGGCTACAAGCCCTTCGTGTGCGAGTACTGCGGCAAGGGGTTCC
ACCAGAAGGGCAACTACAAGAACCACAAGCTGACCCACAGCGGCGAAAAG
GCCTACAAGTGCAACATCTGCAACAAGGCCTTCCACCAGGTCTACAACCT
CACCTTCCACATGCACACGCACAACGACAAGAAGCCCTACACCTGCCGCG
TCTGCGCCAAGGGATTCTGCCGGAACTTCGATCTGAAGAAGCACATGCGG
AAGCTGCACGAGATCGGCGGCGATCTGGATGACCTGGACATGCCACCCAC
CTACGACAGGCGGCGCGAGTACACGCGCAGGGAGCCACTTGCCTCCGGTT
ACGGCCAGGCATCGGGTCAACTCACGCCGGACTCCAGTTCCGGCAGCATG
TCGCCGCCCATCAATGTCACCACACCGCCACTTTCCAGCGGCGAGACGAG
TAATCCCGCCTGGCCCAGGTCCGCCGTTTCGCAGTATCCGCCCGGTGGCT
TCCATCACCAGCTCGGAGTGGCTCCACCTCACGATTATCCCAGTGGCTCC
GCCTTCTTGCAACTCCAGCCGCAGCAGCCACATCCGCAAAGCCAGCAACA
CCATCAGCAGCAGCAAAGACTCTCGGAGACCTTCATAGCCAAGGTGTTTG
CAAGCTTTCTAGACCAT

BO07873.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
erm-RD 2097 CG31670-PD 1..1833 17..1849 9165 100 Plus
erm-RC 1965 CG31670-PC 1..1833 17..1849 9165 100 Plus
erm-RA 1836 CG31670-PA 1..1833 17..1849 9165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:14:32
Subject Length Description Subject Range Query Range Score Percent Strand
erm-RD 2881 CG31670-RD 229..2061 17..1849 9165 100 Plus
erm-RC 2881 CG31670-RC 229..2061 17..1849 9165 100 Plus
erm-RA 2881 CG31670-RA 229..2061 17..1849 9165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:14:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1951059..1952879 1849..29 9105 100 Minus
Blast to na_te.dros performed 2014-11-26 22:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2454..2515 1760..1821 157 72.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..6820 1759..1816 155 74.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6799..6859 1759..1816 153 77 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6787 1760..1816 150 73.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6752..6808 1760..1816 150 73.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2363..2424 1759..1820 148 71 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2356 1766..1815 142 76 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2368 1759..1815 141 71.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2402..2464 1759..1815 139 74.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1513..1572 1761..1820 138 70 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6784..6845 1759..1820 130 67.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2798..2855 1759..1816 128 69 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6821..6876 1760..1815 127 69.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6766 1772..1816 126 75.6 Plus
roo 9092 roo DM_ROO 9092bp 1100..1151 1766..1820 124 72.7 Plus

BO07873.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:02:00 Download gff for BO07873.complete
Subject Subject Range Query Range Percent Splice Strand
CG31670-RA 1..1836 17..1852 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:41 Download gff for BO07873.complete
Subject Subject Range Query Range Percent Splice Strand
CG31670-RA 195..2034 17..1855 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:51:35 Download gff for BO07873.complete
Subject Subject Range Query Range Percent Splice Strand
erm-RA 229..2061 17..1851 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:02:00 Download gff for BO07873.complete
Subject Subject Range Query Range Percent Splice Strand
CG31670-RA 195..2034 17..1855 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:55:16 Download gff for BO07873.complete
Subject Subject Range Query Range Percent Splice Strand
erm-RA 229..2061 17..1851 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:55:16 Download gff for BO07873.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1951055..1952879 29..1851 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:51:35 Download gff for BO07873.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1951055..1952879 29..1851 99 <- Minus

BO07873.pep Sequence

Translation from 16 to 1867

> BO07873.pep
MVYFSPRGMQPCSPAGEIAMMPPSKSPVMESAASEQNPAQQSQQQDEQSA
KRACPLKFSIAKIMEPDHRPSQVPPPQPAPVSFATNDDDEDEDPEIDADS
ERSCSPIEVISLDQSPSTVNYDSAFKKYVPGPCSGATSSVASPPSTAAVQ
QFVSSRHQELLSQYPLLYYAPNQLMCAAAAAQYAALTAQQQSLASAAHLS
SFTASLNASLHHSQSLRRNLGHPLAAAAAVAAVAQSQAVPNLQHTLEKSP
VAQRTAQSSGLQANLKRKRSPQDQGEVTPPPASTATSATGARSRSPSPQG
SIEDSSPGSASGGKPKTFSCLECGKVFNAHYNLTRHMPVHTGARPFVCKV
CGKGFRQASTLCRHKIIHTSEKPHKCQTCGKAFNRSSTLNTHSRIHAGYK
PFVCEYCGKGFHQKGNYKNHKLTHSGEKAYKCNICNKAFHQVYNLTFHMH
THNDKKPYTCRVCAKGFCRNFDLKKHMRKLHEIGGDLDDLDMPPTYDRRR
EYTRREPLASGYGQASGQLTPDSSSGSMSPPINVTTPPLSSGETSNPAWP
RSAVSQYPPGGFHHQLGVAPPHDYPSGSAFLQLQPQQPHPQSQQHHQQQQ
RLSETFIAKVFASFLDH

BO07873.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
erm-PD 698 CG31670-PD 1..611 1..611 3269 100 Plus
erm-PC 654 CG31670-PC 1..611 1..611 3269 100 Plus
erm-PA 611 CG31670-PA 1..611 1..611 3269 100 Plus
erm-PB 603 CG31670-PB 1..603 9..611 3225 100 Plus
Clamp-PA 561 CG1832-PA 205..523 158..482 424 30.5 Plus